beers2

Simulate sequencing reads using BEERS2 (Illumina paired-end reads)

usage

nexus run --nf-workflow sequencing_simulation_beers2.nf \
    -c nextflow.config \
    -w work/ \
    --samples_tsv_file samples.tsv \
    --output_dir results/

Note

Nextflow config files are available here. Use the config file that matches your installed Nexus version (e.g. nexus_v0.2.0_nextflow_slurm.config).

parameters

parameter	description
--samples_tsv_file	TSV file with the following columns: ‘sample_id’, ‘config_file’.
--output_dir	Directory to which output files will be copied.