nexus_create_beers2_input_data
Usage
nexus_create_beers2_input_data \
--sample-id "" \
--tsv-file /path/to/file \
--config-yaml-file /path/to/file.yaml \
--output-dir /path/to/dir/ \
[--polya-length 150]Parameters
| Parameter | Type | Default | Description |
|---|---|---|---|
--sample-id |
str |
required | Sample ID. |
--tsv-file |
str |
required | Input TSV file with the following headers: ‘transcript_id’, ‘num_molecules’, ‘sequence’. |
--config-yaml-file |
str |
required | BEERS2 config yaml file. |
--output-dir |
str |
required | Output directory. |
--polya-length |
int |
150 |
PolyA tail length to append (0 to disable). BEERS2’s default PolyAStep filters out untailed molecules (default: 150). |