Getting Started

ACE Configurator for ELISpot

Source code: link

License: Apache 2.0 License

Latest Stable Version: 0.1.1.0

Updated date: December 7, 2023

ACE is a python library and command-line software for:

1. Generation of ELISpot assignments.
2. Deconvolution of hit peptides from ELISpot results.

01. Installation

Please first download the latest stable release of ACE from here

pip install ace-<version>.tar.gz

02. Dependencies

• pandas (>=1.5.2)
• numpy (>=1.23.1)
• golfy>=2.5.0
• ortools>= 9.3.10497
• torch
• transformers (==4.30.2)
• scikit-learn
• openpyxl
• levenshtein

Command Line Interface

usage: ace [-h] [--version] {generate,deconvolve,verify} ...

ACE Configurator for ELISpot.

positional arguments:
  {generate,deconvolve,verify}
                        ACE sub-commands.
    generate            Generates an ELISpot experiment configuration.
    deconvolve          Deconvolve hit peptide IDs given read-outs from an ELISpot experiment.
    verify              Verifies whether an ELISpot assignment satisfies all ACE constraints.

options:
  -h, --help            show this help message and exit
  -v, --version         show program version number and exit

ACE includes the following commands:

• generate (generate an ELISpot configuration)
• deconvolve (deconvolve hit peptides from ELISpot results)
• verify (verify if an ELISpot configuration is optimal)

Citation

If you use ACE in a publication, please cite our preprint describing ACE.