{ "source": { "repository": "https://github.com/iskandr/osteosarc", "input_id": "af299e74992360e7892c7effbe163bcec7d61d044981807b2dc100bca55d845d", "snapshot": { "id": "efb65d4b683bda162879c86c0ea889afcc64704b5228224c061109f306503b91", "name": "2026-09-28" }, "osteosarc_version": "0.15.0", "membership_policy": "union of index vaccine_count, source_variants flags, and vaccine-overlap membership", "provenance": { "aliases": { "tumor_scrnaseq_T1.bam": "kamil/tumor/output/T1/outs/per_sample_outs/T1/sample_alignments.bam", "tumor_scrnaseq_T2.bam": "kamil/tumor/output/T2/outs/per_sample_outs/T2/sample_alignments.bam", "tumor_scrnaseq_T3.bam": "kamil/tumor/output/T3/outs/per_sample_outs/T3/sample_alignments.bam", "tumor_scrnaseq_T3_CD45neg.bam": "kamil/tumor/output/T3_CD45neg/outs/per_sample_outs/T3_CD45neg/sample_alignments.bam" }, "aliases_basis": "Explicit T1/T2/T3/CD45neg CellRanger sample paths in bams.json", "allele_resolutions_sha256": "ade4b130e4031fa853c961798418df5c5ae0208e2ea4f2d2f981276a2fc4c18d", "corrections": "osteosarc curated snapshot; corrections retained per row/variant", "curation_sha256": "6eb51bb504bd5dfae0090bdbdddfa70346ab7cf27b637eae8a98c6a9044f373c", "sources": { "bam_metadata": { "retrieved_at": "2026-09-28T03:09:30.841374+00:00", "sha256": "1a1fd0d84a2027988aba0f996a5908329bbc33bc3671c96c4323f3e3c78c9c6a", "size": 23005, "url": "https://gitlab.com/slowkow/osteosarc.com/-/raw/main/scripts/data/bam-metadata-consolidated.tsv" }, "bams": { "retrieved_at": "2026-09-28T03:09:24.588217+00:00", "sha256": "7d90c733a3cb157ff70e9302a7f7ea302cc5cac0cfd244b6d65a24d7b245e2e7", "size": 45478, "url": "https://osteosarc.com/bams/bams.json" }, "source_variants": { "retrieved_at": "2026-09-28T03:09:30.195437+00:00", "sha256": "f90e2d8c896cb45a002610f233212ed1b28d0e56891365590947d31485947e16", "size": 6411344, "url": "https://gitlab.com/slowkow/osteosarc.com/-/raw/main/src/data/variants.json" }, "specimens": { "retrieved_at": "2026-09-28T03:09:33.919413+00:00", "sha256": "c42c48b41e4b29a7c7feaa60d9401e8ccfb1faf30ac24ec5011945b32016ff56", "size": 6990, "url": "https://gitlab.com/slowkow/osteosarc.com/-/raw/main/scripts/data/samples-consolidated.tsv" }, "vaccine_overlap": { "retrieved_at": "2026-09-28T03:09:29.118440+00:00", "sha256": "3572f7ded10bc10e4dae92805210e858a024449e037e7f47320a05c93991053f", "size": 33292, "url": "https://osteosarc.com/data/vaccine_overlap.json" }, "vaf_columns": { "retrieved_at": "2026-09-28T03:09:28.375868+00:00", "sha256": "935507a2cf33688243b92285e5107c6e814aee635c5ce5f8963f2b8f3ec0535f", "size": 1482, "url": "https://osteosarc.com/variants/variant_vafs_long.columns.tsv" }, "vafs": { "retrieved_at": "2026-09-28T03:09:27.703470+00:00", "sha256": "e5627735897ba62d19c207e40d7e8516c81bd0fc793a339c8aa5138ab63f3913", "size": 1631141, "url": "https://osteosarc.com/variants/variant_vafs_long.tsv" }, "variant_index": { "retrieved_at": "2026-09-28T03:09:26.857774+00:00", "sha256": "91036401893aa14ad69091825d3636ce0990bdd47cc5e2fca297ddfd7acddb48", "size": 545438, "url": "https://osteosarc.com/variants/" } } } }, "analysis": { "run_url": "https://github.com/pirl-unc/DoesExactoWorkYet/actions/runs/37664740743", "exacto_version": "0.5.0a1", "mode": "rescore_saved_outputs", "results_sha256": "122cba9375f5dab8cf39a6c121ad2d306114c43f9e92b3e41bc384727801c3cd", "metric_label": "Vaccine sequence contained in reconstruction", "peptide_scoring_policy": "reference_supported_terminal_tags_v2", "peptide_context_sha256": "4ae72fa99211384dc5fcb081ac8e07a99a7673ea62af93cae0369900e26be957", "n_completed_methods": 29, "samples_available": [ "T1-ONT", "T1-PacBio", "T2-ILMN", "T2-ONT", "T3-ONT" ], "samples_unavailable": [], "matching_policy": "Terminal K runs of 1\u20134 are excluded only where independent same-gene GENCODE protein context supports a non-native addition. Native lysines, longer-parent-supported lysines, encoded mRNA sequences and uncertain cases remain scored. Exacto output is never used to decide exclusions. The nonempty remaining sequence must be a contiguous substring of an exported Exacto protein sequence; the reconstruction may extend on either side of the vaccine sequence. It must be linked to an RNA call with the target's exact genomic locus and allele. The matched peptide must overlap the call's translated codon/junction or frameshifted tail. Counts are any-candidate unions over the available methods and samples; all-peptides matched can combine different candidates. Predicted pVACtools epitopes are excluded. Full recorded sequences are preserved; scoring_region uses zero-based, end-exclusive recorded-peptide coordinates. amino_acid_starts locates the scored region in the protein (one-based), not any excluded N-terminal tag.", "artifacts": [ { "sample": "T1-ONT", "arm": "assembly", "reads_input_id": "3ce325392ff1cb4dda159274788a96702cbe15c8ee2c28ec08edfbe6d57ea6ef", "files": { "run.json": "9772ac7dd14c4397e46edf7614ca00488c75f3be6fd666dcc7cdab4ec1a22d8f", "rna_vars/T1-ONT_assembly_exacto_assembled_transcript_variants.tsv": "eaf2b066d567915bac2636ce3892abdcf881793b46d25b07bfc6428f812eda7f", "T1-ONT_assembly_exacto_proteoforms.fasta": "4ec441b8db9e2313cb216321a643db1eeaa004f9a07746f1ad8bf68b10d1f982" } }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reads_input_id": "3ce325392ff1cb4dda159274788a96702cbe15c8ee2c28ec08edfbe6d57ea6ef", "files": { "run.json": "8b60f2dbbe532827d1a4ef4c1d8413c6ae84b1915715d3c8dbd2ef1de0c049f8", "rna_vars/T1-ONT_assembly-ms1_exacto_assembled_transcript_variants.tsv": "da9742841e124ff80a6eba1ebd661527e277d9fd59eff1c4e303b70d0fd0d240", "T1-ONT_assembly-ms1_exacto_proteoforms.fasta": "67f10f2da4efc4f88ebe772f87a412efac1caaadd71be6a036e1b2b2a2e5303a" } }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reads_input_id": "3ce325392ff1cb4dda159274788a96702cbe15c8ee2c28ec08edfbe6d57ea6ef", "files": { "run.json": "b44e6dc1184a9ee9cef640b0bf658b866037e8791614bc857c9a208ce5388d90", "rna_vars/T1-ONT_assembly-permissive_exacto_assembled_transcript_variants.tsv": "ecff4883cab70a56213c63275e5bd8d502e15884686b2b9d18f592176ed1ff53", "T1-ONT_assembly-permissive_exacto_proteoforms.fasta": "15a4b9012dd9343e6343c4feefc466f9c7c05cfde1b4cd968852c46317610dd7" } }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "reads_input_id": "3ce325392ff1cb4dda159274788a96702cbe15c8ee2c28ec08edfbe6d57ea6ef", "files": { "run.json": "b7a00a071c933b805b260d7fa61d79ed846ee7ae0861ad3e695639e9c153715e", "rna_vars/T1-ONT_assembly-unspliced_exacto_assembled_transcript_variants.tsv": "9c9787e6f60c3bf808e73f4b8d93d5de097bdc398352c3570721d98e7a2e6282", "T1-ONT_assembly-unspliced_exacto_proteoforms.fasta": "ad1481dc866677441143b03a5f9c814c9519123102ed746308ce38d31f9ac944" } }, { "sample": "T1-ONT", "arm": "corrected", "reads_input_id": "3ce325392ff1cb4dda159274788a96702cbe15c8ee2c28ec08edfbe6d57ea6ef", "files": { "run.json": "fa6c98ff0ce566c16336dbac71c500908bc84389dd46cffe284de70c4f5c4b0c", "rna_vars/T1-ONT_corrected_exacto_assembled_transcript_variants.tsv": "5a275233ce1fb29e0b554c3740eca97ebf0ad6448957cd15e060ebea01ccc8f0", "T1-ONT_corrected_exacto_proteoforms.fasta": "0b8c16eea632d5776ce628edb57eb75c11daefb217a630030e1ce349e7ec323e" } }, { "sample": "T1-ONT", "arm": "isonform", "reads_input_id": "3ce325392ff1cb4dda159274788a96702cbe15c8ee2c28ec08edfbe6d57ea6ef", "files": { "run.json": "3aa466291d0e2b0e56a8aa9d3229661da82e8ebfe6ab163978b06dfddc5c8554", "rna_vars/T1-ONT_isonform_exacto_assembled_transcript_variants.tsv": "bfa0126e117bff5be78e3e447137e8733a8283eaccfde95ddd8862d8884a3b19", "T1-ONT_isonform_exacto_proteoforms.fasta": "2ec8c551e31e67d51934196799bb575efe8a5432acfa860aa7f9b9ef01eb19ab" } }, { "sample": "T1-ONT", "arm": "reads", "reads_input_id": "3ce325392ff1cb4dda159274788a96702cbe15c8ee2c28ec08edfbe6d57ea6ef", "files": { "run.json": "349086af08ce17ca418ef6a06dc42fd56776d8e02e4fb469cd5bd11710c6b678", "rna_vars/T1-ONT_reads_exacto_assembled_transcript_variants.tsv": "75e3d142afa9f741c389d1972f06249059e733d5ddcd3650cf1c95e0db8a6d71", "T1-ONT_reads_exacto_proteoforms.fasta": "ebedde5b9335b67589ba03c9f17b0d4c6851c7fadc6355cfcb34320e7f7981b8" } }, { "sample": "T1-PacBio", "arm": "assembly", "reads_input_id": "eb33a146035063cbfd6a1a0931dc6cd4a8ffc954b7a4a116eaa0ec891865d866", "files": { "run.json": "d1d63035086d4a0887729a2bdbe01ed59d5f75a64c61769d1923899e695fabb6", "rna_vars/T1-PacBio_assembly_exacto_assembled_transcript_variants.tsv": "31a16a2e3359fbb08d3a828305582e68c02aa53abe574dc0634ca3b6b812bc1a", "T1-PacBio_assembly_exacto_proteoforms.fasta": "07d3eb59a9a14324b55e722699096d32f5c99ff668808240caa3b508e6df51e1" } }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "reads_input_id": "eb33a146035063cbfd6a1a0931dc6cd4a8ffc954b7a4a116eaa0ec891865d866", "files": { "run.json": "389c64d03afbf6017f2e6c492813b4e9d6175a15ce98188b68732b307186939c", "rna_vars/T1-PacBio_assembly-ms1_exacto_assembled_transcript_variants.tsv": "3775bbfb3b1f2590d38df96e81722d1f63701bb79619ec672667713e761f7c0c", "T1-PacBio_assembly-ms1_exacto_proteoforms.fasta": "c8ae50fac33e161e20b48c954e268831bd8be7b04ebfe09dfeadd8e928e55131" } }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "reads_input_id": "eb33a146035063cbfd6a1a0931dc6cd4a8ffc954b7a4a116eaa0ec891865d866", "files": { "run.json": "51d44973b960dc020ec4aa5fe10d39e00a05235a44085f4ebbe1605fdcbe6d6f", "rna_vars/T1-PacBio_assembly-permissive_exacto_assembled_transcript_variants.tsv": "293a918adf3f9feff00271e69d3d4e612ae48afec68721fc2e24ba4769e2cb45", "T1-PacBio_assembly-permissive_exacto_proteoforms.fasta": "f312cc6020db2a1686a37d9beaff54ad9f9bec2a3a7437490105589b95c68426" } }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "reads_input_id": "eb33a146035063cbfd6a1a0931dc6cd4a8ffc954b7a4a116eaa0ec891865d866", "files": { "run.json": "a1b17b34a551160ab0b3e9217bab4470f6eddc072db8949e2bddbaef0a6436f9", "rna_vars/T1-PacBio_assembly-unspliced_exacto_assembled_transcript_variants.tsv": "84d7e77afeb5662185b1ef61108c19446fbc821f5e111b045864475943c4b75e", "T1-PacBio_assembly-unspliced_exacto_proteoforms.fasta": "8844fb94d4f3bb7bc624cf32d265acfdff427ae82a3451ef4f0f5040127cab17" } }, { "sample": "T1-PacBio", "arm": "corrected", "reads_input_id": "eb33a146035063cbfd6a1a0931dc6cd4a8ffc954b7a4a116eaa0ec891865d866", "files": { "run.json": "782984ccbf0e8794cdb9e8eee50068ed799eacf8c28b48f7e4b1785d1582f609", "rna_vars/T1-PacBio_corrected_exacto_assembled_transcript_variants.tsv": "4f72c05fe219a46e06a1a79854cf5496646aa5c1766e34743bee15575e5a682f", "T1-PacBio_corrected_exacto_proteoforms.fasta": "277b06cf003192d28ed8447ef009eed396ed22eabd651dabade7c782ced14994" } }, { "sample": "T1-PacBio", "arm": "isonform", "reads_input_id": "eb33a146035063cbfd6a1a0931dc6cd4a8ffc954b7a4a116eaa0ec891865d866", "files": { "run.json": "3e4bbd8db615d60473c05727a2246687dbb773180c1c46439f6fb85f34ea8aea", "rna_vars/T1-PacBio_isonform_exacto_assembled_transcript_variants.tsv": "5f6018fcdaa0fe2d1be72882d4d3b8234129e8e9d4953e466254fa425eefae16", "T1-PacBio_isonform_exacto_proteoforms.fasta": "f544be9c2a2dbc9fb1c46f5a7525fd0d556dd7594c30d5025751dc1634fb8980" } }, { "sample": "T1-PacBio", "arm": "reads", "reads_input_id": "eb33a146035063cbfd6a1a0931dc6cd4a8ffc954b7a4a116eaa0ec891865d866", "files": { "run.json": "5a148aea3ba98b8a2c59d8a49df40e6bb6c9be13d8b9ecb2118deb98d2612237", "rna_vars/T1-PacBio_reads_exacto_assembled_transcript_variants.tsv": "4c915d823fddf1bec70305861c992d6de36705323b31891b696b8ec08bd4a97d", "T1-PacBio_reads_exacto_proteoforms.fasta": "035c1675fdc5ead228a1420377c154916bc68c7183e5338e5c3bc72efd441345" } }, { "sample": "T2-ILMN", "arm": "spades", "reads_input_id": "f1932767b7c29fbeacf186d42b3d66681334790ca9995f2d2bc8e5d0a4b91b2c", "files": { "run.json": "176da9ecfadd5fa8e279335df5428178a1991dd7006e640fc31482eac679efc2", "rna_vars/T2-ILMN_spades_exacto_assembled_transcript_variants.tsv": "29de5181127a4cefb3ef8ded79224db7f6482b435e15fc4f06138c261acc6877", "T2-ILMN_spades_exacto_proteoforms.fasta": "37ab678240427397922efc655e24cd040d4c3c1e69e2d2c1afca551f0d80b217" } }, { "sample": "T2-ONT", "arm": "assembly", "reads_input_id": "7afc1a959dd3a346ecf6f50e199cebac7795ecf1a21725ddc2f6def86b70dc86", "files": { "run.json": "86073eaad6573eadc811a240ca506a25c3146b54e4783ecc0fd7c28cb49c77cb", "rna_vars/T2-ONT_assembly_exacto_assembled_transcript_variants.tsv": "374afbd4b96872a63e08dd8483ceaba02c4ba6ad2f92ba0c15d46ea85dca1639", "T2-ONT_assembly_exacto_proteoforms.fasta": "6ce58c3b6a4194a0568100c0ecf025a4824a314ca2cb04795d34d6a30a5e4839" } }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reads_input_id": "7afc1a959dd3a346ecf6f50e199cebac7795ecf1a21725ddc2f6def86b70dc86", "files": { "run.json": "f11d18e2c6be0b99a885b8bf1b198fd2e9592d6996c63720dd1d179b147903fb", "rna_vars/T2-ONT_assembly-ms1_exacto_assembled_transcript_variants.tsv": "f808e2ddc04371bae2c7b1b9a89f3f221ea393a47f94603cbfcf749e3c02365c", "T2-ONT_assembly-ms1_exacto_proteoforms.fasta": "fbe4e47f68a3527913306408e85b74f443fdc8e769e4ce3cb8dcf11d75d4e2f2" } }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reads_input_id": "7afc1a959dd3a346ecf6f50e199cebac7795ecf1a21725ddc2f6def86b70dc86", "files": { "run.json": "9e3d6ff579ee04d2d50d1ab503f610d3b36145a038e98929a0365de4c8bf6b52", "rna_vars/T2-ONT_assembly-permissive_exacto_assembled_transcript_variants.tsv": "16e2f8f87e99cd481735b5229c27a67b45219cc4720e14c44afd2accf663b203", "T2-ONT_assembly-permissive_exacto_proteoforms.fasta": "44947a3be15ac1d35d586393a4a8e8a94b098f770978f4a63e2e405f2274536c" } }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reads_input_id": "7afc1a959dd3a346ecf6f50e199cebac7795ecf1a21725ddc2f6def86b70dc86", "files": { "run.json": "928c19c5a2dc081207b5a25110ed6f3a2630a99c50ef0e530b63c00cac5a9952", "rna_vars/T2-ONT_assembly-unspliced_exacto_assembled_transcript_variants.tsv": "12392c4eeff556a403a6a45e198e054497bdd47e40fdb5850a309b39710ef595", "T2-ONT_assembly-unspliced_exacto_proteoforms.fasta": "156770765343ad2c6eba87ed481a84a3b68aae9cc32c67f80e8952622ca7ad29" } }, { "sample": "T2-ONT", "arm": "corrected", "reads_input_id": "7afc1a959dd3a346ecf6f50e199cebac7795ecf1a21725ddc2f6def86b70dc86", "files": { "run.json": "942727bbaa1e1b8839b4bca38fbee58ad236c4e933324e00322d38ceced373df", "rna_vars/T2-ONT_corrected_exacto_assembled_transcript_variants.tsv": "aba3a44e79fc92ca2191045660044ff03554baa39ba0ddf6a55bb60d562c0f59", "T2-ONT_corrected_exacto_proteoforms.fasta": "378fdb937bcc4f82f5eb497ef10175db7a7bb266ba59b1c962e3b725feae32a4" } }, { "sample": "T2-ONT", "arm": "isonform", "reads_input_id": "7afc1a959dd3a346ecf6f50e199cebac7795ecf1a21725ddc2f6def86b70dc86", "files": { "run.json": "b5b1c8f2486b63e2fceeb665a4741044342d64b47063b300ce284e4a2560e616", "rna_vars/T2-ONT_isonform_exacto_assembled_transcript_variants.tsv": "0170132e55e9b2a3cd4cd33f7a03c662df46d6ee37d154aa6b2d90f1bcda079d", "T2-ONT_isonform_exacto_proteoforms.fasta": "014ea57f11cc8f24ca3bbf95754c3315790657203f969e5a9006eb993d962734" } }, { "sample": "T2-ONT", "arm": "reads", "reads_input_id": "7afc1a959dd3a346ecf6f50e199cebac7795ecf1a21725ddc2f6def86b70dc86", "files": { "run.json": "fc6202560e518f1b8386469c7114f83c34364dbbf2e866db64170d2deeab9b36", "rna_vars/T2-ONT_reads_exacto_assembled_transcript_variants.tsv": "7723cfa27bc57276f721792b7d796094ba887e2bc5c9e632ab0559b48753cb93", "T2-ONT_reads_exacto_proteoforms.fasta": "4ab7d77ded5678080e9626fcfed4b8ff1ed0b445a79673511dcb287a7a839311" } }, { "sample": "T3-ONT", "arm": "assembly", "reads_input_id": "3b1cfcb699afaf35ee0711f6b4c1e8f71546619e37bd1d305d77c325f030798c", "files": { "run.json": "54df4d08c4a7add5cb4c175b098a4ab8d5033a040ba32f535af050ac81cd3c3f", "rna_vars/T3-ONT_assembly_exacto_assembled_transcript_variants.tsv": "b38398f2897b8f5d54734eea7a439ee3c888f84628c6e878ca82aa5f83d62a65", "T3-ONT_assembly_exacto_proteoforms.fasta": "96c14ee8a4e9e5c91833807b11568e0cb3c857e6c693dc52c9ed4a1e31d3f472" } }, { "sample": "T3-ONT", "arm": "assembly-ms1", "reads_input_id": "3b1cfcb699afaf35ee0711f6b4c1e8f71546619e37bd1d305d77c325f030798c", "files": { "run.json": "50496748432103a4f1e977ec066269f4c6ac86ea3529dce378a63a69ce90885e", "rna_vars/T3-ONT_assembly-ms1_exacto_assembled_transcript_variants.tsv": "4d11fefdda4265eeb2402337aecd5a87c2ccc05db1065673f64bfa036345b71e", "T3-ONT_assembly-ms1_exacto_proteoforms.fasta": "e75a4d4d1e11a5d8da34c8999a79b186b47db7fba5dea7a4620f5d175675282e" } }, { "sample": "T3-ONT", "arm": "assembly-permissive", "reads_input_id": "3b1cfcb699afaf35ee0711f6b4c1e8f71546619e37bd1d305d77c325f030798c", "files": { "run.json": "110773df38afec82c8cc0dde184209e3f1dfe68cc5aae53c7a1b0f03dfcf8f12", "rna_vars/T3-ONT_assembly-permissive_exacto_assembled_transcript_variants.tsv": "38d2efd10054e7e6e7f98a1d2ed5c33566476a68f42c5e17dd2150f624ddb6c7", "T3-ONT_assembly-permissive_exacto_proteoforms.fasta": "44a56285058c502b751c9224e255d23da7f8f76892030220dc4b6cac666b4898" } }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "reads_input_id": "3b1cfcb699afaf35ee0711f6b4c1e8f71546619e37bd1d305d77c325f030798c", "files": { "run.json": "7d406e28d336329f20596a21f980d56c266eac4ba2af6bcd1067e73aa8660b17", "rna_vars/T3-ONT_assembly-unspliced_exacto_assembled_transcript_variants.tsv": "e5eebf00a420120c0b000fb786751481ed7848f39d5913b703ded598ed4888c7", "T3-ONT_assembly-unspliced_exacto_proteoforms.fasta": "ff673c675acf8420c729a6fbfa0f5923d37e93f735399bf52c5d41dcc8e05a22" } }, { "sample": "T3-ONT", "arm": "corrected", "reads_input_id": "3b1cfcb699afaf35ee0711f6b4c1e8f71546619e37bd1d305d77c325f030798c", "files": { "run.json": "91efdbb4e1b5dbd47e9e8aa08cf935acd8dbb23e6f1c211386670e29e06e6049", "rna_vars/T3-ONT_corrected_exacto_assembled_transcript_variants.tsv": "c777f62e5c37bbe34daf38d0bb774badf601e0d7bb254cfbaacfa57833d41681", "T3-ONT_corrected_exacto_proteoforms.fasta": "d46ab81bb6d5d013d3c43c79d6131a595aab558103ac66046bd72c65c3491cd2" } }, { "sample": "T3-ONT", "arm": "isonform", "reads_input_id": "3b1cfcb699afaf35ee0711f6b4c1e8f71546619e37bd1d305d77c325f030798c", "files": { "run.json": "4a57b74b38fddf86cc40eb3dccfaa19bd58ccb2a57da1a909ecf335b58aff946", "rna_vars/T3-ONT_isonform_exacto_assembled_transcript_variants.tsv": "b2156c8074c9afc89d66cb0bc0184e5e2651c9def34eefdc499854cfe8fae602", "T3-ONT_isonform_exacto_proteoforms.fasta": "14d60766a053becfdce6c5164cb4d4089379cd2dd27c0256412d977f42982b9c" } }, { "sample": "T3-ONT", "arm": "reads", "reads_input_id": "3b1cfcb699afaf35ee0711f6b4c1e8f71546619e37bd1d305d77c325f030798c", "files": { "run.json": "b598378c3af0a5c900297376fda88477e26be08d9d8806e93b3faae1325442d1", "rna_vars/T3-ONT_reads_exacto_assembled_transcript_variants.tsv": "844bb4fea1fc39feccbc5796a4f665cff83b1acd7783ca0f0262b72c9979aeaa", "T3-ONT_reads_exacto_proteoforms.fasta": "6715ef53bc41e00c98cc80f43e213464ec3e5185b20a06fe43ac187ff950eb06" } } ] }, "summary": { "n_variants": 36, "n_variants_any_peptide_matched": 25, "n_variants_non_minimal_peptide_matched": 25, "n_variants_minimal_epitope_matched": 16, "n_variants_all_peptides_matched": 24, "n_peptide_entries": 78, "n_peptide_entries_matched": 57, "n_unique_sequences": 77, "n_unique_sequences_matched": 57, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 41, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 16, "candidate_outcome_counts": { "peptide": 27, "no_call": 8, "rna_only": 1 }, "n_translated_candidate_variants": 27, "n_residue_checkable": 23, "n_residue_confirmed": 21 }, "reconstructions": { "T1-ONT/assembly/510|orf_248-784": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/assembly/529|orf_236-1114": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE*", "T1-ONT/assembly-ms1/2722|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/assembly-ms1/3315|orf_16-375": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/assembly-ms1/5328|orf_10-1356": "MHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSGGELFGLLGHPPRRP*", "T1-ONT/assembly-ms1/6053|orf_142-1020": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE*", "T1-ONT/assembly-ms1/650|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/assembly-ms1/676|orf_241-564": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-ONT/assembly-ms1/6963|orf_45-1589": "MLIKENIKDIPKFEVYCKKIPSECSIHHELYHQISSYPDCKTKDLLPSLLLRVEPLDEVTTEWSDAIDINSQGTQVVFLTGFGYVYVDVVHQCGTVFITVAPEGKAGPILTNTNRAPEKIVTFKMFITQLSLAVFDDLTHHKASAELLRLTLDNIFLCVAPGAGPLPGEEPVAALFELYCVEICCGDLQLDNQLYNKSNFHFAVLVCQGEKAEPIQCSKMQSLLISNKELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVEDTFVYYIKTLFDTYLPNSRLAGHSTHLSGGKQVLPMQVTQHARALVNPVKLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLFRLGISLLGKGLRGLPPVCTPAG*", "T1-ONT/assembly-ms1/706|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/assembly-ms1/844|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/assembly-ms1/94|orf_821-1240": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR*", "T1-ONT/assembly-permissive/1794|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/assembly-permissive/3946|orf_55-681": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/assembly-permissive/3948|orf_93-788": "MRDISYMGIIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/assembly-permissive/4727|orf_121-1152": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFRNTE*", "T1-ONT/assembly-permissive/5467|orf_536-1414": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE*", "T1-ONT/assembly-permissive/6161|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/assembly-permissive/687|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/assembly-permissive/711|orf_241-564": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-ONT/assembly-permissive/7615|orf_45-1589": "MLIKENIKDIPKFEVYCKKIPSECSIHHELYHQISSYPDCKTKDLLPSLLLRVEPLDEVTTEWSDAIDINSQGTQVVFLTGFGYVYVDVVHQCGTVFITVAPEGKAGPILTNTNRAPEKIVTFKMFITQLSLAVFDDLTHHKASAELLRLTLDNIFLCVAPGAGPLPGEEPVAALFELYCVEICCGDLQLDNQLYNKSNFHFAVLVCQGEKAEPIQCSKMQSLLISNKELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVEDTFVYYIKTLFDTYLPNSRLAGHSTHLSGGKQVLPMQVTQHARALVNPVKLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLFRLGISLLGKGLRGLPPVCTPAG*", "T1-ONT/assembly-permissive/84|orf_824-1243": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR*", "T1-ONT/assembly-unspliced/5172|orf_179-712": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/assembly-unspliced/550|orf_236-1114": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE*", "T1-ONT/assembly-unspliced/703|orf_241-564": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-ONT/corrected/00241404-313d-49df-b5c1-01d6d87e229a_0|orf_47-1147": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVNPECKTSVALALLLGS*", "T1-ONT/corrected/01332cce-c721-44a1-8a88-67e0b193568c_0|orf_235-1170": "MPNSVLWAVDLFGRVYTLSTAGQYWEMCKDSQLEFKRVSATTQCCWGIACDNQVYVYVCASDVPIRRREEAYENQRWNPMGGFCEKLLLSDRWGWSDVSGLQHRPLDRVALPSPHWEWESDWYVDENFGGEPTEKGGWTYAIDFPATYTKDKKWNSCVRRRKWIRYRRYKSRDIWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGR*", "T1-ONT/corrected/01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-547": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/03343e0b-44e9-479d-8b9e-077b1ff4bce6_0|orf_890-2329": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/03782511-7341-4f45-8e0c-b988e1fbc6b2_0|orf_139-1578": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/050f0f95-9578-44f7-a831-1edb1fbbc2df_0|orf_179-2581": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T1-ONT/corrected/0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_780-1187": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIFKYKSLQTPESLFLFVVK*", "T1-ONT/corrected/070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-908": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKIRLKRLFAISVLWQCRIGRNIFCFPECCCNLFYFSFNGLSLKLEDGFIIANTPCSERLTFEVCSFIHSTFIMVLFCKDI*", "T1-ONT/corrected/07221c19-a06c-4c60-926c-1c99f30decba_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_36-2546": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSGGLNGDQQPLAQPLSADPPGPGDLPFFVNHSALHPGKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T1-ONT/corrected/08305c0d-a7f3-4e27-a6a4-baa7fd989f5e_0|orf_112-2298": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSNEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2235": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/087b22fd-a293-4c2b-9715-31a029618a13_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/0902d3e1-f88a-42e8-b12a-0d7411cef3c2_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_311-433": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T1-ONT/corrected/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_174-1376": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGPNTGQG*", "T1-ONT/corrected/0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGR*", "T1-ONT/corrected/0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/0d244a77-419b-4138-8c89-076c0942ae84_0|orf_296-1207": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISLQYIQRMQKLYGTVSTKHLGRLPRKKLTYSWIAFIHISIDISKFIYQPQD*", "T1-ONT/corrected/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2235": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/0e5b2ee2-7047-47fb-9b21-26672a685d22_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-ONT/corrected/0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-1077": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T1-ONT/corrected/0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/12cf7430-2a65-4c0b-94fe-fd17a809eb2e_0|orf_29-1453": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/corrected/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1132": "MYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/16daa179-609c-4632-8fee-8ec022a167d7_0|orf_207-1646": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDT*", "T1-ONT/corrected/17fde470-2d2f-44b8-81d3-7446ae3f8c5f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_844-2442": "MHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCRFATSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T1-ONT/corrected/1946aa41-dae1-4d85-b155-f8e82b685bd9_0|orf_156-1106": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEIKLLAKLGTCVIPHPGETGEPGSSPDSGYLETWQALPCHHQF*", "T1-ONT/corrected/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_11-2203": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLRNLSLLVLLWFSQRQQWQPLSDETTVECGKMAP*", "T1-ONT/corrected/1eea4094-d908-4653-96a0-4f5b0e5dda35_0|orf_154-546": "MSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVI*", "T1-ONT/corrected/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_317-1888": "MSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/221525a9-fbf5-4fa9-80da-2585ad81f5ef_0|orf_16-1614": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLRFIQEIEHALGLGPAKQCPLREFLTVYIKNIFLNQVLAEINKEIEGVTKTSDPLKILANADTMKVLGVQRPLLQVIIHFELTIFISNFH*", "T1-ONT/corrected/260bc0d5-74b8-458d-8a89-23be5d847b3c_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/293bf4c4-e7c0-4136-bff3-a82ab6b4b1ea_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/2a0d9567-0e7c-4ad8-b739-87fbfac10422_0|orf_31-1455": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/corrected/2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_15-2975": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLRFYSDNSVQRKGFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGYGVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHSDDTITKKGFHLRYTSTKFQDTLHSRK*", "T1-ONT/corrected/2d039f4a-6c2c-4b03-b6c1-125a33099818_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/301deb91-0736-4cc9-a086-e889a64c133e_0|orf_233-2425": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGEDCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/3101801f-1f95-40e9-b6c6-2af1a3924314_0|orf_32-1456": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/corrected/316dced8-9650-438f-bc92-2b6bc520d3ae_0|orf_255-749": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGQSCSGRPTLQTPSLGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNW*", "T1-ONT/corrected/318ba90e-fe0a-4c77-b9ea-266fa7cfe825_0|orf_820-1284": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDMGVFSAYKLAGEILVFFPFSKI*", "T1-ONT/corrected/33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/354ecfdd-4b90-40e4-a787-fbae766ae267_0|orf_20-1558": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRERQQPEQHPHRALLWL*", "T1-ONT/corrected/357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-1112": "MYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/365e0297-f4c3-4cff-b82d-2e74ffb50d67_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2225": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-ONT/corrected/3961dbeb-b7fd-4458-ad3c-d798766f9a19_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_31-588": "MSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/39b9cf3d-1796-457c-975d-acde6b6222c1_0|orf_19-1800": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLRFIQEIEHALGLGPAKQCPLREFLTVYIKNIFLNQVLAEINKEIEGVTKTSDPLKILANADTMKVLGVQRPLLQVIIHFELTIFISNFH*", "T1-ONT/corrected/39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_120-2312": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKTEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/3a866e7c-58ab-4532-b05f-6e26caf052f1_0|orf_10-1818": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLRFYSDNSVQRKGFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGYGVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHSDDTITKKGFHLRYTSTKFQDTLHSRK*", "T1-ONT/corrected/3a8a5143-37d2-408c-a67e-56478c9ff4ae_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/3aac9586-2900-44b5-9f3b-b71291001b87_0|orf_21-1244": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQVRAFYKGCHLDSE*", "T1-ONT/corrected/3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-ONT/corrected/3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_820-1239": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR*", "T1-ONT/corrected/3b427a12-e877-4e70-8ab2-614b85d656b3_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDARTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/3b62d6cd-157e-45e9-be59-319f24a539d8_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/3c4bce1d-858d-461f-93aa-7786d4657380_0|orf_823-2262": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/3d811ec8-6f16-46a1-810d-89b8c12b1d85_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/3f6478a4-00fb-495b-964e-ad861f3385c1_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/40396650-9d04-47f6-9c35-85344bc77ef6_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/4357959e-9607-4ce6-b605-b99dabd038ec_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/441c6ff8-f0eb-4237-bd05-f70343c6b173_0|orf_20-910": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKIELKRLFAISVLWQCRIGRNIFCFPECCCNLFYFSFNGLSLKLEDGFIIANTPCSERLTFEVCSFIHSTFIMVLFCKDI*", "T1-ONT/corrected/44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_63-1046": "MYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNRKKYSALIPLSAISAPTESNTKTEPRQDTTRIATCLSLYLPTRRSSDLSRESGQYRFLIWAMLLAECPAGPERLL*", "T1-ONT/corrected/46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-1244": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQVRAFYKGCHLDSE*", "T1-ONT/corrected/4825f9b4-eab1-4402-a0cd-500f181c6fe3_0|orf_43-651": "MSETAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/4a924a47-aa14-43cf-80a8-9e05c1b973d1_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/4b31b2a5-29a5-4311-b845-833cf9294358_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/4d888581-850f-4cce-8485-0977db44ca29_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/51632d48-b427-4a80-abe3-e02916ccbc69_0|orf_73-699": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/52c61f84-0a35-43a5-84d9-4d2ecb8f7d4e_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/52fd0854-e183-4e8e-b64f-c15523d8c37f_0|orf_82-1980": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWLKFVSDGSIPSTFSKRWTSALGPTAGAVSSGASTPWAATSAAVTPGTSWPQTSAAVRLLVADSSPSSTAPSPARAGPRSTPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQTRTSAPRITAAASRTASTRSAVMSANAAVASSSMTTSTTAKKPAVTTR*", "T1-ONT/corrected/5347aac4-7a9f-42d3-93ba-7fc0db002953_0|orf_26-1525": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVI*", "T1-ONT/corrected/53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPLPWSGRG*", "T1-ONT/corrected/5418683c-affa-4273-bf81-cf027643e81f_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYRNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-ONT/corrected/550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-691": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWGGAECGEDGPSHARGDQPCRLQAWDHPWRLLHTSWQEHYTWQ*", "T1-ONT/corrected/55d792c5-874e-4692-9a6d-56f76edd5467_0|orf_21-1445": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/corrected/56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_252-785": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/56780a19-5a31-43c8-b9be-6ebc896c3012_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1737": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/5767b812-a13f-4363-aafe-c5f5c13b1544_0|orf_171-704": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERSFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/578fad5e-8d0c-43c5-8bc7-0fdfaec3696a_0|orf_1400-1690": "MQVLCPCLASQVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWAHSGRDRPWSGEGINRSNPKGGQPGSPTHIPCTGEKGEGHSLPSCPG*", "T1-ONT/corrected/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463": "MLFKIFRDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/580565cf-f3bb-4e9b-93e1-e81a688e523a_0|orf_33-2225": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/58ab7220-8084-4324-910f-e1ee96e1899d_0|orf_261-794": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/58ce1a8a-e9ec-411a-97c6-207011494a1d_0|orf_256-696": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLREGPSILCRPGEIHALRAGSCHGLGGAECGEDGPSHARGDQPCRLQAWDHPWRLLHTSWQEHYTWQ*", "T1-ONT/corrected/59406cd0-1f81-4df2-bb71-2dc45b30e394_0|orf_30-656": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/5cb71db8-55e7-4dd1-a528-42af3ad19de7_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/5d84450e-5103-4c7e-81a3-1d859bc3a687_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_205-735": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTELCSELDL*", "T1-ONT/corrected/60855f85-bb13-41df-99b1-85a054a7014a_0|orf_11-421": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T1-ONT/corrected/60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_107-1738": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDVQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/6135d740-094c-4a32-ba29-810ce10c83a5_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/61ca82b1-36f0-4770-bfa1-16339dfb782f_0|orf_105-1736": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_103-1833": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/62ff7def-32d2-4f70-bc1b-d26fa353a835_0|orf_43-2235": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/630bedda-bee2-4954-81e3-547a7a4542a4_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/639c0f9a-2e7d-429e-9d72-5d52f24d7ac7_0|orf_31-2223": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_174-707": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2278": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_112-2304": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/670ea9cd-c869-4473-8eb4-505573f2d773_0|orf_91-450": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/684bbc1d-fe7b-4673-a0a9-fab6b297f7bf_0|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/68975354-e52a-42cf-80bc-46588e084cf1_0|orf_448-1140": "MGIYFLYGIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-2234": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/6a268bf2-2a3e-482f-9616-5956e8a2250f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/6b60b7af-50a2-4f8f-958d-217179e2b71c_0|orf_26-1543": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKVQYVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLR*", "T1-ONT/corrected/6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/6bde40f5-dfc6-4fc5-b6d9-a6e9440a0b31_0|orf_103-1440": "MATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQSSGPFVEGSIVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMVEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLREGEKECGRSYCTF*", "T1-ONT/corrected/6c525d52-ed36-4c53-b385-7226f38f64f8_0|orf_19-909": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKIRLKRLFAISVLWQCRIGRNIFCFPECCCNLFYFSFNGLSLKLEDGFIIANTPCSERLTFEVCSFIHSTFIMVLFCKDI*", "T1-ONT/corrected/6d505164-2b32-4413-8422-ed774dadd644_0|orf_121-2313": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_255-671": "MMWRKTTAVSNLVSKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766": "MISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-ONT/corrected/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1738": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_262-795": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_745-2184": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/7369afa2-9471-4079-93f5-2ba142dd8f7f_0|orf_361-1533": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T1-ONT/corrected/73f6044f-38ee-47d0-aa41-daeb02d25632_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/75bae4d7-f6a7-4a59-b0e7-c5bb8343831f_0|orf_132-1340": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAPHALRVAHLCHTRGEDHPELHDPGPVPQPPVLVRLCGGPRWLLEEGAPPRPLLRVQTP*", "T1-ONT/corrected/77602395-6c56-45cb-9756-0a2616eee214_0|orf_43-2235": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQLPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-1536": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLR*", "T1-ONT/corrected/7a5a5289-1b09-4910-87ec-ab94b0f281d6_0|orf_144-2336": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/7b5be8bd-8ffc-48a1-9781-bfec86a48888_0|orf_20-1444": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/corrected/7bfa1f87-74af-4d14-a973-dc2d0f2e33e4_0|orf_229-2373": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQQHTSVLLPTVPVRGPGTLPRALPPPILMVSVTFPVVK*", "T1-ONT/corrected/7d8a0ab0-be18-4fd7-b74c-f20495faadfe_0|orf_253-786": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-2210": "MPGVARLPLLLGLLLLPRPGRPLDLAQGTYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/7f89fc15-b8cc-4c5d-b5d8-7b4a975007ac_0|orf_42-2234": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/80bdc6a2-5ddf-453b-bd2f-cbfe3a7af699_0|orf_33-2225": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/822851eb-b678-496f-bffc-ca374428a9e1_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/828547de-dda4-4188-b1ff-f67e1cb93f62_0|orf_1541-1864": "MLLFPQVPSHPSPTSPQAWPGTWTGSHWMRSTTTGRRSGGGSSPRAWARGFDRACSGWASACLVRGCGASHLSVLQQAEMQGLPGLGNFAFCLGMTRKCSEKVRHLL*", "T1-ONT/corrected/83dff833-2718-4993-afce-b63764344099_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/84d6d4a1-af1d-4e5d-9b48-eb6c143afaff_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-738": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/8655a9b1-148b-41f2-a759-f3a8f1cf0166_0|orf_2034-3146": "MDDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLEAYPVPHLPAV*", "T1-ONT/corrected/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1428": "MHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-379": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/89769e07-e24c-42c0-a13b-84b9c6d7ca7d_0|orf_94-240": "MGYPCGFQVHSRTQYALNACSDFVSKWKIASMPINGQPNLNFWSTEQI*", "T1-ONT/corrected/89c3cfdc-9577-425b-9635-0aadfd160dd9_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/89f2e4b1-73e0-4766-8ebe-25b613377c13_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-ONT/corrected/8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/8bf6cc3a-5c83-458e-86b9-5fc5fbc90106_0|orf_172-1206": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T1-ONT/corrected/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-711": "MSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417": "MPSPQSLRAPSLVFQGWTYAIDFPATYTKDKKWNSCVRRRKWIRYRRYKSRDIWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGRCGSEEASTLTIPAAPVGLRWLVR*", "T1-ONT/corrected/8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFITIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_212-2404": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPRKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/90dfb37b-dd9c-4782-8161-62f94cdf33e7_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_200-733": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-744": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPHLKPGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNW*", "T1-ONT/corrected/93ab3460-f131-471c-9c04-e201badab597_0|orf_27-1970": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPLLLRNLTLDGMGWGLRCPPTPHLHSAIPAHLPLAGQNWCSLLPTVPVRGPGTLPRALPPPILMVSVTFPVVK*", "T1-ONT/corrected/93ae6744-c2a2-4b64-805a-f00d84b97ba1_0|orf_802-1617": "MNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/953ad68e-6f5a-432f-a101-d8b55521c923_0|orf_36-662": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/95508ff9-b9a0-4078-8c23-c061ab4a77b6_0|orf_20-697": "MGIIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/95c406c1-5b10-4790-8088-4e5180dccdcb_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/996b7767-bcba-4be7-9ee1-b99a8abf9719_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439": "MELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-ONT/corrected/99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/9a4ed9da-771a-4a70-a5cb-a9c267a9264f_0|orf_26-1624": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_121-2541": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEGCYDLQLLVADSSPSSTAPSPARAGPRSTPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T1-ONT/corrected/9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/9ecf34d8-c6e5-4322-ad0e-e113fdf29b3f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_790-1962": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T1-ONT/corrected/a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-695": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGEENQPCRLQAWDHPWRLLHTSWQEHYTWQ*", "T1-ONT/corrected/a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_253-786": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_33-2225": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/a6de019a-9d88-4bec-837d-4fee7007615b_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/a7182491-a967-4009-9b73-d535edfd9a19_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_104-2116": "MGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVALAHSSPLRLSATTAVPTTIWRCATGTVRAAPSSGATVAMRSLMTSRARPAASGSSSSLTGPLTKRALPSTFSKRWTSALGPTAGAVSSGASTPWAATSAAVTPGTSWPQTSAAVRLLVADSSPSSTAPSPARAGPRSTPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T1-ONT/corrected/a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRNRLRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQVRAFYKGCHLDSE*", "T1-ONT/corrected/a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-920": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKIRLKRLFAISVLWQCRIGRNIFCFPECCCNLFYFSFNGLSLKLEDGFIIANTPCSERLTFEVCSFIHSTFIMVLFCKDI*", "T1-ONT/corrected/a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/a783655f-207e-48b4-849e-e4bb57720778_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/a7b32005-eda0-4342-88a8-3cdc1e515c7d_0|orf_17-1615": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/a95e9948-a37b-478a-a432-b49d9ff178e7_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_22-732": "MTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVERGSSGSHSVMRQLLSVAKWRLEERGLGEQPCNVSSQLHGTD*", "T1-ONT/corrected/acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/ae536cc9-de46-4177-9de6-38040ef30174_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_375-1217": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWGQCPQNTWGGYPGRS*", "T1-ONT/corrected/aee1d64e-0663-4d0b-b21a-ded58f3d1f29_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/af46850a-2e2f-471b-adc9-a40cd8777f1c_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_92-2284": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_36-2228": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_28-2220": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/b461cead-1b21-45f0-9ae5-4a83da8ca9e8_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/b47ba852-1539-4eba-b9ef-fd758dc23783_0|orf_175-708": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-2979": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICDVKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLRFYSDNSVQRKGFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGYGVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHSDDTITKKGFHLRYTSTKFQDTLHSRK*", "T1-ONT/corrected/b6836833-252e-45cf-90be-b7f220ed8d50_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAVGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVACPWSGRG*", "T1-ONT/corrected/b876b8a7-5fc0-4a14-8c45-e91de2d213fb_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALGN*", "T1-ONT/corrected/b90bed2e-3bcc-491d-a749-ab5b736e522d_0|orf_53-2245": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/b93b3cfb-9c03-4af3-90bd-5c43faafb586_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_87-2279": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/bdc82e04-85c8-4f6a-bee5-3670460200a7_0|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1614": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-2278": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1135-2292": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/c136f77c-47de-463a-a426-5f3f6cc0770f_0|orf_670-1758": "MKSQQRGRKKENRKKRNLGRRRQSYMLKKCMTIKAGPIFTYLRMLVLIYGQLCHLRSVIFPKNKFMCGLDTQRASVQSDCFLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/c264799c-cddf-49ee-b108-cda27354123e_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_259-792": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/c3babc12-4893-470e-a215-b2132f0ce159_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_50-676": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/c636d334-25cd-4399-92be-908849313083_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-790": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/corrected/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2236": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1474": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/corrected/cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/cbafe623-503b-46ec-a57e-79df5e4297bb_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/cc9eb3ce-d494-4233-9708-7112dde283e9_0|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1513": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_254-547": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYITAGR*", "T1-ONT/corrected/d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_19-2211": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVGDCVPLGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/d72ed346-e148-4306-b9df-06ced2371069_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/d7b09f07-90a0-4c7f-b83c-5990feee6ac7_1|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_149-1879": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/d918dbd9-09c3-4652-aeb8-6985e0b1c25e_0|orf_15-1481": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPSGEREAISTSVPMASAVIYFTRGPPYPKSCMPWGSLMGFTQYMALTTSKCVPWSGVGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T1-ONT/corrected/d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/da578df2-44a8-40c9-aedc-25a3eb7fefb3_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/db018663-ed5f-4abb-81ac-4c9c5192228f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/db43d41f-c259-4c20-bb37-440614e193cb_0|orf_83-2275": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/dbabc853-5a86-423c-9f50-30b1cd95b7ee_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_44-1783": "MSAAIAALAASYGSGSGSESDSDSESSRCPLPAADSLMHLTKSPSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-1453": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/corrected/dddde5a2-b89a-4f82-82e0-26538a49d5bc_0|orf_83-2485": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T1-ONT/corrected/ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739": "MISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-ONT/corrected/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_105-2297": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-ONT/corrected/e0fc0075-f849-4ff3-9e61-97fbf7390aeb_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/e206a252-3024-46c7-8156-de253524f53a_0|orf_205-738": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/e2df4913-0153-46e6-b242-c72993b0be94_0|orf_32-2224": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_194-1351": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-1248": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQVRAFYKGCHLDSE*", "T1-ONT/corrected/e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_250-1065": "MNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/e9281592-9005-4993-955b-3ce53224ec5a_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/e9e00242-3724-4495-8ed1-b14d41779c87_0|orf_224-1258": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T1-ONT/corrected/ecb4f698-0298-4069-8813-2f64c22ceecd_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/ed635da6-6802-4838-866e-3a1594427455_0|orf_530-1363": "MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKQEISEDVQFGTTSERPAENAEENPESEEGFESGDRSERQWGDLTAEEWVSYPLQPVTDLLVHKEVHTGIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSCHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKP*", "T1-ONT/corrected/edcdd4f5-54f3-4629-861b-86c4e0b1ab33_0|orf_36-2228": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_214-2403": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSKNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/corrected/f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSWCSELDL*", "T1-ONT/corrected/f21da920-255e-4911-bbc2-79980989d93c_0|orf_16-831": "MNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/corrected/f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-1542": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADNGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLR*", "T1-ONT/corrected/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_133-2325": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/f40b9f75-c699-4785-a396-a2c7e1faa904_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/f5f3c0ef-47a7-4d88-8a34-1cbed051e08f_0|orf_36-2228": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/corrected/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-2213": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/corrected/f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/fa660ceb-1d1b-407b-91d5-dfae44515c0d_0|orf_25-651": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_46-1785": "MSAAIAALAASYGSGSGSESDSDSESSRCPLPAADSLMHLTKSPSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/fbb9b78b-80ce-4e93-b6c4-d5f617e28ab4_0|orf_255-665": "MMWRKTTAVSNLVSRAWWRTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/fc8654b9-cb4d-4ab2-8d0d-539e02c0dea2_0|orf_231-1265": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T1-ONT/corrected/fdb4c4d3-0978-4aba-b315-4cf6e0d555fc_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217": "MYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/corrected/feaae8c4-4b43-4fd6-8693-00fd7e5577d0_0|orf_541-1419": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE*", "T1-ONT/corrected/ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/corrected/ff2fc7a1-7c7e-427d-b34d-127d90001bc0_0|orf_213-2114": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPHPVPHLPAV*", "T1-ONT/isonform/3_0_19|orf_15-695": "MPMGIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/isonform/4_0_6|orf_257-790": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKELPSE*", "T1-ONT/reads/01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-499": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHSTKL*", "T1-ONT/reads/0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_777-1184": "MDSYSAPESAPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIFKYKSLQTPESLFLFVVK*", "T1-ONT/reads/070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-836": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKREARKLWIEGIEHKHVLNLLRNKDENIKQVPQKLEQCMASKHYLSATDMLSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKIRLKRLFAISVLWQCRIGRNIFCFPECCCNLFYFSFNGLSLKLEDGFIIANTTCRG*", "T1-ONT/reads/07ae1611-3e4e-4218-888f-57f2f7c507c0_0|orf_6-527": "MRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISIKQDR*", "T1-ONT/reads/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_789-2189": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDGRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSPSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSGGLNGDQQPLAQPP*", "T1-ONT/reads/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2472": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSEMLQGPLLLRKEASSAAPSGTPPPAQIPSAEKKPDPPVRPARPPGPLVTQEPHLGRNGTGLRCPPTPHLHSAIPAHLPLAGQNWCSLLPTVPVRGPGTLPRALPPPILMVSVTFPVVK*", "T1-ONT/reads/09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAI*", "T1-ONT/reads/0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_73-810": "MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSCHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTTGEKPYECNECGRGFSERSGSHQTLSSPHRERPYECDECGELQSELRPCASSQSPHGREAIPL*", "T1-ONT/reads/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_638-1378": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQALKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGPNTGQG*", "T1-ONT/reads/0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGR*", "T1-ONT/reads/0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-782": "MVLLLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGQSHAGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2232": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHQLGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCILVAPTQYRISLQFDFFETEGNDVSRVQTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440": "MQINPCLLSSGSLHSVKTRPTKLCILSLAMQWLLFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDIV*", "T1-ONT/reads/0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-879": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPEYPGRS*", "T1-ONT/reads/0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1033": "MYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGKWKIKHLGLEDHKTLQSI*", "T1-ONT/reads/16a794dc-22f5-44f3-be2b-4a81af7366e5_0|orf_89-277": "MATLLTCTACGASLSHPEKDHPELHDPGPVPQPPVLVRLCGGPRRLLEEGAPPRPLLRVQTP*", "T1-ONT/reads/1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_696-1112": "MAPSVEKKLQKLEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKQKLQTFGDKVEDPTFLNQLQSGVNHWIREIQKVTKLNRVSSGTALQEISFWLNLERALSSRPGETGKPGSSPDSGYLETWQALPCHHQF*", "T1-ONT/reads/1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_1061-1375": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPPPPPRPLVRVQTPLSLSSPLTAASGSIPQQQQLGWKGLLAVYEAICGGDVKKDYGHIK*", "T1-ONT/reads/1946aa41-dae1-4d85-b155-f8e82b685bd9_0|orf_156-1103": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEARTLEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLWVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEIKLLAKLGTCVIPHPGETGEPGSSPDSGYLETWQALPCHHQF*", "T1-ONT/reads/195a827e-5198-4514-b1d8-191175137286_0|orf_580-1155": "MQINPCLLSLRLLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISPPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPGSSPDSGYLETWQALPCHHQF*", "T1-ONT/reads/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_472-1326": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSRLLSLSSPLTAASGLNSAAAAIGLERASLQSTKPSAGVM*", "T1-ONT/reads/1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423": "MQINPCLLSSGSLHSVKTRPTKLCILSLAMQWLLFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFRLGMMSMRNFRYC*", "T1-ONT/reads/1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-676": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPRKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053": "MPVLRLMESVTSPEDFVQRYLGLYNDPNSNPKIVQLFLAGVADQTKDGLISYEEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLEFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVAPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFLKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVGALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAAECFDPLPSLVLPWSLMNFSSGGFTLILEASNPLVQNQHLSHALQTFLLPTLITSVDTDSPQPRLQASKTNLAFISEI*", "T1-ONT/reads/1c945b47-476b-4713-95fa-a2612e6dcafe_0|orf_70-702": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGP*", "T1-ONT/reads/1e68f3b9-b9cb-491a-b618-6ccf1a1320e3_0|orf_123-1112": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEEGGEAPAALEAALEEKSALEQMRKFLLDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRSIREIQKVTELDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKRAGNCG*", "T1-ONT/reads/1f9cd0ee-44af-44de-ac2d-ef12e50f0d6f_0|orf_153-623": "MSSTRRLMGVSQGESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLRKAQDHRRA*", "T1-ONT/reads/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_511-1890": "MNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMLSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWDVKPNPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/reads/2296f36c-b15b-404d-b050-53e36afbd9dc_0|orf_944-1066": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T1-ONT/reads/23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIQNIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDAEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLRFIQEIEHALGLGPAKQCPLREFLTVYIKNIFLNQVLAEINKEIEGVTKTSDPLKILANADTMKVLGVQRPLLQVRIHFELTIFISNFH*", "T1-ONT/reads/2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351": "MQINPCLLSSGSLHSVKTRPTKLCILSLAMQWLLFLSPTLESLARQTGMGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLERDSETQNILSEGTAFGGGNFKRLEFSITQSIGH*", "T1-ONT/reads/25a8f774-4f25-490c-b04b-a91934728e4d_0|orf_699-1427": "MGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDLKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMEHALKFFRLGMMSMRNFRYC*", "T1-ONT/reads/279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/29863430-01c0-4e60-a76e-73806b2eb778_0|orf_103-1320": "MIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-ONT/reads/29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/2a0f27b5-e4be-4f3a-98aa-6181223dc077_0|orf_655-1110": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLNRLWKL*", "T1-ONT/reads/2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_1051-1932": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTSIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCKQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKIPPQQELHLAAGGPQYRISLQFDFLRRGQ*", "T1-ONT/reads/301deb91-0736-4cc9-a086-e889a64c133e_0|orf_990-2135": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLRSYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYGAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPQQELHLAAGGPHPVPHLPAV*", "T1-ONT/reads/32a28409-a2a8-4223-8672-7cae2e3d084c_0|orf_377-505": "MEEVNDRPVRRSGPIKKPVLERYERGTGTEEGERRRKGRKGH*", "T1-ONT/reads/33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-800": "MYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAITQFLSAAYDRYLRLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGNR*", "T1-ONT/reads/35c4c81a-83fb-4fc9-b67b-c93d0c76d9ab_0|orf_471-701": "MIRPSRCQHSSHFLSNPIQPYRRYRFHPRLSMIYPTLQKLVRPTTNSPSNANPSLTPLLGLLLATAGKSAQLGLHP*", "T1-ONT/reads/3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASEGGRGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2219": "MPGVARLPLLLSMLLPRPGRPLDWPTTPMTWRRRTTSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSSPAARAPTGSLRGEPVGDGEVDPVAGGRQRPDQSVCGPMGSSLVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGRVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFEVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/36dd17c7-b040-4472-9e1b-392a28d61036_0|orf_628-1254": "MIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEEVPVGLHSLRLGSARCLRGCVGQCQSYPGQHRVLGLELREQKVDHPGAHPGLHCAQLHPLHQYRPGARHQAAGDQRRPV*", "T1-ONT/reads/3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512": "MVIKWLLQLKRRLPELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVGTALKFFRLGMMSMRNFRYC*", "T1-ONT/reads/39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_228-488": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFFTRHELCDFRRWKWKIKHLGLEDHKTLQSI*", "T1-ONT/reads/39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_1152-2555": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTAHPPACMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGTPSEACQASRTPCYSGTSPWTGWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPCALPPPILMVSVTFPVVK*", "T1-ONT/reads/3a8f1ab6-9e53-4353-b06b-682a3c499e5a_0|orf_148-1098": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKVAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKTGEPGSSPDSGYLETWQALPCHHQF*", "T1-ONT/reads/3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_816-1235": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR*", "T1-ONT/reads/3b328881-f383-4456-bed7-7f12d0a59c31_0|orf_670-1449": "MKSQQRGRKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGNR*", "T1-ONT/reads/3b427a12-e877-4e70-8ab2-614b85d656b3_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDARTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442": "MSEPGGGGGEDSGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISKYLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDIV*", "T1-ONT/reads/3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKRAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKARKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/3f5c0d19-0fac-4e7a-8fb1-dfb80db80820_0|orf_193-1410": "MIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-ONT/reads/3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRFGGGNFKRLEFSITQSIGH*", "T1-ONT/reads/3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/3fdd8c14-36c7-47d8-bb50-9fe6094b1f3a_0|orf_143-478": "MGVSQRNPEMMSMQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLVGEPAKEENVDIEGLDPAPLRCLH*", "T1-ONT/reads/41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFKFSDLG*", "T1-ONT/reads/44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_708-1046": "MHSMPAVTLSPNGKSLACQSMDNQILSFGAQNRFRLNRKKYSALIPLSAISAPTESNTKTEPRQDTTRIATCLSLYLPTRRSSDLSRESGQYRFLIWAMLLAECPAGPERLL*", "T1-ONT/reads/46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-686": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKSAPS*", "T1-ONT/reads/49d41f4e-cac0-4f4d-bcf8-a7da3cb02d59_0|orf_257-1474": "MIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-ONT/reads/4cd4ed89-f6ce-47fa-aa61-aa8eb76f7f4d_0|orf_805-1170": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIF*", "T1-ONT/reads/4d98721c-6f0b-4e05-baa0-3e62e54dd473_0|orf_124-1287": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRSHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRWWRQFQET*", "T1-ONT/reads/4eaab93d-e358-4146-bc4c-416d549a2394_1|orf_381-479": "MEDVMQPFCIAVVGRHCKSSLTIKMSVFPYCL*", "T1-ONT/reads/5056a6c0-3dcc-4c39-9dc3-24e0a1b4da51_0|orf_648-1391": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDAQAQPEKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDFSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFNLG*", "T1-ONT/reads/53ae28fa-91a7-4e4a-b0f8-cfb837373bcb_0|orf_60-617": "MDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDEDRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFNTQQI*", "T1-ONT/reads/53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPLPWSGRG*", "T1-ONT/reads/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196": "MSKKFLDRLLFIIISLLTGIVRIIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGQDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRSTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYRNSFDCFKKESLAL*", "T1-ONT/reads/550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-790": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLNKTVQFLCRPGEIHALRAGSCHGLEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWISE*", "T1-ONT/reads/56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_253-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKKFMQASEDLLKEHFVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1671": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPSKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENKPPLS*", "T1-ONT/reads/578fad5e-8d0c-43c5-8bc7-0fdfaec3696a_0|orf_1400-1690": "MQVLCPCLASQVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWAHSGRDRPWSGEGINRSNPKGGQPGSPTHIPCTGEKGEGHSLPSCPG*", "T1-ONT/reads/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463": "MLFKIFRDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYSCQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/reads/5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVND*", "T1-ONT/reads/58ce1a8a-e9ec-411a-97c6-207011494a1d_0|orf_256-792": "MVLLSTLGIVFQRPGASLSQAVIQEPWPTVSVPSLRSNQMGSSGVLWENIIKCFEQKGFRLVGLKFMQSSRSSQEHYVDLREGPSILCRPGEIHALRAGSCHGLGGAECGEDGPSHARGDQPCRLQAWTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKVLAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/5b00e49a-f064-418e-89cc-27af642b38a0_0|orf_367-1137": "MRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFSLTLESLARQTGMVIKWLLQLKRRLQNSKMHLSLAQNIEIPEISLLIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLDLGDPNMASASMPPSVLTLTQV*", "T1-ONT/reads/5be35184-07ec-4868-9e07-77e7022e3bd0_0|orf_143-325": "MHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELALARRPRRLPPPLPATRAAGWL*", "T1-ONT/reads/5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437": "MALSVEKKIAELNGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALNRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNSMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLRSQLLKVLGTRKLMHVAYEEFEKVMVACFKFFRLGMMSMRNFRYC*", "T1-ONT/reads/5d801b9e-e275-4573-96f7-d66749aa7bd4_0|orf_743-2155": "MHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQRVCEPIMLTINMKDNKNAKYIENHIPSNDLRAFVFESQEDMEVFLKEVRDNKKLRVNAVIAPKSSYADKAPSRSLNELKQYGFFSYLRELFDAPDPVMSYLCCQYHIHEVPVGTEKTRERIERVIQETRLKQIYTAEEKYVVKTSFYSNKVISSNTSLKVAQFLTVTVDLEQRRHLEEQLKEIHRKLQAVDSGLIALT*", "T1-ONT/reads/6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_208-738": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTELCSELDL*", "T1-ONT/reads/60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_108-1439": "MAHVHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCPEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKGGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDVQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVSGKGRLSPRLFQWPLLLFTLREAHLIQRAVCPGGR*", "T1-ONT/reads/621a6c40-255e-46bf-858d-b1e285a2b81c_0|orf_470-712": "MIRPSRCQHSSHSSNPIQPYRRYRFHPRLSMIYPTLQLVRDPQQIALLNANPSLTPLLGLLLATAGKSAQLGLHLSSPQP*", "T1-ONT/reads/623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_675-1832": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/62aa7db6-24fd-44a6-a28f-88ad2da1f0ae_0|orf_273-1253": "MTSITKAMPTDAVTAMAAGSWCLGTTGRGPTTASVSNFSPMRLVNGRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSLGTKSGSSRCPSWPPLCSTSSSSSISSGCSPPSCGRPTPAGVTHGSSTGSCSNPRWCSCPSLASTTLSSWPHHTPRSQGHSGKSRCTMRCSSTPSRDFLSQSYTVSAMARYKLRSRNLEPLDTGTGLQAKGTQREQQL*", "T1-ONT/reads/63f84d9d-782a-4744-ae02-e4f4b966a222_0|orf_770-1894": "MLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLIGSCSGLDEEASGPERPPALLQEEWGDSHVTRRWGLDLLT*", "T1-ONT/reads/649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_175-708": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/64eb05f8-7cd9-4424-90bf-106dd82dbd7c_0|orf_691-1110": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPGSSPDSGYLETWQALPCHHQF*", "T1-ONT/reads/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2275": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENTQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPLFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEQTESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIPEGTAFGGGNFKRLEFSITQSIGH*", "T1-ONT/reads/653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_1145-2299": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPEYPPNKNCIWQLVAPTQYRISLQFDFFETKGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135": "MRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKISL*", "T1-ONT/reads/673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-697": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLAFLHTSWQEHYTWQ*", "T1-ONT/reads/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-1715": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNSQRGGRVLSAQPRGL*", "T1-ONT/reads/690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLKDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRHR*", "T1-ONT/reads/694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKRDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/6a514f69-ae36-4a38-9fb8-0831801f35fe_0|orf_28-168": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEGSP*", "T1-ONT/reads/6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220": "MHCVWRISVTPGEKIILNFTTLDLYRSRPCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFVVYGAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSNKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/6ca752c9-41bb-4e37-8e30-fbfb132a897e_0|orf_242-1291": "MENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTPENSGRESCSLKYSSGESCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTEDCENLQARLMPLQMI*", "T1-ONT/reads/6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKAFAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKEPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/6f55233a-6ac6-41f4-a90c-cfb03f75ff9b_0|orf_132-1082": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALCRIQEQTGEPGSSPDSGYLETWQALPCHHQF*", "T1-ONT/reads/6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_388-669": "MKTKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908": "MISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHTQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFTKSCVMRASLDSTGV*", "T1-ONT/reads/706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQAWDDEYEKLQVLLRDIVK*", "T1-ONT/reads/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1606": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T1-ONT/reads/711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_261-794": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_1008-1985": "MATLLTCTACGASLSHPGRDHPELHDPGPVPQPPVLVRLCGDPRWLLEEGAPPRPLLRRPGSSIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKRTMATFNRPTTQTITGPAKSASGGSRCLRASTWASHSSPLRLSATTAVPTTIWRCATGTVRAAPSSGRDRGRREPDDIKSTSSRLGSSLSLTGPLTKRALPSTFSKQADQRSRPDCGGCEQRCLNTLGSYKERDPGNQLAQTSAAVRLLVADSSPSSTAPSPARAGPGSTPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTARLQAAWQVLWF*", "T1-ONT/reads/756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169": "MWRTCRCCRSTCASWCRCCWRTAARRRPRWRRRWRRRAPWSRCASSFRTRRSTRAPVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREVQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVSHHNPLMNRFPSE*", "T1-ONT/reads/75bae4d7-f6a7-4a59-b0e7-c5bb8343831f_0|orf_464-1339": "MERRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAPHALRVAHLCHTRGEDHPELHDPGPVPQPPVLVRLCGGPRWLLEEGAPPRPLLRVQTP*", "T1-ONT/reads/77602395-6c56-45cb-9756-0a2616eee214_0|orf_131-2446": "MTWRRGGRLGAPQLQRPLQGGCLSWDIALDEEDLRAFQVQQAVDLDGTQLVSPPSKLQFQETLLPPAARAPTGSLRGEPVGDGEVDPVAGGRRMPPTRACVARWGHPLCHWGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGDVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDDGHIQLPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGTSWPQTSAAVRLLVADSSPSSTAPSPARAGPRSTPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T1-ONT/reads/79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257": "MQINPCLLSSGSLHSVKTRPTKLCILSLAMQWLLFLSPTLESLARQTGMVIKWLLQLKRRFRELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRESETQNILFRGH*", "T1-ONT/reads/79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-888": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEETTAPCLWVSSLRAWRN*", "T1-ONT/reads/7b36debd-f633-4644-8e15-fc7396eb273c_0|orf_16-1203": "MASEVPYASGMPIKKIGHRSVDSSGETTYKKTTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRYFRELFGIRPDDYLNLNQNPRTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHIKYDLKGSTYKRRASQKEREKPLPTFKDLDFLQDIPDGLFLDADMYNALCKTLQRDCLVLQSFEIMDYSLLMSIHNIDHAQREPLSSETQYSVDTRRPAPQKALYSTAMESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKKLEHSWKALVHDGDTVSVHRPGFYAERFQRFMCNTVFKKIPLKPSPSKKFRSGSSFSRRAAPVATPALLTSHRSLGNTRHK*", "T1-ONT/reads/7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460": "MQINPCLLSSGSLHSVKTRPTKLCILSLAMQWLLFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSVTELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFRLWDDEYEKLQVLLRDIV*", "T1-ONT/reads/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-1331": "MPGVARLPLLLGLLLLPRPGRPLDLAQGTYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGETQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNRVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLEAASAGPNSLSLSSPLTAASGLNSAAAAIGLERASLQSTKPSAGVM*", "T1-ONT/reads/828547de-dda4-4188-b1ff-f67e1cb93f62_0|orf_1541-1864": "MLLFPQVPSHPSPTSPQAWPGTWTGSHWMRSTTTGRRSGGGSSPRAWARGFDRACSGWASACLVRGCGASHLSVLQQAEMQGLPGLGNFAFCLGMTRKCSEKVRHLL*", "T1-ONT/reads/849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-702": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKGVSACGFTLRNW*", "T1-ONT/reads/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALSLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEASELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITLDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/reads/87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1671": "MHYARTHSPGASSWDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYQPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDGIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEQPLVADSSPSSTAPSPARAGPRSTPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPVRPARPPGPLVTQEPHLGRNGMGASVPTNPPPPLCHSGPPPSGRTELVLSSPHCARPRTGDPSPCPTPSHFDGVCDISCCE*", "T1-ONT/reads/88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-340": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSRS*", "T1-ONT/reads/89769e07-e24c-42c0-a13b-84b9c6d7ca7d_0|orf_94-240": "MGYPCGFQVHSRTQYALNACSDFVSKWKIASMPINGQPNLNFWSTEQI*", "T1-ONT/reads/8ab432ea-4b95-482f-8b96-26ec6175ef68_0|orf_28-303": "MAAEAAGGKYRSTVSKSKDPSGLLISVVRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSQQTSR*", "T1-ONT/reads/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPSCQP*", "T1-ONT/reads/8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-678": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPRSNR*", "T1-ONT/reads/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-633": "MSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLTFGTGRPQNSTVDLKLMIKCV*", "T1-ONT/reads/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415": "MTALWGGGASRLSLLCPLHPVVPELGCFRPHPPSPPSPALQMPSPQSLRAPSLVFQGWTYAIDFPATYTKDKKWNSCVRRRKWIRYRRYKSRDIWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGRCGSEEASTLTIPAAPVGLRWLVR*", "T1-ONT/reads/8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788": "MVLLSLLGIVFQGEGPPISSCDTRTMANCERTFITIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/8fabbf01-940a-432f-9d5c-692e3a35c9e3_0|orf_687-1124": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILANMASASMPPSVLTLTQV*", "T1-ONT/reads/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_674-2644": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTILPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGSGAHQPPTSTLPFRPTSLWPDRTGALSPTVPVRGPGTLPRALPPPILMVSVTFPVVK*", "T1-ONT/reads/91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_199-636": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASVDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETQPCRLQAWDHPWRLLHTSWQEHYTWQ*", "T1-ONT/reads/924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450": "MQINPCLLSSGSLHSVKTRPTKLCILSLAMQWPLFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDIV*", "T1-ONT/reads/92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-774": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWKAECGGRRSVMLGETNPHLKPGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNCRLHELCSELDL*", "T1-ONT/reads/93badf9d-4eab-4d97-9d70-50b622c5da9c_0|orf_176-412": "MVLLSTLGIVFQGEGPPSQAVIQEPWPTVSVPSLRSNQMGSSGVLWERLSSVLSKRIPPCWSEIHEASEIFSRNTTLT*", "T1-ONT/reads/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623": "MELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPERPLN*", "T1-ONT/reads/99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_48-665": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLSKKAASGEAKPKVKGGGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAP*", "T1-ONT/reads/9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_257-790": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLEETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/9a636625-9675-45a6-a24e-29f18d8811e3_0|orf_60-758": "MSLAGGRAPRKTAVKPAFGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPKRKCREVTRAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLLEAKITEELNLRSLETYERLEADKKKQVHKKAEVPRAHNHLSFSDSATCWGARPQGRER*", "T1-ONT/reads/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_120-2036": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAAYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEGCYDLQLLVADSSPSSTAPSPARAGPRSTPPTELHLAAGGPHPVPHLPAV*", "T1-ONT/reads/9d685284-1311-4718-9b78-003d57de1a72_0|orf_496-1068": "MQINPCLLSSGSLHSVKTRPTKLCILSISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALCRIQETGEPGSSPDSGYLETWQALPCHHQF*", "T1-ONT/reads/9d81ec89-0576-401a-80ee-39c7942f21a1_0|orf_235-1335": "MTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVESSLGQHRVLGLELREQKVDHPGAHPGLHCAQLHPLHQYRPGARHQAAGDQRRPV*", "T1-ONT/reads/9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/9f5a3bea-c850-4c99-b79f-a7c9c543a90e_0|orf_165-1607": "MTSITKAMPTDAVTAMAAGELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPSAPAYCPLPPPTATLSCLAMPSQGPQPWRPSRPHHLPWLLPRTMGSSTAPAQAWTRRPLGLSGHLPCYRKSGRQSCDQALGAGPADIVDGQMDQKMGG*", "T1-ONT/reads/9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKYLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLKFSITQSIGH*", "T1-ONT/reads/a0dc8337-844f-4153-a293-1e0cf5c6194d_0|orf_3027-3371": "MQAQWEALGSLSREKAACTLVSASDPALCVVCCPPGQQAEERDGSPPARAAVQRAWLSDPEEVSTPCIPEHGGAAPHPGSPPVLSVSLSFSPFPPFSKCGSLIIQFKFCSTGIS*", "T1-ONT/reads/a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_786-1838": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFPIDISKFIYQPQD*", "T1-ONT/reads/a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183": "MQWLLFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQEVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYDIL*", "T1-ONT/reads/a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/reads/a3a8bd63-12de-4ea5-b5b3-6b56c6bd437c_0|orf_21-605": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHYKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELSQQEDEPSLGSHR*", "T1-ONT/reads/a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-692": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSASDCHGLGGAECGEDGPSHARGGKPTLQTPSLGPSIETTASSWQEHYTWQ*", "T1-ONT/reads/a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_244-567": "MGPEMVLLSTLGIVFQGEGPPISSCDTRTMANCERFIAIKPDGVQRGLVGEIIKRFEQKVFRLVGLKFMQASEDLLKEHYVDLKDRPFFAARETHAPGPVVAMLWRG*", "T1-ONT/reads/a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_1049-2461": "MATLLTCTACGASLSHREKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLPGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKEASSAAPSGTPPPAQIPSAEKKPDPPVRPARPPGPLVTQEPHLGRNGTGLWCPPTPHLHSAIPAHLPLAGQNWCSLLPTVPVRGPGTLPRALPPPILMVSVTFPVVK*", "T1-ONT/reads/a60c1f20-8dc9-4d0c-94d2-fffb289fb370_0|orf_18-566": "MGGSPRVQDGGRSSWWEIQKHSQQKQRPLGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVRLGGPPAPGGRTE*", "T1-ONT/reads/a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKRAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/a7182491-a967-4009-9b73-d535edfd9a19_0|orf_252-785": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_464-1465": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPAVERPCKTAQATSLSADPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFGRKAPLRGRFCGRLLSLSSPLTAASGLNSAAAAIGLERASLQSTKPSAGVCEKGLWPHSIAQLPRRLPAQQSLHRRIQVSEGFHVALAHSSPLRLSATTAVPTTIWRCADGNSQSSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSLDRGGCEQRCLNTLGSYKCSCDPGYELAPEERRC*", "T1-ONT/reads/a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRNRLRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQVRAFYKGCHLDSE*", "T1-ONT/reads/a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-377": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLPCKMLLHCKRDELETVD*", "T1-ONT/reads/a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-671": "MWTTLAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTNGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSESLNYKDPCKAAASLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPRAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSLEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/a9f68257-cc93-45df-a17f-827ca399c4fa_0|orf_389-1558": "MTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPQKMGG*", "T1-ONT/reads/ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_407-595": "MPWGSLMGFTQYMALTTSKCVPWSGVGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T1-ONT/reads/acd199cf-3c4d-4dfc-bed2-0f986f934d5a_0|orf_315-677": "MEEVNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTEKVVVKPEKTEKKDLPPPPPPPQPPAPIQPQSVPPPIQPEAEKFPSTETATLAQKPSQDTEKPLEPVSTVQVSLQLRL*", "T1-ONT/reads/acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/ae536cc9-de46-4177-9de6-38040ef30174_0|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKMGPVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_376-1218": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWGQCPQNTWGGYPGRS*", "T1-ONT/reads/af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETRPSASKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVRKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_838-2277": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_788-2227": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_782-2221": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/b47ba852-1539-4eba-b9ef-fd758dc23783_0|orf_176-712": "MVLLSTLGIVFQGEGPPISSCDTRAMANCERTFIAYPNQMGSSGVLWAEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-1338": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLNKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVGFAAAAIGLERASLQSTKPSAT*", "T1-ONT/reads/b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVKAPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573": "MVLLSLLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVACPWSGRG*", "T1-ONT/reads/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1165": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVGRSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPTSGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLETGFGNCE*", "T1-ONT/reads/bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKGLAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/bd4a8c34-4304-4316-840d-f786c94cdbde_0|orf_21-686": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKSAPS*", "T1-ONT/reads/bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_255-668": "MMWRNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_547-2277": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPRAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPREYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGALPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/be49f935-b9db-4ca2-9d2d-89bdde0fc623_0|orf_20-274": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYPQIDDSHSHIPEHHRAHR*", "T1-ONT/reads/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1485": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAREVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFL*", "T1-ONT/reads/becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-1312": "MPGVARLPLLLGLLLLPRPGLPPDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGCKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLATVPQPPVLVRLCGGPRWLLEEGAPPRPLLRVQLPESYRLH*", "T1-ONT/reads/bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1136-2533": "MHCVWRISVTPGEKIILNFTTLDPYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKMDDGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYEAAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTDGMGASFMLTPHLHSAIPAHLPLAGQNWCSLLPTVPVRGPGTLPRALPPPILMVSVTFPVVK*", "T1-ONT/reads/bfb54451-9a28-4683-99c0-54273114b797_0|orf_323-1558": "MTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGELYPESEESKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMH*", "T1-ONT/reads/bfbed6d6-5908-4882-ad8e-4b7dd2338c18_0|orf_34-408": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLHARCCCTANGMSFGNCGLKELSISMS*", "T1-ONT/reads/c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_260-793": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/c3babc12-4893-470e-a215-b2132f0ce159_0|orf_253-747": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPQTPSPGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNW*", "T1-ONT/reads/c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423": "MGLNPIASAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACLKFFRLGMMSMRNFRYC*", "T1-ONT/reads/c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_261-677": "MMWRKTTAVSNLVLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/c636d334-25cd-4399-92be-908849313083_0|orf_252-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKGFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFFAGLVKYMHSGPVVAMVWEGLNVVETGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-694": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWGGAECGEDGPSHARGDQPCRLQAWDHPWRLLHTSWQEHYTWQ*", "T1-ONT/reads/c67d6556-7055-417f-a503-2e66f3ef5d5b_0|orf_6-851": "MRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLDLLLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T1-ONT/reads/c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVLAVEPLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVAQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/reads/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2233": "MPGAARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYGDEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-667": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGETKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/c8b63fd4-61f2-4ec3-930f-74751f25cb5b_0|orf_705-1361": "MIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-ONT/reads/c8cbc7fc-ed01-49c3-a69e-4b29120b686f_0|orf_123-710": "MYNALCKTLQRDCLVLQSFKIMDYSLLMSIHNIDHAQREPLSSETQYSVDTRRPAPQKALYSTAMESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKKLEHSWKALVHDGDTVSVHRPGFYAERFQRFMCNTVFKKIPLKPSPSKKFRSGSSFSRRAAPVATPALLTSHRSLGNTRHK*", "T1-ONT/reads/ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1471": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRINKAGKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLGLDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/reads/cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-664": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGVCKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/cbfe0f1f-d0d8-400e-988d-4c470d9cb440_0|orf_34-408": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEECDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELGNCGLKELSISMS*", "T1-ONT/reads/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1222": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYQDPCKAAAFLGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKHRCEAAAAASPHQAQRLHHQPGLAQGVPPQQELHLAAGGPHPVPHLPAV*", "T1-ONT/reads/cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_256-549": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYITAGR*", "T1-ONT/reads/d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_1055-2212": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLRFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKRQPPGKPSPRLKRRAEPKLKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/d685e368-b0c5-4e0d-8724-b072a9910182_0|orf_125-1366": "MRQGYQRELLYQREDGSFSAFGNYDPSGSTWLSAFVLRCFLEADPYIDIDQNVLHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPVTLTAYIVTSLLGYRKYQPNIDVQESIHFLESEFSRGISDNYTLALITYALSSVGSPKAKEALNMLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLLFQTSEGIPIMRWLSRQRNSLGGSASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNF*", "T1-ONT/reads/d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_255-689": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYHALRAGSCHGLGGAECGEDGPSHARGDQPCRLQAWDHPWRLHTSWQEHYTWQ*", "T1-ONT/reads/d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVGDCVPLGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/d72ed346-e148-4306-b9df-06ced2371069_0|orf_237-743": "MGPEMVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGRRTLQTPGLGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNW*", "T1-ONT/reads/d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_720-1874": "MHCVWRISVTPGEKIILNFTTLDLYRNRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACEFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-692": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIPWRLLHTSWQEHYTWQ*", "T1-ONT/reads/db43d41f-c259-4c20-bb37-440614e193cb_0|orf_1118-2542": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEARDGFWRKAPLRGCFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWHRGVEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKEASSAAPGTPPPAQIPSAEKKPDPPVRPARPPGPLVTQEPHLGRNGMGASVPTNPPPPLCHSGPPPSGRTELVLSSPHCARPRTGDPSPCPTPSHFDGVCDISCCEVKEGPLRPAP*", "T1-ONT/reads/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_693-1781": "MKSQQRGRKKENRKKRNLGRRRQSYMLKKCMTIKAGPIFTYQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/reads/dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-832": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRFEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQEASRKI*", "T1-ONT/reads/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_914-2512": "MHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPGDAPTSSNSECRKETGPPSEACQASPDPLLLRNLTLDGMGWGLRCPPTPHLHSAIPAHLPLAGQNWCSLLPTVPVRGTGDPSPCPTPFPF*", "T1-ONT/reads/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642": "MELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLGDPC*", "T1-ONT/reads/e1358c50-3281-4fc7-809d-e0ae8b86a358_0|orf_538-843": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLQCFYCC*", "T1-ONT/reads/e206a252-3024-46c7-8156-de253524f53a_0|orf_204-737": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWSHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_193-1593": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVTKRTMATFNRPTTQTITGPAKSASGGSRCLEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNQTPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPSPPILMVSVTFPVVR*", "T1-ONT/reads/e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-924": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELQNLSIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMSVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIQKQLRQS*", "T1-ONT/reads/e4fd6bf3-78f2-4ac0-b2d4-c8a968ec3e58_0|orf_65-1159": "MSLAGGRAPRKTAGNQLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHGERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T1-ONT/reads/e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-791": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVSVLGEANPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_405-764": "MENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYREAHLIQRAVCPGGR*", "T1-ONT/reads/e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLGKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFNLG*", "T1-ONT/reads/ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-667": "MSETAPAAPAALLLQKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGVFGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVARSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/ef0673c0-ff11-4c28-9d9b-6ef6b99c096d_0|orf_17-190": "MAAEAAGATEAQSAKAKTSAADLAIRTRRRLTMSKTGKMKRVALKKPTRNVTVTWMN*", "T1-ONT/reads/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_963-2390": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHVSSPPPSSGATVAMRSLMTSRARPAASGSSSSLTGPLTKRALPSTFSKRWTSALGPTAGAVSSGASTPWAATSAAVTPGTSWPQTSAAVRLADSSPSSTAPSPARAGPRSTPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPRTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPPATIPCRKRTEPQ*", "T1-ONT/reads/efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDY*", "T1-ONT/reads/f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELEQNKTGACCHFHTFEKDPKHKISYSEGTAFGGGNFKRLEFSITQSIGH*", "T1-ONT/reads/f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-ONT/reads/f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHDADLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSWCSELDL*", "T1-ONT/reads/f21da920-255e-4911-bbc2-79980989d93c_0|orf_319-831": "MLRKSTVMRPPSGTWNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFQFHPLSDFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-ONT/reads/f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-690": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKSAPS*", "T1-ONT/reads/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_937-2322": "MHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-ONT/reads/f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/f47d46c2-e2c3-4c6d-9b90-c8b842b403f2_0|orf_128-496": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKTTALHPIAQLPRRLPAQQSLHLADPGV*", "T1-ONT/reads/f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529": "MITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDCNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNAKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDIVK*", "T1-ONT/reads/f5d24ee8-996c-41c4-a34f-e129dd82bf8d_0|orf_887-1150": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLNLEVKPI*", "T1-ONT/reads/f66a2949-a6ba-4629-bf49-02044320b170_0|orf_117-1067": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYDTLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMDSFTCSKILKFRRSACRFIPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEQTGEPGSSPDSGYLETWQALPCHHQF*", "T1-ONT/reads/f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473": "MGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRELMHVAYEEFEKVMVACFEVFRLGMMSMRNFRYC*", "T1-ONT/reads/f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPLLRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSFHAISMSAYLREQRRELYSRSGELQGE*", "T1-ONT/reads/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-1784": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQLPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPRQAPL*", "T1-ONT/reads/f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/f9c7bab3-d2e2-48cf-9392-88547e4d79e6_0|orf_203-589": "MSFCVRAQTAANRVVIAPKHSVRVWISGLFSARGWKRMSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T1-ONT/reads/f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-ONT/reads/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_153-1784": "MHLTKSPSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHINDFMFEQQKGETFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKLSEEEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/reads/fb500eee-ab27-49ba-8228-1b7dd2e9ae07_0|orf_58-762": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPRGKEALT*", "T1-ONT/reads/fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLLIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDIVKRKREENLKMVWHINPAHRKLQARLDQMRKFRRQHEQLRAVIVRVLRPQVTAVAQQNQGEVPEPQDMKVAEVLFDAADANAIEEVNLAYENVKEVGGLDVSKEGTEAWEAAMKRYDERIDRVETRITARLRDQLGTAKNANEMFRISPGLMHCLSGLTSVGPLANTRPS*", "T1-ONT/reads/fe5ab0b0-5e17-40f9-aa58-2121eccccac0_0|orf_20-685": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSS*", "T1-ONT/reads/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217": "MYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T1-ONT/reads/ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/assembly/1990|orf_180-713": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/assembly-ms1/1998|orf_180-713": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/assembly-ms1/2228|orf_181-1059": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE*", "T1-PacBio/assembly-ms1/374|orf_243-566": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-PacBio/assembly-permissive/1847|orf_535-1068": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/assembly-permissive/1936|orf_168-491": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-PacBio/assembly-permissive/286|orf_203-1081": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE*", "T1-PacBio/assembly-unspliced/1999|orf_253-786": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/10053416|orf_34-2226": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/10064376|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10178021|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10189342|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1019294|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1019374|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10239609|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/1025464|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10342080|orf_230-763": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/10343427|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10554216|orf_29-655": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10599306|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/10602017|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1060653|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10717497|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10732355|orf_120-1013": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLGTCVIPHPGETGEPGSSPDSGYLETWQALPCHHQF*", "T1-PacBio/corrected/molecule/10795793|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1080066|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10933706|orf_120-2312": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/10937825|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/10965437|orf_25-651": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/11027571|orf_564-2294": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/1113042|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1113063|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1113255|orf_10-636": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/115464|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1161327|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/120934|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1214036|orf_234-767": "MVLLSTLGIVFQGEGPLISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/1214434|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1267085|orf_225-758": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/1268463|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1319565|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1359040|orf_252-785": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/1413780|orf_19-645": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1538081|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1555089|orf_263-796": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/1603489|orf_241-774": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/1657276|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/1723051|orf_211-2403": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRPQLVSPPSKLQFPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/174187|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/174199|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1796000|orf_233-766": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/1801550|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1801561|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1882867|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1896631|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/1904314|orf_231-764": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/1962053|orf_224-757": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/2235207|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/2243892|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2274290|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2277834|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2302647|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2369244|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2432711|orf_246-779": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/2502925|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2557105|orf_225-758": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/2579186|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2600411|orf_11-685": "MGIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2629266|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2629282|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2629287|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/271837|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2721423|orf_245-778": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/2817741|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/2904375|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3005554|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3031815|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3085879|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3103885|orf_25-2217": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/3158192|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3199407|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3246875|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3277802|orf_225-758": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/3369384|orf_130-3090": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLRFYSDNSVQRKGFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGYGVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHSDDTITKKGFHLRYTSTKFQDTLHSRK*", "T1-PacBio/corrected/molecule/3493006|orf_28-654": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3496939|orf_19-645": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3517396|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3580456|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3619747|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3619751|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3619768|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3650643|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3664114|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3748101|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3784489|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3902661|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3907167|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3909094|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/3991115|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4068210|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4086372|orf_228-761": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/409052|orf_235-2226": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/4111036|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4120169|orf_245-778": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/412686|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4221078|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4244472|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4295386|orf_30-656": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4433251|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4463788|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4473974|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4502938|orf_120-1322": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDCGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVECSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRN*", "T1-PacBio/corrected/molecule/4505550|orf_246-779": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/4505591|orf_236-769": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/4537471|orf_42-2234": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/4537485|orf_32-2068": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-PacBio/corrected/molecule/4541236|orf_241-774": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/4556021|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4634496|orf_244-567": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-PacBio/corrected/molecule/4701424|orf_226-759": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/4712523|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/4732600|orf_27-2219": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/4736184|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/4771990|orf_46-1140": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T1-PacBio/corrected/molecule/4837536|orf_52-1434": "MHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSGGLNGDQQPLAQPLSADPPGQEISPSL*", "T1-PacBio/corrected/molecule/4872135|orf_25-1119": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T1-PacBio/corrected/molecule/4928203|orf_246-779": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/5090184|orf_224-757": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/5167467|orf_47-661": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5236959|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5303072|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5373963|orf_253-786": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/5423741|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5426151|orf_92-1351": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEHRSQ*", "T1-PacBio/corrected/molecule/5497944|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/557027|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5618961|orf_252-785": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/5642927|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5696462|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/575063|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/575078|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5779419|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5801272|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5811592|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/5812246|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5839747|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/5907924|orf_825-2312": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAK*", "T1-PacBio/corrected/molecule/6205103|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6227211|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6229052|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6242703|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6267171|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6336447|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/6361521|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6368826|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6368908|orf_28-654": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/638297|orf_199-732": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/6394319|orf_234-557": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-PacBio/corrected/molecule/6406178|orf_91-1254": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRWWRQFQET*", "T1-PacBio/corrected/molecule/6458552|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6504865|orf_8-1816": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLRFYSDNSVQRKGFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGYGVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHSDDTITKKGFHLRYTSTKFQDTLHSRK*", "T1-PacBio/corrected/molecule/6506733|orf_35-661": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6592287|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6654287|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6654941|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6659006|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6707164|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6707170|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/6775392|orf_39-656": "MGVGASPGAGCPESTSPQGGMGHTGWPEWPETHMPETGIRWWVGVHEWAGLGASPQTDEWNKCIPQDHRNPGFAFFGRGRGQGVRSGRSGDMGPTPTTPRPPCLAGVNELMQVLCPCLASQVWYREDVSHSNPEGSSWSLLDTPGRWFRSAVGPTTSCGHTLGGTGPGPGRNQQEQSQRWQPGSPTHIPCTGEKGEGHSLPSCPG*", "T1-PacBio/corrected/molecule/6921434|orf_16-1797": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLRFIQEIEHALGLGPAKQCPLREFLTVYIKNIFLNQVLAEINKEIEGVTKTSDPLKILANADTMKVLGVQRPLLQVIIHFELTIFISNFH*", "T1-PacBio/corrected/molecule/6923299|orf_243-776": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/6990504|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7019152|orf_257-1039": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPWAGEVHELRAGSCHGLGGAERGEDRPSDAWGDQSSRFKARHHSWGLLHSGWQEHHSWQ*", "T1-PacBio/corrected/molecule/7026565|orf_9-635": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7132448|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7145314|orf_245-778": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/7216973|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7246117|orf_32-2068": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T1-PacBio/corrected/molecule/7273585|orf_46-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7279353|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7541603|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/754378|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7606410|orf_81-2900": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLRFYSDNSVQRKGFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGYGVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHSDDTITKKGFHLRYTSTKFQDTLHSRK*", "T1-PacBio/corrected/molecule/7620765|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7638135|orf_251-784": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGLVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/7732877|orf_234-767": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/7739018|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7740558|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7752404|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/780783|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/7964253|orf_118-1281": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRWWRQFQET*", "T1-PacBio/corrected/molecule/7967093|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/8037313|orf_18-539": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQRKD*", "T1-PacBio/corrected/molecule/8063840|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/8063908|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/8093175|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/8146590|orf_240-773": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/8154416|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/8510053|orf_223-756": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/8684285|orf_243-776": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/8763893|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/8763895|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/8803526|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/8845255|orf_244-777": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/corrected/molecule/8866884|orf_120-2312": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/8904710|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/8953142|orf_16-543": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPPAPGGRTE*", "T1-PacBio/corrected/molecule/8976671|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9254182|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9281724|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9344838|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9461903|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9491565|orf_29-919": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKIRLKRLFAISVLWQCRIGRNIFCFPECCCNLFYFSFNGLSLKLEDGFIIANTPCSERLTFEVCSFIHSTFIMVLFCKDI*", "T1-PacBio/corrected/molecule/9535324|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9541363|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9541370|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9541377|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9559770|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9559773|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9665833|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9676206|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9716734|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9755126|orf_233-556": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-PacBio/corrected/molecule/9761681|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9853399|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/corrected/molecule/9868923|orf_125-2317": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/corrected/molecule/9975242|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/isonform/0_0_2|orf_11-685": "MGIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/isonform/1_0_32|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/10053416|orf_34-1758": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSPIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKVQL*", "T1-PacBio/reads/molecule/10053490|orf_302-1708": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFCRNHILFLQWRGTS*", "T1-PacBio/reads/molecule/10178021|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/10239609|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/1025464|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/10342080|orf_230-763": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/10343427|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/10448657|orf_320-2101": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/10518723|orf_300-2081": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/10599306|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/10602017|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1060653|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/10653919|orf_594-1265": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSHYSKYWALGN*", "T1-PacBio/reads/molecule/10717497|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/10795793|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1080066|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/10860455|orf_193-1974": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTTTTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/10937825|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/11017826|orf_27-302": "MSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T1-PacBio/reads/molecule/11021917|orf_19-393": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRMSFGNCGLKELSISMS*", "T1-PacBio/reads/molecule/11027571|orf_564-2504": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T1-PacBio/reads/molecule/1113063|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1161327|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/120934|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVFSGCSEKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKATGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1214036|orf_234-767": "MVLLSTLGIVFQGEGPLISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/1214434|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1225564|orf_68-949": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKSLFVRSVQ*", "T1-PacBio/reads/molecule/1267085|orf_225-758": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/1268463|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1319565|orf_43-669": "MSETAPAAPAAAPPVEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1538081|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1555089|orf_263-796": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/1603489|orf_241-774": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/1657276|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/1668310|orf_301-2082": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/174187|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGVTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1796000|orf_233-766": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/1882867|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1896631|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/1904314|orf_231-764": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/1962053|orf_224-757": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/2235207|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/2243892|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/2277834|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/2307456|orf_857-1702": "MHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYREAAQIHAGAHAPLWRPLHCLHGHTIHRGLRTLWQVQMHYEMLFNSFQGFLSQSYTVSAMARYKLRSRNLGAAGHWHWTSSERHAAGAAAIATAPWCPTQV*", "T1-PacBio/reads/molecule/2369244|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALATAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/2432711|orf_246-779": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/2481063|orf_649-1314": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQGACCHFHTFEKDPKHKISYSEGTAFGGGNFKRLEFSITQSIGH*", "T1-PacBio/reads/molecule/2502925|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/2557105|orf_225-758": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/2600411|orf_11-685": "MGIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/2629282|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/2629287|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/271837|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/2721423|orf_245-778": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/2754995|orf_467-1114": "MQINPCLLSSGSLHSVKDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFL*", "T1-PacBio/reads/molecule/2924331|orf_762-1142": "MLQNSVMSVEKKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDSL*", "T1-PacBio/reads/molecule/3005554|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3031815|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3085879|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3103885|orf_25-2217": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/reads/molecule/3104854|orf_120-1373": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACF*", "T1-PacBio/reads/molecule/3158192|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3217266|orf_74-514": "MMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T1-PacBio/reads/molecule/3246875|orf_259-675": "MMWRKTTAVSNLVSRAWVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3277802|orf_225-758": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/3312891|orf_187-1968": "MGTARIAPGLALLLCCSVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/3369384|orf_130-3141": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLRFYSDNSVQRKGFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGYGVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHSDDTITKKVSTCDTPAPSSRTHSTAGSDHCLSRGGDWSLLPLVA*", "T1-PacBio/reads/molecule/3466631|orf_19-939": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQE*", "T1-PacBio/reads/molecule/3488313|orf_19-684": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDDYTGTCTSNRLAELCSVTRKKGKSAPS*", "T1-PacBio/reads/molecule/3493006|orf_28-654": "MSETAPAAPAAAPPAEKAPVKKKVAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3496939|orf_19-645": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3580456|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3619747|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3619751|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3619768|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3624875|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVAKPKKAAPKKK*", "T1-PacBio/reads/molecule/3664114|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3843360|orf_8-382": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCNGMSFGNCGLKELSISMS*", "T1-PacBio/reads/molecule/3902661|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKSAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3909094|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/3991115|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/4086372|orf_229-762": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/4111036|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/4120169|orf_245-778": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/4284163|orf_19-540": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQSWNSAWPASTISVPLTCWCQQLSLWRAPCSRWKD*", "T1-PacBio/reads/molecule/4308644|orf_1093-2019": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHGESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFQRGGRVLSAQPRGL*", "T1-PacBio/reads/molecule/4433251|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/4473974|orf_42-719": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKKIGERLLLKPKGSFQSHH*", "T1-PacBio/reads/molecule/4484901|orf_301-2082": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/4505550|orf_246-779": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/4505591|orf_236-769": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/4537471|orf_42-2444": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNYIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T1-PacBio/reads/molecule/4537485|orf_32-1474": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGL*", "T1-PacBio/reads/molecule/4541236|orf_241-774": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/4556021|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/4600551|orf_120-1361": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVLMKNLKKLW*", "T1-PacBio/reads/molecule/4701424|orf_226-759": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/4732600|orf_27-2219": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/reads/molecule/4736184|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/474481|orf_84-1178": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDTVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T1-PacBio/reads/molecule/4761662|orf_811-1314": "MSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWGYPCGFQVHSRTQYALNACSDFVSKWKIASMPIMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWTGRPQNSTVDLKPHDKVLYRCSVASS*", "T1-PacBio/reads/molecule/4771990|orf_46-1140": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTIYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T1-PacBio/reads/molecule/4837536|orf_52-1434": "MHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSGGLNGDQQPLAQPLSADPPGQEISPSL*", "T1-PacBio/reads/molecule/4872135|orf_25-657": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKRSRFIRSGSAPGP*", "T1-PacBio/reads/molecule/4928203|orf_246-779": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/493572|orf_19-288": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSEIK*", "T1-PacBio/reads/molecule/5108716|orf_225-425": "MENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRK*", "T1-PacBio/reads/molecule/5316176|orf_301-2082": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/5373963|orf_253-690": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGGLLHTSWQEHYTWQ*", "T1-PacBio/reads/molecule/5423741|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKSVGCAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/5426151|orf_92-1351": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEHRSQ*", "T1-PacBio/reads/molecule/5462567|orf_68-1537": "MRQGYQRELLYQREDGSFSAFGNYDPSGSTWLSAFVLRCFLEADPYIDIDQNVLHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPVTLTAYIVTSLLGYRKYQPNIDVQESIHFLESEFSRGISDNYTLALITYALSSVGSPKAKEALNMLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T1-PacBio/reads/molecule/5497944|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/5618961|orf_252-785": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/5642927|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/5696462|orf_42-644": "MSETTPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKGCEAQGCQA*", "T1-PacBio/reads/molecule/5779419|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKEAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/5801272|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKSKKAAPKKK*", "T1-PacBio/reads/molecule/5811592|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/5812246|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/5912978|orf_271-1587": "MTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYGGCDLLPLLPGHQLLLDSGGGAVPAQPHLHGLLLREEVPVGLHSLRLGCWDLSSGNKKWIIQVPSWPPLCSTSSSSSISSGCSPPSCGRPTPAGVTHGSSTGSCSNPRWCSCPSLASTTLSSWPHHTPRSQGRSGKSRCTMRCSSTPSRDFLSQSYTVSAMARYKLRSRNLGALDTGTGLQAKGTQREQQL*", "T1-PacBio/reads/molecule/591851|orf_92-1078": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLNRLWKL*", "T1-PacBio/reads/molecule/6041878|orf_865-2148": "MIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVSILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSAQAWTRRPLGLSGHLPCYRKSGRQSCDQALGAGPADIVDGQMDQKMGG*", "T1-PacBio/reads/molecule/6041883|orf_301-2082": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAGRLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/6227211|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6229052|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6242703|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6267171|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6336447|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/6359157|orf_263-2044": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEGQGGTHWQQVPRAPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/6361521|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6368826|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6368908|orf_28-654": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/638297|orf_199-636": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWGGAECGEDGPSHARGDQPCRLQAWDHPWRLLHTSWQEHYTWQ*", "T1-PacBio/reads/molecule/6394319|orf_234-557": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-PacBio/reads/molecule/6429240|orf_259-2070": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGPQPWRPSRPHHLPWLLPRTMGSSTAPAQAWTRRPLGLSGHLPCYRKSGRQSCDQALGAGPAE*", "T1-PacBio/reads/molecule/6456687|orf_56-556": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPTVSGH*", "T1-PacBio/reads/molecule/6458552|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6504865|orf_8-1816": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLRFYSDNSVQRKGFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGYGVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHSDDTITKKGFHLRYTSTKFQDTLHSRK*", "T1-PacBio/reads/molecule/6505156|orf_67-1161": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T1-PacBio/reads/molecule/6506733|orf_35-661": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6650045|orf_120-1211": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTH*", "T1-PacBio/reads/molecule/6654287|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6659006|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/6703896|orf_287-1693": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFCRNHILFLQWRGTS*", "T1-PacBio/reads/molecule/6775392|orf_39-656": "MGVGASPGAGCPESTSPQGGMGHTGWPEWPETHMPETGIRWWVGVHEWAGLGASPQTDEWNKCIPQDHRNPGFAFFGRGRGQGVRSGRSGDMGPTPTTPRPPCLAGVNELMQVLCPCLASQVWYREDVSHSNPEGSSWSLLDTPGRWFRSAVGPTTSCGHTLGGTGPGPGRNQQEQSQRWQPGSPTHIPCTGEKGEGHSLPSCPG*", "T1-PacBio/reads/molecule/6789812|orf_7-1230": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQVRAFYKGCHLDSE*", "T1-PacBio/reads/molecule/6907197|orf_287-1129": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKSSMGQCPQNTWGGYPGRS*", "T1-PacBio/reads/molecule/6923299|orf_243-776": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/6967317|orf_5-1399": "MPYGCGEQNMINFAPNIYILDYLTKKKQLTDNLKEKALSFMRQGYQRELLYQREDGSFSAFGNYDPSGSTWLSAFVLRCFLEADPYIDIDQNVLHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPVTLTAYIVTSLLGYRKYQPNIDVQESIHFLESEFSRGISDNYTLALITYALSSVGSPKAKEALNMLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNLKFQIPKMLQCP*", "T1-PacBio/reads/molecule/7019152|orf_257-871": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASKEHLKQHYIDLKDRPFFLGW*", "T1-PacBio/reads/molecule/7026565|orf_9-635": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/7132448|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/7144507|orf_63-1019": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDN*", "T1-PacBio/reads/molecule/7145314|orf_245-778": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/7216973|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/7269789|orf_649-1212": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKNKTGACCHFPHI*", "T1-PacBio/reads/molecule/7302991|orf_119-1360": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKLW*", "T1-PacBio/reads/molecule/7606410|orf_81-2951": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNRDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPREKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQQDCVNTFGSYECQCRSGFVLHDNKHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLRFYSDNSVQRKGFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGYGVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHSDDTITKKVSTCDTPAPSSRTHSTAGSDHCLSRGGDWSLLPLVA*", "T1-PacBio/reads/molecule/7620765|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/7638135|orf_251-784": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGLVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/7732877|orf_234-767": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/7739018|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/7740558|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/7844073|orf_8-2353": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPENSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLRFIQEIEHALGLGPAKQCPLREFLTVYIKNIFLNQVLAEINKEIEGVTKTSDPLKILANADTMKVLGVQRPLLQSTIIVEKTVQDLLNLMHDLSAYSDQFLNMVCVKLQEYKDTCTAAYRGIVQSEEKLVISASWAKDDDISRLLKSLPNWMNMAQPKQLRPKREEEEDFIRAAFGKESEVLIGNLGDKLIPPQDILRDVSDLKALANMHESLEWLASRTKSAFSNLSTSQMLSPAQDSHTNTDLPQCQSRSCRLSVNLPNRSRIWLTAACLSYIWK*", "T1-PacBio/reads/molecule/8037313|orf_18-539": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQRKD*", "T1-PacBio/reads/molecule/8093175|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/812550|orf_775-1416": "MPSPQSLRAPSLVFQGWTYAIDFPATYTKDKKWNSCVRRRKWIRYRRYKSRDIWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGRCGSEEASTLTIPAAPVGLRWLVR*", "T1-PacBio/reads/molecule/8146590|orf_240-773": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/8154416|orf_42-668": "MSETTPAAPTAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/8280934|orf_310-432": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T1-PacBio/reads/molecule/8365822|orf_102-1403": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLIKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFRLGMMSMRNFRYC*", "T1-PacBio/reads/molecule/8453797|orf_79-1173": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T1-PacBio/reads/molecule/8510053|orf_223-756": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGKNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T1-PacBio/reads/molecule/8581101|orf_31-1272": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKLW*", "T1-PacBio/reads/molecule/8684285|orf_243-737": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGRPTLQTPSLGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNW*", "T1-PacBio/reads/molecule/871332|orf_204-1985": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/871958|orf_648-1319": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSLNYSKYWALGN*", "T1-PacBio/reads/molecule/875893|orf_899-1846": "MIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPSLASTTLSSWPHHTPRSQGRSGKSRCTMRCSSTPSGIFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPWCPTQV*", "T1-PacBio/reads/molecule/8763893|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/8763895|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKRLGVRLVRRLVPRCQSSSPRLWPPLKSVAEFSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGKPSPRLKRRAGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/8803526|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/8845255|orf_244-738": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHLRNW*", "T1-PacBio/reads/molecule/8866884|orf_120-2312": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T1-PacBio/reads/molecule/8953142|orf_16-543": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPPAPGGRTE*", "T1-PacBio/reads/molecule/8973334|orf_209-1540": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVPLHCLHGHTIHRGLRDALASPDAL*", "T1-PacBio/reads/molecule/8976671|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/8993491|orf_45-1931": "MGTARIAPGLALLLCCPVPSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPAQLTAIITTLVSPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHYTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVDSACPSAPAYCPLPPPTATLSCLAMPSQGPQPWRPSRPHHLPWLLPRTMGSSTAPAQAWTRRPLGLSGHLPCYRKSGRQSCDQALGAGPADIVDGQMDQKMGG*", "T1-PacBio/reads/molecule/9254182|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKESAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9281724|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9461903|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9482727|orf_14-1795": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/9491565|orf_29-919": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKIRLKRLFAISVLWQCRIGRNIFCFPECCCNLFYFSFNGLSLKLEDGFIIANTPCSERLTFEVCSFIHSTFIMVLFCKDI*", "T1-PacBio/reads/molecule/9496445|orf_302-1708": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFCHNHILFLQWRGTS*", "T1-PacBio/reads/molecule/9535324|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9541363|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9541370|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9541377|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9559770|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9559773|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9665833|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9675201|orf_356-742": "MSFCVRAQTAANRVVIAPKHSVRVWISGLFSARGWKRMSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T1-PacBio/reads/molecule/9676206|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVTASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9716734|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9754436|orf_141-1166": "MWRTCRCCRKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAISHI*", "T1-PacBio/reads/molecule/9755126|orf_233-556": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T1-PacBio/reads/molecule/9761681|orf_42-668": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9853399|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9868923|orf_586-1440": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPSEAASAGPNSLSLSSPLTAASGLNSAAAAIGLERASLQSTKPSAGVM*", "T1-PacBio/reads/molecule/9902043|orf_924-2036": "MHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLPGHAKPGTPALETLETTPPAMAAPKDDGFLNGSCSGLDEEASGPERPPALLQEEWETVM*", "T1-PacBio/reads/molecule/9948047|orf_208-1722": "MGTARIAPGLALLLCCPVLSSAYALVDADDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSASTSGKPRKDKASGKLYPESEEDKEAPTGSRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTNETREREVFDRLGMIYTVGYSVSLASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPATAAAGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWVSVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFINIVRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVFMATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIKKSWSRWILALDFKRKARSGAAAIATAPWCPTQV*", "T1-PacBio/reads/molecule/9975242|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T1-PacBio/reads/molecule/9988818|orf_249-1064": "MNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ILMN/spades/NODE_211_length_985_cov_20.235746_g133_i0|orf_212-745": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ILMN/spades/NODE_234_length_917_cov_295.735782_g151_i1|orf_96-722": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/assembly/3136|orf_28-645": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/assembly/4425|orf_54-539": "MNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPTAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVSSKT*", "T2-ONT/assembly/5092|orf_715-1248": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/assembly/727|orf_253-786": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/assembly-ms1/1551|orf_20-409": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRKKKKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLELVG*", "T2-ONT/assembly-ms1/2520|orf_503-1393": "MARSRLTAPSASRVQAILLPQPSSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLKDPKPENILFRGHCVWWRQFQET*", "T2-ONT/assembly-ms1/289|orf_18-353": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQSWSLALLPRLECSGASLKP*", "T2-ONT/assembly-ms1/3095|orf_28-645": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/assembly-ms1/3097|orf_16-657": "MNTERTKPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/assembly-ms1/4204|orf_47-1057": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSGAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/assembly-ms1/499|orf_540-1073": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/assembly-ms1/5152|orf_835-957": "MNVEKASVAAHTLFSTKEHILGRGLMTVTSVGKVLEEVVT*", "T2-ONT/assembly-ms1/672|orf_253-786": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/assembly-permissive/3119|orf_47-1057": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/assembly-permissive/3120|orf_36-1046": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/assembly-permissive/3123|orf_28-645": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/assembly-permissive/4173|orf_715-1248": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/assembly-permissive/4259|orf_255-578": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T2-ONT/assembly-permissive/4848|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/assembly-permissive/6493|orf_151-588": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGGDQPCRLQAWDHPWRLLHTSWQEHYTWQ*", "T2-ONT/assembly-permissive/683|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/assembly-unspliced/2526|orf_715-1248": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/assembly-unspliced/3098|orf_28-645": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/assembly-unspliced/4215|orf_345-878": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/assembly-unspliced/4371|orf_47-676": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSATKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/assembly-unspliced/682|orf_253-576": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T2-ONT/corrected/00e1a7a7-a849-493f-91f3-916756e6767c_0|orf_11-637": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/0658a79d-f8a6-465b-8758-366524843620_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1615": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/07bfe2b7-a119-4a43-ad88-ee9aa38d3d58_0|orf_147-557": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/08fe5bcd-b9e0-469e-ba6c-3937bbcda46b_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_193-726": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1134-2291": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/09a0f7dc-92b8-49a2-bfaf-588c9ef4825d_0|orf_169-579": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/0a848285-681d-4a27-97d1-9796bb47e682_0|orf_325-849": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQPSKSGHFFRNTSRGCKSSMGQCPQNTWGGYPGRS*", "T2-ONT/corrected/0ad0f4a6-e936-4391-8b6f-ea6db5ced972_0|orf_100-510": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/0b8f37ba-4c40-4afb-ab7b-5b1ce63f9aab_0|orf_64-474": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/0dfc7a1f-57b8-4700-9215-3ed5c675e105_0|orf_121-1068": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLEIQTWQALPCHHQF*", "T2-ONT/corrected/112e150a-feb2-4784-b35f-412ffad02cae_0|orf_161-673": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVRVSFCHPGWSTVARSWLTATSVSWAQVILPP*", "T2-ONT/corrected/12194af4-8eae-4d3c-8fa2-50b48608e494_0|orf_251-1285": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/1634caa5-09e3-4e97-bfa3-e117841b46cb_0|orf_268-1278": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/1ab3adf8-997a-4cde-99cd-443bc6098a00_0|orf_37-1047": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/1b0e3749-fdf8-4809-88fe-178b2b5871d5_0|orf_205-1644": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFRGKKARRHLKMMHIAATLIQRRFRTLMMRRRFLSLKKTAILIQRKYRAHLCTKHHLQFLQVQNAVIKIQSSYRRWMIRKRMREMHRAATFIQSTFRMHRLHMRYQALKQASVVIQQQYQANRAAKLQRQHYLRQRHSAVILQAAFRGMKTRRHLKSMHSSATLIQSRFRSLLVRRRFISLKKATIFVQRKYRATICAKHKLYQFLHLRKAAITIQSSYRRLMVKKKLQEMQRAAVLIQATFRMHRTYITFQTWKHASILIQQHYRTYRAAKLQRENYIRQWHSAVVIQAAYKGMKARQLLREKHKASIVIQGTYRMYRQYCFYQKLQWATKIIQEKYRAKKKKK*", "T2-ONT/corrected/1b81241b-bf7f-409f-8a1b-d65a7bab6c11_0|orf_17-1615": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/1cf75a3f-7ea2-415c-ad4a-4eaeef329361_0|orf_22-900": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKL*", "T2-ONT/corrected/1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFRGKKARRHLKMMHIAATLIQRRFRTLMMRRRFLSQENCYFDSEKISGTSLYKASLTVPSGTKCSY*", "T2-ONT/corrected/1ef93086-8df7-4a04-a29c-1d6b12aae90a_0|orf_17-691": "MGIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1241": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/2019e937-dafa-44a5-8a0f-74b12f012f8d_0|orf_32-2224": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/20fd2883-b9f7-4282-a480-3cd2739220ad_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/25407472-da26-402c-8cf0-80451a3b83ea_0|orf_319-1518": "MCYTEHTLGLKDIRNPTPNIDVQESIHFLESEFSRGISDNYTLALITYALSSVGSPKAKEALNMLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/25c43666-0c33-4145-93b5-601a0c6b7fb7_0|orf_54-464": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/278b380e-3753-4219-a35a-9cae497b3c7f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684": "MQVLCPCLASQVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWAHSGRDRPWSGKESTGAIPKVGTPAPPPTYPVLGRRVGSLAPQLSRLMGATGGFLGARSEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGR*", "T2-ONT/corrected/2c53a304-61bc-454e-9b0c-dd9f819dffe5_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/2dac5728-f127-4d05-9c3a-11d628857868_0|orf_306-1340": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/2efc9e9b-96cc-495e-8dcc-d911cc9d8343_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/301ec41a-67f8-435f-b167-5fa4e1ad1c72_0|orf_109-519": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1461": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMATMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/328fdf8c-216b-4f84-84d7-1becceed54e1_0|orf_36-2228": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/34660733-b584-435c-b611-9ddc7849c850_1|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGAFGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/347e5b78-865c-44c7-950f-d47f3b25303b_0|orf_48-893": "MRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/379c3b22-7ff6-4dd5-9110-7c0a22511929_0|orf_253-669": "MMWEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/3ad4c0a3-2671-4ecc-ab97-889b5d68e06c_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/3b7cf8a1-03e0-41e1-b4ab-6d7d33d59cc4_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/3b9adb7d-f283-4ef6-8c04-930200f8655c_0|orf_31-273": "MASAVIYFTRGPPYPKSCMPWGSLMGFTQYMALTTSKCVPWSGVGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T2-ONT/corrected/3c09be9b-a2b8-4747-b58d-b45bd7f2800a_0|orf_146-556": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/3de037c0-0452-414d-affa-011587517a1a_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_128-1138": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/3ff9f63e-a2f6-4d75-9e3d-ffcf8183c6e8_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/415d45cf-6017-4d77-a1e0-f8a1d50c200f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/41c5a9ac-7960-45fc-bad8-d06cab26045f_0|orf_80-484": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHRLVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/435277ac-a08a-4087-a972-33412f349a53_0|orf_230-763": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGEANPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_60-2252": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/473959ff-802c-485d-91ab-f76a1d66fe9a_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-853": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/48f97ace-343d-4208-9704-0a2149edb570_0|orf_232-1266": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/4c67fcac-f1a2-4e7e-b224-b10e03aa46f4_0|orf_81-230": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVSSKT*", "T2-ONT/corrected/4cd604e9-b6dc-45d0-af6e-1731bdcc1242_0|orf_292-1896": "MKRAPLKIIIYIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGISVHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/4d93d68f-5da0-4b29-a8a0-f2615352956f_0|orf_128-538": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/4ec5f01d-eafe-44de-8a55-5d3a4e429357_0|orf_204-1238": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITPARAGPRSTPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T2-ONT/corrected/4f3f86fe-abab-4a3b-8f9b-88228ef71576_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/528d46bb-3248-4304-a439-772ea54360f3_0|orf_749-871": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T2-ONT/corrected/53da64e5-242b-4770-94f7-71f042165aff_0|orf_113-523": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/551d1949-201c-42af-90f5-8498941c9be7_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANRERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/55b4c0e1-d55a-4a83-8377-3fc2cf90c79b_0|orf_69-1079": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/5aa51d21-8143-4731-a18e-307093536b34_0|orf_63-113": "MASASMPPSVLTLTQV*", "T2-ONT/corrected/5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/5d2b4724-eba3-45cc-bd3c-b61053dd5aff_0|orf_47-673": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442": "MMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/5dc8c7a0-72f1-4653-a3b5-687de5a668a9_0|orf_125-625": "MPRASPGGRSPQVPTSPVPGDPFDQEDETPDPKFAVVFPRIHRAGRASSSRSSEEASADAPTGEGRGWPRAGVGGHSEGCRTSGEGVSGLRRGSLLAPTAPDGPSLDESGSSSEAELETLNDEPRCAGRRAQAPTRVLGLAPPCCYPDSPWRPACSRRETRASVGP*", "T2-ONT/corrected/5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_19-1617": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/5edb3def-938c-4b35-97fe-0b34c9d3fb53_0|orf_28-645": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/5faa1e14-700f-4a61-af59-37fbbed7a53d_0|orf_260-1159": "MWRTCRCCRSTCASWCRCCWRTAARRRPRWRRRWRRRAPWSRCASSFRTRRSTRCWWSAPRSKRTSVMKEKKKKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILNMASASMPPSVLTLTQV*", "T2-ONT/corrected/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/625a9ca9-6607-42c2-9ba9-2b053f5cd3e5_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_19-777": "MWKGKTLRRQLQRQHKCAIIIQSYYRMHVQQKKWKIMKKAALLIQKYYRAYSIGREQNHLYLKTKAAVVTLQPAYRGMKVRKRIKDCNKAAVTIQSKYRAYKTKKKYATYRASAIIIQRWYRGIKITNHQHKEYLNLKKTAIKIQSVYRGIRVRRHIQHMHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTY*", "T2-ONT/corrected/68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794": "MTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/6a47a8ae-71e3-4bd7-90c2-8b6cb8fca016_0|orf_8-2197": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/6a73d850-1113-4f09-84b2-9647a744a5dc_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/6cf3f2c7-6f03-4077-ab28-567c388c7969_0|orf_38-478": "MQVLCPCLASQVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWAHSGRDRPWSGKESTGAIPKVGSPAPPPTYPVLGRRVRVTRSPAVQADGGHWGFLGGPVGSSWSIVEPPGSENGVMHISVGVSVVWAVTKDWKVRWG*", "T2-ONT/corrected/6e3f2a58-07bf-47fc-95d6-e57d174825d5_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/6f476c62-5903-4a00-8bce-bf2611594c88_0|orf_204-737": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/6f886145-44df-4b62-b250-8946cb0ef2e5_0|orf_278-400": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T2-ONT/corrected/70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-670": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_545-1078": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/730fe512-f7c4-4949-9ca6-45553f6a7944_0|orf_124-534": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/73c4d1b3-4757-4c43-8e84-c0c7fd975f3a_0|orf_185-235": "MASASMPPSVLTLTQV*", "T2-ONT/corrected/770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-982": "MAAAAGQDGGGGGGADEDDDGEDGDEGEEEEEACPEPSPLCPVPAGGGFYLVPTFSLPPAPGRLERLGRVMVELEALLPPPGAVPGGAGVWVPGGRPPVLRGLVRVLNRSFEKAVHVRASHDGWASFCDHPARYVPRSPPWAGAGGTGAGDPILDPGLGLGPGQASASSPDDGGRTDRFAFQLPFAEGAGDGARLDFVVRYETPEGTFWANNHGRNYTVLLRIAPAPTPTDAERLPQQQQLPQLEPQPECQGPVEAEARQLKSCMKPVRRRPAEEELKTKNMDDNTFAMAEHPDVQESVGPLVAHPSPSMAPDDTSGKWVLAALE*", "T2-ONT/corrected/786ecba7-1163-40c1-9142-8e717527fc28_0|orf_22-696": "MGIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/7b85ffa1-c810-45b5-9650-b280e73fa75e_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/7cfd9cc4-6588-4903-ab50-8e25bf8f2ea0_0|orf_85-2274": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVNTIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/8584c6aa-d7ef-4420-b58b-af693d382cae_0|orf_544-1956": "MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKQEISEDVQFGTTSERPAENAEENPESEEGFESGDRSERQWGDLTAEEWVSYPLQPVTDLLVHKEVHTGIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSCHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECEKSFSRSSALIKHKRVHTD*", "T2-ONT/corrected/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_5-1642": "MPEGGGTSRRLLPMQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-783": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFRGKKARRHLKMMHIAATLIQRRFRTLMMRRRFLSQENCYFDSEKISGTSLYKASLTVPSGTKCSY*", "T2-ONT/corrected/8653b867-3394-42bc-a8fd-96b7da7bd1ca_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/89f0f4b3-1b2d-44ac-9246-1b70996b114a_0|orf_837-959": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T2-ONT/corrected/8b275a85-ef61-4cf3-8782-32a079ae1933_0|orf_51-1061": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/8c3bb791-0a7b-4c9e-ab6e-1cece14e5544_0|orf_210-2402": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWQIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/8dbb9d91-1e6d-4f25-bf04-8f143664e8d7_0|orf_8-1042": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/8e237050-3e00-455e-b64a-abebfbd02bda_0|orf_64-1512": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDWASHSTWHLLHPSVCPGQVWGSWLRHLWTGNHRGHGDI*", "T2-ONT/corrected/8f440213-3e7a-40d0-aa54-47b12941a722_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/909e0ee0-0dab-40f0-801b-4253ce22cbca_0|orf_1-618": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/947c6cc6-7a2c-4a40-8142-01a8fc686c9a_0|orf_29-439": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_212-1651": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487": "MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKQEISEDVQFGTTSERPAENAEENPESEEGFESGDRSERQWGDLTAEEWVSYPLQPVTDLLVHKEVHTGIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSCHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQNLKPEASVSACLKSF*", "T2-ONT/corrected/97986621-8b51-4e89-8ad0-a016c11698b0_0|orf_647-769": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T2-ONT/corrected/99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788": "MVLLLLLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_108-1739": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKGAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/9ae25983-2454-4d7b-a688-df2c544d7f5e_0|orf_150-1160": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_40-1479": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/9b955873-1b39-4396-9346-e9f4d71d1e02_0|orf_57-467": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_204-737": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/9ffcdb49-3aec-4816-a90d-9da82d82c112_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_56-2248": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/a284d2c8-997b-4db5-bb9b-7750aa918e6c_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAVGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/a3014ab1-2fc4-49dc-971b-aaff607eb2fc_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291": "MVLDLLFVKLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1750": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/aaa4e19c-8359-4ef0-b65e-342bd8bf3235_0|orf_30-776": "MNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/ad0300a7-20a8-4d81-9c7d-2300127d58ef_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-790": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/b0884250-7f95-40e9-bfd6-fde0ff6a6806_0|orf_33-779": "MNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-625": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_17-1615": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-1200": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_205-738": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/bad4d685-5e8c-4bc2-a995-44e2edd38aa8_0|orf_147-557": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_100-1548": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGLGTLWTGNHRGHGDI*", "T2-ONT/corrected/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_91-1722": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1479": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWERKAISTSVPMASAVIYFTRGPPYPKSCMPWGSLMGFTQYMALTTSKCVPWSGVGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T2-ONT/corrected/bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_43-2235": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/bf52980e-e6de-4bc9-8b9d-9c142423e540_0|orf_74-484": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_191-1201": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583": "MFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFRGKKARRHLKMMHIAATLIQRRFRTLMMRRRFLSQENCYFDSEKISGTSLYKASLTVPSGTKCSY*", "T2-ONT/corrected/c21537b1-9480-40ad-b7e7-31b8024c5119_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/c2650bc4-7477-4aa0-951a-2130cb92fbcd_0|orf_154-564": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/c26a52cb-be64-4f94-b766-4123cf3546f2_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/c73ee1f9-aac9-4e34-aa99-a674f2adacf0_0|orf_102-152": "MASASMPPSVLTLTQV*", "T2-ONT/corrected/c7d15036-4f25-42ea-adda-d5ba4189b18d_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/ca5f972d-de5f-49b2-bb94-19e6e5a6b00e_0|orf_7-600": "MRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNHLLLRRASLWFSQWQSIISANGFGFVISEVKYYMMKAYGFSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYEKKKKKSLVVLVWYQRIATIS*", "T2-ONT/corrected/cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-718": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/ceb41408-0f12-4929-8914-0c76724a5fe1_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773": "MASMRSPGLDPQFSSVVVHKNHEDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_11-1648": "MPEGGGTSRRLLPMQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/d06de40c-5cbf-4842-9744-88490a657603_0|orf_58-300": "MASAVIYFTRGPPYPKSCMPWGSLMGFTQYMALTTSKCVPWSGVGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T2-ONT/corrected/d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-732": "MNTERTKPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_211-651": "MMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-659": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAAGEIHALRAGSCHGLGGAECGEDGPSHARGDQPCRLQAWDHPWRLLHTSWQEHYTWQ*", "T2-ONT/corrected/d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/d6fa3932-decb-41c2-9b9e-c1dff5878895_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_254-691": "MVLLSLLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSQAWDHPWRLLHTSWQEHYTWQ*", "T2-ONT/corrected/dc8eb000-4a0e-48bf-a3c6-a9cc4a7e54d7_0|orf_362-772": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/dd0b47f8-937f-45cc-a1b1-cc4da226f8ea_0|orf_1-909": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISLQYIQRMQKLYGTVSTKHLGRLPRKKLTYSWIAFIHISIDISKFIYQPQD*", "T2-ONT/corrected/ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_2-1378": "MNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/de9f9123-ff2a-4cd6-a809-b6ddbb48e37e_0|orf_46-672": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPSFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/e23b92a1-5e1a-4f6a-882b-2284ec9bb3e3_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T2-ONT/corrected/e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_758-4375": "MNSKHLNGTITAKYTYGKPVKGDVTLTFLPLSFWGKKKNITKTFKINGSANFSFNDEEMKNVMDSSNGLSEYLDLSSPGPVEILTTVTESVTGISRNVSTNVFFKQHDYIIEFFDYTTVLKPSLNFTATVKVTRADGNQLTLEERRNNVVITVTQRNYTEYWSGSNSGNQKMEAVQKINYTVPQSGTFKIEFPILEDSSELQLKAYFLGSKSSMAVHSLFKSPSKTYIQLKTRDENIKVGSPFELVVSGNKRLKELSYMVVSRGQLVAVGKQNSTMFSLTPENSWTPKACVIVYYIEDDGEIISDVLKIPVQLVFKNKIKLYWSKVKAEPSEKVSLRISVTQPDSIVGIVAVDKSVNLMNASNDITMENVVHELELYNTGYYLGMFMNSFAVFQECGLWVLTDANLTKDYIDGVYDNAEYAERFMEENEGHIVDIHDFSLGSSPHVRKHFPETWIWLDTNMGYRIYQEFEVTVPDSITSWVATGFVISEDLGLGLTTTPVELQAFQPFFIFLNLPYSVIRGEEFALEITIFNYLKDATEVKVIIEKSDKFDILMTSNEINATGHQQTLLVPSEDGATVLFPIRPTHLGEIPITVTALSPTASDAVTQMILVKAEGIEKSYSQSILLDLTDNRLQSTLKTLSFSFPPNTVTGSERVQITAIGDVLGPSINGLASLIRMPYGCGEQNMINFAPNIYILDYLTKKKQLTDNLKEKALSFMRQGYQRELLYQREDGSFSAFGNYDPSGSTWLSAFVLRCFLEADPYIDIDQNVLHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPVTLTAYIVTSLLGYRKYQPNIDVQESIHFLESEFSRGISDNYTLALITYALSSVGSPKAKEALNMLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/e4ecf576-3295-4875-9179-29f14c43aaf5_0|orf_224-1258": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/corrected/e539e289-e5a5-4d32-bfe0-76b9208410eb_0|orf_226-759": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/e556685c-989d-4d73-867a-690aab68e19d_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/e5e8f01b-3a29-441b-86f2-80ab74e1617a_0|orf_2-1387": "MHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/ea626a9f-1d9b-4d80-816c-62de8c451b16_0|orf_106-1737": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/corrected/eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDIVKRKREENLKMVWRINPAHRKLQARLDQMRKFRRQHEQLRAVIVRVLRPQVTAVAQQNQGEVPEPQDMKVAEVLFDAADANAIEEVNLAYENVKEVDGLDVSKEGTEAWEAAMKRYDERIDRVETRITARLRDQLGTAKNANEMFRIFSRFNALFVRPHIRGAIREYQTQLIQRVKDDIESLHDKFKVQYPQSQACKMSHVRDLPPVSGSIIWAKQIDRQLTAYMKRVEDVLGKGWENHVEGQKLKQDETASA*", "T2-ONT/corrected/ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_205-738": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/ec98a2d8-5e76-4d09-8183-cdbcb7130fb3_0|orf_8-580": "MFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFRGKKARRHLKMMHIAATLIQRRFRTLMMRRRFLSQENCYFDSEKISGTSLYKASLTVPSGTKCSY*", "T2-ONT/corrected/ee340ba0-088d-49e8-b790-fc1423e29b47_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/eed4e4df-213d-4c9f-855d-3f555068da8a_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/f1276bdf-f624-4d8b-a9b3-54746b52bae7_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/corrected/f2a7a88b-1745-466f-807d-0ded1a965898_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRAPCVWWRQFQET*", "T2-ONT/corrected/f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_69-2261": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/corrected/f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_46-792": "MNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/fb7475dc-637f-4ba5-ad59-682d012cdea2_0|orf_30-440": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/fbc5d884-01b8-4519-a712-2774b2228229_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/fc43cef0-1fd7-4d18-950e-bb368d5d7aeb_0|orf_143-553": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/fc973578-fb89-458e-91a5-c812a90561a5_0|orf_135-545": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/corrected/fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-850": "MVELEALLPPPGAVPGGAGVWVPGGRPPVLRGLVRVLNRSFEKAVHVRASHDGWASFCDHPARYVPRSPPWAGAGGTGAGDPILDPGLGLGPGQASASSPDDGGRTDRFAFQLPFAEGAGDGARLDFVVRYETPEGTFWANNHGRNYTVLLRIAPAPTPTDAERLPQQQQLPQLEPQPECQGPVEAEARQLKSCMKPVRRR*", "T2-ONT/corrected/fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/corrected/fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGRPTLQTPSLGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNW*", "T2-ONT/corrected/fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/isonform/25_0_1|orf_758-4375": "MNSKHLNGTITAKYTYGKPVKGDVTLTFLPLSFWGKKKNITKTFKINGSANFSFNDEEMKNVMDSSNGLSEYLDLSSPGPVEILTTVTESVTGISRNVSTNVFFKQHDYIIEFFDYTTVLKPSLNFTATVKVTRADGNQLTLEERRNNVVITVTQRNYTEYWSGSNSGNQKMEAVQKINYTVPQSGTFKIEFPILEDSSELQLKAYFLGSKSSMAVHSLFKSPSKTYIQLKTRDENIKVGSPFELVVSGNKRLKELSYMVVSRGQLVAVGKQNSTMFSLTPENSWTPKACVIVYYIEDDGEIISDVLKIPVQLVFKNKIKLYWSKVKAEPSEKVSLRISVTQPDSIVGIVAVDKSVNLMNASNDITMENVVHELELYNTGYYLGMFMNSFAVFQECGLWVLTDANLTKDYIDGVYDNAEYAERFMEENEGHIVDIHDFSLGSSPHVRKHFPETWIWLDTNMGYRIYQEFEVTVPDSITSWVATGFVISEDLGLGLTTTPVELQAFQPFFIFLNLPYSVIRGEEFALEITIFNYLKDATEVKVIIEKSDKFDILMTSNEINATGHQQTLLVPSEDGATVLFPIRPTHLGEIPITVTALSPTASDAVTQMILVKAEGIEKSYSQSILLDLTDNRLQSTLKTLSFSFPPNTVTGSERVQITAIGDVLGPSINGLASLIRMPYGCGEQNMINFAPNIYILDYLTKKKQLTDNLKEKALSFMRQGYQRELLYQREDGSFSAFGNYDPSGSTWLSAFVLRCFLEADPYIDIDQNVLHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPVTLTAYIVTSLLGYRKYQPNIDVQESIHFLESEFSRGISDNYTLALITYALSSVGSPKAKEALNMLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/isonform/3_0_222|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/isonform/3_0_7|orf_521-1195": "MGIGALPLVPEFLILNMSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/isonform/4_0_5|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/0078d354-5a2a-4381-b14f-67050e012b42_0|orf_26-400": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELGNCGLKELSISMS*", "T2-ONT/reads/01daf63f-a66f-442a-94a0-fe0ae435057f_0|orf_187-477": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNK*", "T2-ONT/reads/024bdfba-dcb8-4ee2-b10d-87a5fd91177a_0|orf_54-1175": "MAVKVQTTKRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGFRPAYLAPDCRVCLQIHSGLSCWSCGSHCSVSYRSGEDPNAKPAWLWLCCWGANVQKQL*", "T2-ONT/reads/02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRNTETQNILFRGHCVCEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVICFEVFQRSGMMSMRNFRYC*", "T2-ONT/reads/050f7df8-8101-467d-9c30-efa8c65e3b59_0|orf_566-1114": "MENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQRVCEPIMLTINMKDK*", "T2-ONT/reads/054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1612": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/reads/07bfe2b7-a119-4a43-ad88-ee9aa38d3d58_0|orf_147-557": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/07dc69c0-1724-4d6a-86a2-d32de80bb97e_0|orf_278-859": "MHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTEKLRESSAPD*", "T2-ONT/reads/08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKSRPGMFGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/085d9ee5-b0e2-4d3e-a3fc-cff6edb54996_0|orf_26-610": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTESTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLHELHSKKMNLHLVLIDE*", "T2-ONT/reads/0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_192-725": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1118-2503": "MATLLDMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTAPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T2-ONT/reads/09a0f7dc-92b8-49a2-bfaf-588c9ef4825d_0|orf_169-603": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVRAAVLVRMELQAPIITLQSFLFSVSSFCTLWNFGCDLFLKDSV*", "T2-ONT/reads/09dfba99-52f5-415f-be55-449f6c2eb99e_0|orf_77-625": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEETAPGGQDHRRA*", "T2-ONT/reads/0ad0f4a6-e936-4391-8b6f-ea6db5ced972_0|orf_100-510": "MSGMALLEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIGIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFHTFEKDPKHKISYSEGTAFGGGNFRRLEFSITQSIGH*", "T2-ONT/reads/0c68b5bc-4889-4a1f-b632-2025367912bd_0|orf_2-1096": "MMAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGGLQVLSLTPGSRGGGRCCLEGPFWHFLWEDSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDVSISLLSLRILSFHNNTSLLFINKCVILHIIFPERDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDVAVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCAPWF*", "T2-ONT/reads/0dfc7a1f-57b8-4700-9215-3ed5c675e105_0|orf_121-1068": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLEIQTWQALPCHHQF*", "T2-ONT/reads/0ebbb725-1f58-42e7-a553-d0931d0105d2_0|orf_88-645": "MSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T2-ONT/reads/101abcc5-0432-435f-b0ab-29393d2d7f3d_0|orf_66-1160": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPQKGQHPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHPVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T2-ONT/reads/10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442": "MQINPCLLSSGSLHSGEDSPYETLHSFISNAVAPFFESYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMWSRA*", "T2-ONT/reads/118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFNLG*", "T2-ONT/reads/1273e865-89ea-480f-8889-121deaba2880_0|orf_79-1521": "MGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWEDSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDVSISLLSLRILSFHNNTSLLFINKCVILHIIFPERDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDVAVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCAPWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTITLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEF*", "T2-ONT/reads/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKRDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRRLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/reads/14a13079-f8eb-4c2f-97b6-453b45a1f2b7_0|orf_244-801": "MSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T2-ONT/reads/14b4beff-67bf-4914-9f74-741cb0920eac_0|orf_54-296": "MQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKETYNFKGITN*", "T2-ONT/reads/15cea865-5478-4e03-8b38-0dae6d397d6d_0|orf_73-642": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAQERALLLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQRRLLREAKITEELNLRSLET*", "T2-ONT/reads/1634caa5-09e3-4e97-bfa3-e117841b46cb_0|orf_869-1279": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/169f1971-81be-4233-a9ff-81384c21bfa4_0|orf_123-1073": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEIEFLAKLGTCVIPHPGETGEPGSSPDSGYLETWQALPCHHQF*", "T2-ONT/reads/1ab3adf8-997a-4cde-99cd-443bc6098a00_0|orf_632-1042": "MSGMALMEVNLFSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/1c547dd9-c7d0-4b68-b56d-cd6d0618f421_0|orf_759-2060": "MLKSQRRFPQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMRNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQPKAAVAATQ*", "T2-ONT/reads/1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRFGGGNFKRLEFSITQSIGH*", "T2-ONT/reads/1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-666": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKAQKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTTATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFREKKARRHLKMMHIAATLIQRRFRTLMMRRRFLSQENCYFDSEKISGTSLYKASLTVPSGTKCSY*", "T2-ONT/reads/1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFRLGMMSMRNFRYC*", "T2-ONT/reads/1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1202": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLAKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLGFTRNW*", "T2-ONT/reads/22ae54d7-c818-45e6-909e-182904090fd8_0|orf_104-1120": "MSSTRRLMGVSQRNPEMMSIKGTSQTPEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T2-ONT/reads/25407472-da26-402c-8cf0-80451a3b83ea_0|orf_507-1517": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIEKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVYALKFFRLGMMSMRNFRYC*", "T2-ONT/reads/25c43666-0c33-4145-93b5-601a0c6b7fb7_0|orf_54-464": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/26bec3aa-9710-481b-9617-70c325f54dc1_0|orf_64-555": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGSEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGHSA*", "T2-ONT/reads/278b380e-3753-4219-a35a-9cae497b3c7f_0|orf_44-646": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATAKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKP*", "T2-ONT/reads/27bb3f84-759a-40df-b59d-bbad5231a713_0|orf_30-299": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRIK*", "T2-ONT/reads/27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFPHQAQRLHHQPGLAQGVPPQQELHWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/reads/293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKEAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPEEGQGSKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684": "MQVLCPCLASQVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWAHSGRDRPWSGKESTGAIPKVGTPAPPPTYPVLGRRVGSLAPQLSRLMGATGGFLGARSEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGR*", "T2-ONT/reads/2ac15c58-ca71-48b1-a4ac-4ed3040cd9da_0|orf_138-542": "MGYPCGFQVHSRTQYALNACSDFLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T2-ONT/reads/2cd6d958-b8ac-4b12-85ab-7e1dc561c623_0|orf_120-677": "MSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T2-ONT/reads/2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319": "MQWLLFLSPTLESLARQTGMVIKWLLQLKRRLQNSKWDSFTCSKILKFRRSACRIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRELEFSITQSIGH*", "T2-ONT/reads/2d7cd727-8486-4fb8-8893-82c94dc4eedc_0|orf_26-1384": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVLAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFLPRRNLKGQKILFSSSNRPPMPSV*", "T2-ONT/reads/2dac5728-f127-4d05-9c3a-11d628857868_0|orf_305-1339": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/reads/2e07b2d9-8c90-46a2-83c0-739565ff88f7_0|orf_173-1225": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEKIIHSYNINIDIHYGVKSNSLAFIERTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSRVNRWIREIQKVAKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGERFHATISFDTDTGLKQALETVNDYNPLMRDFPLTICCLPRSWAK*", "T2-ONT/reads/2ec22c5d-0b3d-44f1-be6b-adb1988c4f9d_0|orf_23-1522": "MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMARPPGAAAHTAGGSGEPDGCGQPPSAFFDAWQPGRGSLLPGGPLLALSMGGFSNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDVSISLLSLRILSFHNNTSLLFINKCVILHIIFPERDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDVAVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCAPWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTITLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLNQQSF*", "T2-ONT/reads/2ed03af0-cf3b-4a1f-9bff-fb7de976065a_0|orf_174-1088": "MMSIKGTSQEHQEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKSFVRLTRIIAHGLPPTASALGPGPTPAS*", "T2-ONT/reads/2f0905d3-6132-46df-bfce-d9ba6a9d03e3_0|orf_61-942": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDSDIDEGDELSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATSEEWFPKGGPQKSLFVRSVQ*", "T2-ONT/reads/2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/301ec41a-67f8-435f-b167-5fa4e1ad1c72_0|orf_109-519": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520": "MQINPCLLSSGSLHSVKTRPTKLCILSLAMQWLLFKSDIRESGKADRDGDKMAPSVEKEDCRTQMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFRYPRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMGQHALKFFRLGMMSMRNFRYC*", "T2-ONT/reads/302843fb-30db-4851-be27-c37383915c5e_0|orf_237-452": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTL*", "T2-ONT/reads/3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1338": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQGLILSPRLECSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMATMWTACKMDHYVATTEFLWSVPCSPQVWTFLSQYIQRMQKLYGTVSTKHLGRLPRKKLTYSWIAFIHISIDISKFIYQPQD*", "T2-ONT/reads/32433099-17dd-4898-a962-a5ff06dd7eaf_0|orf_750-1382": "MVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHIVRFDNL*", "T2-ONT/reads/33bf20fd-0e03-4f89-8698-422c9d7da1cc_0|orf_91-582": "MKDINKMWRGSMNGSNMGFLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENCENLQPQIGRKIS*", "T2-ONT/reads/356c75c8-3f58-447e-9fe0-e6ce1541bb2d_0|orf_97-756": "MDPGDPAGDPAAGERHRMGRDPLLLLQALQTLWSTRERKQLREEAWRGFAALDDPLAGLLDMLESCRGQRGDGPSLAAWISHQLQCWLQAQPCPSLAQHSLRLKQLQARAVKVLTESPPSLAAPLASIFQLQDADRSCLLAHVHRLHHEGRFREAATLGTTLKLQSELGVEKMSIPLLLQDKVALVERYVAGFPDLQRRLLVLMDSWCQPGFDIKDVAR*", "T2-ONT/reads/36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531": "MEQAWWQSWRRVPAPVRENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEASLDSTGV*", "T2-ONT/reads/37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/reads/3b9adb7d-f283-4ef6-8c04-930200f8655c_0|orf_31-273": "MASAVIYFTRGPPYPKSCMPWGSLMGFTQYMALTTSKCVPWSGVGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T2-ONT/reads/3c09be9b-a2b8-4747-b58d-b45bd7f2800a_0|orf_146-556": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/3dd69f20-f2fb-45ec-a814-f62ccb6d5d36_0|orf_78-1172": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T2-ONT/reads/3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_127-1137": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYESRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/41baaa12-cb7b-487b-b104-91ab6777f559_0|orf_120-692": "MSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKACIGAVWHPHETSKVITCGWDGLIKLWINEINP*", "T2-ONT/reads/41c5a9ac-7960-45fc-bad8-d06cab26045f_0|orf_80-484": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHRLVIFIFCFKLLYFMELWL*", "T2-ONT/reads/43435cb5-8d84-4dba-aa39-468a3b5b94f4_0|orf_100-912": "MDFENLFSKPPNPALGKTATDSDERIDDEIDTEVEETQEEKTEYLQKMVQRNEGYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEASRKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKVEAEIP*", "T2-ONT/reads/435277ac-a08a-4087-a972-33412f349a53_0|orf_229-762": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGEANPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/43db199b-ff5b-450e-97d0-f069c84954ff_0|orf_2-1588": "MRESCIKLQAFVRGYLVRKQMRLQRKAVISLQSYFRMRKARQYYLKMYKAIIVIQNYYHAYKAQVNQRKNFLQVKKAATCLQAAYRGYKVRQLIKQQSIAALKIQSAFRGYNKRVKYQSVLQSIIKIQRWYRAYKTLHDTRTHFLKTKAAVISLQSAYRGWKVRKQIRREHQAALKIQSAFRMAKAQKQFRLFKTAALVIQQNFRAWTAGRKQCMEYIELRHAVLVLQSMWKGKTLRRQLQRQHKCAIIIQSYYRMHVQQKKWKIMKKAALLIQKYYRAYSIGREQNHLYLKTKAAVVTLQSAYRGMKVRKRIKDCNKAAVTIQSKYRAYKTKKKYATYRASAIIIQRWYRGIKITNHQHKEYLNLKKTAIKIQSVYRGIRVRRHIQHMHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFREKES*", "T2-ONT/reads/44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_1079-2497": "MAALAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKFNGSITSPGWPKDTPPTRTASGSWWLPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGFESPPTPHLHSAIPAHLPLAGQNWCSLLPTVPVRGPGTLPRALPPPILMVSVTFPVVK*", "T2-ONT/reads/47429369-ed4f-4200-beb3-f3ff95ca6e1d_0|orf_69-815": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGSPAKEEITLHFP*", "T2-ONT/reads/4838ed22-0fdf-4b19-a853-a4d51020e723_0|orf_31-300": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRIK*", "T2-ONT/reads/48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDYRNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-814": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIYMAVILWRVQRRRSACGFTLRNW*", "T2-ONT/reads/4c67fcac-f1a2-4e7e-b224-b10e03aa46f4_0|orf_81-230": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVSSKT*", "T2-ONT/reads/4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSIEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEFFRLGMMSMRNFRYC*", "T2-ONT/reads/4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-748": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETDPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPRNW*", "T2-ONT/reads/4ec5f01d-eafe-44de-8a55-5d3a4e429357_0|orf_204-1238": "MDSYSAPESTPSASSRPKDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/reads/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGCRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHQHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDIIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITPARAGPRSTPPTRTASGSWWPPPSTASPCSLTSLRQRAMMCASTTSWRCAVDSQLTPSCMASSVVLRSPRSSPPSTTTCAWSSSPTTPCPKRASRPTSSQKRGQLCSPLGDAPTSSNSECRKETGPPSEACQASRTPCYSGTSPWTEWDGGSGAHQPPTSTLPFRPTSLWPDRTGALFSPLCPSADRGPFPVPYPLPF*", "T2-ONT/reads/50388116-bd4e-41f8-9210-4d36800d28e4_0|orf_183-1133": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKTGEPGSSPDSGYLETWQALPCHHQF*", "T2-ONT/reads/505f75f7-019d-4729-b1f0-26115ae8d9c7_0|orf_17-1687": "MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWEDSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDVSISLLSLRILSFHNNTSLLFINKCVILHIIFPERDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDVAVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCAPWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTITLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENRQLDTVNFFLKSKENLF*", "T2-ONT/reads/508b0700-95a4-414d-a553-aeee3bfcd85e_0|orf_352-675": "MRISSCSDESSNSNSSRKSDNHSPAVVTTTVSSKKQPSVLVTFPKEERKSVSGKASIKLSETISEGTSNSLSTCTKSGPSPLSSPNGKLTVASPKCGHRGKKDGKKL*", "T2-ONT/reads/51aeb913-ec99-4fb6-b724-2bac072c9773_0|orf_6-620": "MLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWEDSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDVSISLLSLRILSFHNNTSLLFINKCVILHIIFPERDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWICILGGRSVD*", "T2-ONT/reads/521489dd-1cd9-4cca-b395-d3f845c085bc_0|orf_30-299": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRIK*", "T2-ONT/reads/528d46bb-3248-4304-a439-772ea54360f3_0|orf_748-870": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T2-ONT/reads/53da64e5-242b-4770-94f7-71f042165aff_0|orf_113-523": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/5423a35e-9ed1-41ba-aecd-3083f741d8a0_0|orf_165-1115": "MSEPGGGGGEDGSAGLEVSAVQNVADEVVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPGSSPDSGYLETWQALPCHHQF*", "T2-ONT/reads/549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_249-746": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDRRTVHSLPAWVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEDPARGFTLRNW*", "T2-ONT/reads/554e660d-d516-4fbe-9f67-cd81c0b3065f_0|orf_48-1175": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGSLCFSLSFVLRLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T2-ONT/reads/55e138fb-874d-42bc-8e8f-4a921b51fc36_0|orf_27-635": "MAAEEGVASAASAGGSRGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWEDSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDVSISLLSLRILSFHNNTSLLFINKCVILHIIFPERDAAIRVLNCLPHFPCLHRQWT*", "T2-ONT/reads/5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTQFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPEEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/reads/5885e529-e427-4cc0-b9f9-44d543d5c25f_0|orf_197-394": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLFRQVLEE*", "T2-ONT/reads/5aa51d21-8143-4731-a18e-307093536b34_0|orf_63-113": "MASASMPPSVLTLTQV*", "T2-ONT/reads/5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442": "MMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/reads/5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_805-1620": "MNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLLQRPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/reads/5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738": "MVLLSLLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/5efea778-3812-464b-a9e1-c8076e89417d_0|orf_26-1462": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREAEGSSIVGVENCKGVLMTT*", "T2-ONT/reads/60677a00-2a65-4fe9-b6db-c2a53adfbbf7_0|orf_66-866": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERARLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGPTPIPRSLLTYLHHF*", "T2-ONT/reads/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHIVGFWHEHTRPDRDRHVFIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/reads/621482a9-cb80-40fe-b00c-0e77e6034351_0|orf_124-1074": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEVALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKTGEPGSSPDSGYLETWQALPCHHQF*", "T2-ONT/reads/62931211-fb66-4112-8624-a4a4daa671b1_0|orf_102-461": "MHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T2-ONT/reads/662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_252-779": "MKVRKRIKDCNKAVVTIQSKYRAYKTKKKYATYRASAIIIQRWYRGIKITNHQHKEYLNLKKTAIKIQSVYRGIRVRRHIQHMHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTY*", "T2-ONT/reads/68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794": "MTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/reads/68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKQPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675": "MPKTAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/6cf3f2c7-6f03-4077-ab28-567c388c7969_0|orf_38-328": "MQVLCPCLASQVWYREDVSHSNPRRVLLVPAGHPRGGGSDQLWAPRPPVGTLWEGQALVREGINRSNPKGGQPGSPTHIPCTGEKGEGHSLPSCPG*", "T2-ONT/reads/6e5d1604-7e34-48cb-ae9b-a80a93f8aafb_0|orf_40-837": "MQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFRGKKARRHLKMMHIAATLIQRRFRTLMMRRRFLSLKKTAILIQRKYRAHLCTKHHLQFLQVQNAVIKIQSSYRRWMIRKRMREMHRAATFIQSTFRMHRLHMRYQALKQASVVIQQQYQANRAAKLQRQHYLRQRHSAVILQAAFRGMKTRRHLKSMHSSATLIRVGLDHYW*", "T2-ONT/reads/6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/6f886145-44df-4b62-b250-8946cb0ef2e5_0|orf_278-400": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T2-ONT/reads/706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISGDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFNLG*", "T2-ONT/reads/70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-682": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYCEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSFSHFYFLFQASVLYGTLAVIYF*", "T2-ONT/reads/72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-667": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVEAKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_547-984": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCRTDWQEHYTWQ*", "T2-ONT/reads/730fe512-f7c4-4949-9ca6-45553f6a7944_0|orf_124-342": "MSGMALMEVNLLSGFMVPSEAISLSETVKKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDLQCP*", "T2-ONT/reads/74c23e54-2e9c-439e-acf0-2719efcbcc8a_0|orf_121-1071": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKTGEPGSSPDSGYLETWQALPCHHQF*", "T2-ONT/reads/76034dbd-aa03-4bb6-adcd-38d1f6940dad_0|orf_237-464": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLKEKM*", "T2-ONT/reads/770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-793": "MAAAAGQDGGGGGGADEDDDGEDGDEGEGGGRGGLPRALTAVPRPRWRGVLPGPHIFAAARAGPSGALGARHGGAGGAAAASRSGPRGCRGVGAWGPPAGAARVGTRAEPLLREGGARAGLTRRLGFLLRPPSALRPAQPAVGRSGRNRSRRSILDPGLGLGPGQASASSPDDGGRTDRFAFQLPFAEGAGDGARLDFVVRYETPEGTFWANNHGRNYTQSCSGSHPLPHPLMPKGCPSSSSCRSWSHSPSARVPWRLRPGS*", "T2-ONT/reads/77e604dd-0869-46b3-b4ad-a4c6b39fe2d5_0|orf_77-946": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFRGMVPPRAAPKSPCS*", "T2-ONT/reads/7b335514-1380-4257-b451-f61559e03856_0|orf_255-665": "MMWKNNSRIQLVEEPGEQGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/7ded8e54-a148-4363-8209-a0bd39ad5fc0_0|orf_516-1004": "MFQKQHWLQVKSHGLCLQLKYLKIPKFCSLKLQLMMFSQALQHQMSLRYQIPTQQQVIVFWILSHLKLLELLNSQWQHWLQVKHHLFLKNWKSLPVQKCSLRHLLPSKLHLSLLHLNDAPGPNRQEPNLKEPQVPEQLHLKFLKALNLHGQHRLPVKHNLFL*", "T2-ONT/reads/7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_256-789": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/7faee4e8-16a5-43e3-af2c-8223ce4a674e_0|orf_103-1437": "MATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQSSGPFVEGSIVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQVGNLCQFLPQDKVREFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARVKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDPRRIQDEKALCEGEIIDKRREGNSREGEKECGRSYCTF*", "T2-ONT/reads/810d1157-6a91-4bee-8eac-9f3fde65a6ac_0|orf_82-1281": "MSLAGGRAPRKTAGNRLSGLLEAEEEEEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPSVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLLALGPEPCARKLSLNEEMSSPQKLLSCPDWGSCCSVSSPCFSPLSSLIFA*", "T2-ONT/reads/833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670": "MPETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/8346c39a-c383-4656-81ee-ae77add7737d_0|orf_492-1793": "MRHWEKHTCVTFLERTDEDSYIVFTYRPCGVCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTDNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRPL*", "T2-ONT/reads/84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_266-1642": "MNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/reads/8595a150-66e4-4987-8cee-08d72830c075_0|orf_114-872": "MENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQRVCEPIMLTVRDNKKLRVNAVIAPKSSYADKAPSRSLNELKQYGFFSYFRELFDAPDPVMSYLCCQYHIHEVPVGTEKTKKELNG*", "T2-ONT/reads/860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-546": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKENNKNSTAKILGNERKKHTISKV*", "T2-ONT/reads/87347b2d-3d84-4698-b101-0cf0924b834b_0|orf_28-564": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLVTFD*", "T2-ONT/reads/87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/89f0f4b3-1b2d-44ac-9246-1b70996b114a_0|orf_838-960": "MNVEKASVAAHTLFSIKEHILGRGLMTVTSVGKVLEEVVT*", "T2-ONT/reads/8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335": "MAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQSQSIGH*", "T2-ONT/reads/8e237050-3e00-455e-b64a-abebfbd02bda_0|orf_64-1512": "MAHAHIQGGRRAKSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGQKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDWASHSTWHLLHPSVCPGQVWGSWLRHLWTGNHRGHGDI*", "T2-ONT/reads/8f0bb718-96d8-40fa-a5d5-6eea5b98eb27_0|orf_175-459": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNSQKIQTANIL*", "T2-ONT/reads/8f5357ad-8db3-421a-a0e4-fd292a199365_0|orf_29-919": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRAYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKIRLKRLFAISVLWQCRIGRNIFCFPECCCNLFYFSFNGLSLKLEDGFIIANTPCSERLTFEVCSFIHSTFIMVLFCKDI*", "T2-ONT/reads/908bb333-b044-4664-b234-3b3ca9a51574_0|orf_37-1479": "MEKERKQEKEKELERQKEKEKELQKMKEQEKECELEKEREKLEEKIEPREPNLEPMVEKQEVEQSCNKEEEPVFTRQDSNRSEKEATPVVHETEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQGVLPQTVPSQPSSSTVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMMSGRPAMDIPPIHPGMIPPKPLMRRDQMEGSPNSSESFEHIARSARDHAISLSEPRMLWGSDPYPHAEPQQATTPKATEEPEDVRSEAALDQEQITAAYSVEHNQLEAHPKADFIRESSEAQVQKFLSRSVEDVRPHHTDANNQSACFEAPDQKTLSTPQEERISAVESRPFPRKRSVSHGSNHTQKPDEQRSEPSAGIPKVTSRCIDSKEPIERPEEKPKKEGFIRSSEGPKPEKVYKSKSETRWGPRPSSNRMEEVNDRPVRRSGPIKKPVLRDMKEEREQRKE*", "T2-ONT/reads/919e88cd-c380-48e7-a56e-677a29a4af59_0|orf_30-299": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRIK*", "T2-ONT/reads/91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRPLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/reads/91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537": "MSEPGGGGGEDGSAGLEVSAVRNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMEHALKFFRLGMMSMRNFRYC*", "T2-ONT/reads/92d51600-6ae5-4734-a471-3c1742a0ba03_0|orf_35-487": "MDSYSAPESTPSASSRPEQSNLRCHSSAETIRIGQEAEFIYPDSTSKGKFPSVRSCRKMLTLKRLHSFCIKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPGSISCPDCVKISIAI*", "T2-ONT/reads/92d89611-3919-4561-90a0-0dadf02dc08d_0|orf_10-537": "MKVRKRIKDCNKAAVTIQSKYRAYKTKKKYATYRASAIIIQRWYRGIKITNHQHKEYLNLKKTAIKIQSVYRGIRVRRHIQHMHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLKDADCSNTHSVKLQKIQTANIL*", "T2-ONT/reads/93b63ca0-bbe7-4919-9a28-bbd5cc37877b_0|orf_141-803": "MSFLNETTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGNSGHVHTDE*", "T2-ONT/reads/947c6cc6-7a2c-4a40-8142-01a8fc686c9a_0|orf_29-439": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/95ac2ab1-a232-4dd0-8a63-9336bc7df626_0|orf_46-1140": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRPSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T2-ONT/reads/9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_477-1652": "MATLLHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/reads/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487": "MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKQEISEDVQFGTTSERPAENAEENPESEEGFESGDRSERQWGDLTAEEWVSYPLQPVTDLLVHKEVHTGIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSCHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQNLKPEASVSACLKSF*", "T2-ONT/reads/97c9d845-dbb8-41f3-95b2-ad14e232556e_0|orf_24-299": "MAAEAAGGKYRSTVSKSKDPGATIISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIK*", "T2-ONT/reads/995b3b39-0c62-4078-b2ee-02429eb52d19_0|orf_66-602": "MKVRKRIKDCNKAAVTIQSKYRAYKTKKKYATYRASAIIIQRWYRGIKITNHQHKEYLNLKKTAIKIQSVYRGIRVRRHIQHMHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLERCRLQQHSFSQTTEDTDSKHTLIS*", "T2-ONT/reads/99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788": "MVLLLLLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVIAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-664": "MSEMAAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGKRSPRLKVGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKARVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_587-1738": "MAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKGAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/reads/9ae25983-2454-4d7b-a688-df2c544d7f5e_0|orf_748-1158": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGALGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_95-1480": "MHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/reads/9b955873-1b39-4396-9346-e9f4d71d1e02_0|orf_57-467": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/9b9d1576-655e-4db3-ba56-c72bd41fa852_0|orf_65-1069": "MYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T2-ONT/reads/9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLSKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_202-639": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSRAWDHPWRLLHTSWQEHYTWQ*", "T2-ONT/reads/9dd0c223-c397-4448-addd-f0d305c2c1d6_0|orf_54-935": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQFDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATLRNGSPKGGPQKSLFVRSVQ*", "T2-ONT/reads/9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE*", "T2-ONT/reads/9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-959": "MVLLSLLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQETGSMNDRRADHIAFHIHFPSFPWAEDQAVGNLVIYRNFIIIWREALGAVSSPCTVLPSPTI*", "T2-ONT/reads/a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_808-2244": "MEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWHISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSAELRAASSGASTPWAATSAAVTPGTSWPRDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQSVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/reads/a23bf35e-97d4-4537-8cd0-aa658cf149b1_0|orf_1476-2156": "MESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKKLEHSWKALVHDGDTVSVHRPGFYAERFQRFMCNTVFKKIPLKPSPSKKFRTWLIFLSASSSSGNSCITYQPSVSGEHKAQVTTKAEVEPGVHLGRPDVLPQTPPLEEISEGSPIPDPSFSPLVGETLQMLTTSTTLESLKLQSQSSPIKRKASEDLEQDSAISVIPRCQPLPQQC*", "T2-ONT/reads/a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426": "MQINPCLLSSGSLHSVKTRPTKLCILSLAMQWLLFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEMRNFRYC*", "T2-ONT/reads/a4151748-83db-40a8-ac4f-7601ea9d0aca_0|orf_69-1163": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T2-ONT/reads/a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFENLCSML*", "T2-ONT/reads/a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTHALGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEDDSEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/reads/a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-667": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKK*", "T2-ONT/reads/a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705": "MVLLSLLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291": "MVLDLLFVKLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531": "MSEPRGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDIVKRKREENLKMVWRINPAHRKLRPALTR*", "T2-ONT/reads/a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1993": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPPARPARPPGPLVTQEPHLGRNGMGLRCPPTPHLHSADPGPPPSAGQNWCSLLPTVPVRGPGTLPRALPPPILMVSVTFPVVK*", "T2-ONT/reads/a9e6ced1-68de-43c1-bff9-28180c6f6369_0|orf_141-1157": "MSSTRRLMGVSQRNPEMMSIKGTSQTQRTKWTLTLTLMKGMNHPVMGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T2-ONT/reads/aaa4e19c-8359-4ef0-b65e-342bd8bf3235_0|orf_366-776": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388": "MITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQT*", "T2-ONT/reads/acc68b52-f7c5-405d-afa0-54c826658b7a_0|orf_12-473": "MAAEEGVASAASAGGSWGTAGPWGRLLPICGASPRRGDGAARLPGAAAHTAGGSGEPDGCGQPPSAFFEHLAAGAGVAAPGASGTFYGRILVTAAHQLKSPNCSLGENYLNCFLSEFNLKDGRCDATILYSCSREALQKFIDDRDVSVFPYCL*", "T2-ONT/reads/ad4c183b-5199-4bdd-91d7-3c4dc3095e9f_1|orf_182-445": "MFKMHQSRISYHTMRKEAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRDGLLERCRLQQHSFSQTTEDTDSKHTLIS*", "T2-ONT/reads/ae8f443f-f91b-4e88-9c21-17a29eaa02b8_0|orf_77-1165": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRAFTENCH*", "T2-ONT/reads/af499934-3f90-438e-b381-ea7ba34bd35b_0|orf_141-1133": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQAFGNCE*", "T2-ONT/reads/afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-751": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGRPTLQTPSLGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNW*", "T2-ONT/reads/b0884250-7f95-40e9-bfd6-fde0ff6a6806_0|orf_368-778": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVKSYNSEVSLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/b10d82e2-21a8-448a-92f3-af1b108b62af_0|orf_82-1656": "MGRVLPMLLVPVPPAEAMGQLGSRAQLRTQPEGSGEPDGCGRLFQVLSLTPGSRGGGRCCLEGPFWHFLWEDSRNGGTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDVSISLLSLRILSFHNNTSLLFINKCVILHIIFPERDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDVAVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCAPWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTITLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFDSRRVFKQTHDPWKCQHCGHSLSSQWLGKVLNSHTCTREGRDKKIVSWTQ*", "T2-ONT/reads/b2a9c6c9-3011-4a08-98c8-70abe37fae0d_0|orf_248-427": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVGRQSSFILTPPRRKIPQCSQLQEDV*", "T2-ONT/reads/b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-529": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGGIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRKHYTWQ*", "T2-ONT/reads/b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_800-1483": "MNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGEMDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYRGPPYPKSCMPWGSLMGFTQYMALTTSKCVPWSGVGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T2-ONT/reads/b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAILHFEKDPRHKISYSEGTAFGGGNFKRLEFSITQSIGH*", "T2-ONT/reads/b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-667": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASESPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLSLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKAKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-750": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSNLNCHLRIEKVKCCGLAGSAVYLETVFWRLFQKISPVCPYSLQMEQSLTQQ*", "T2-ONT/reads/b6a6f102-4ef6-463a-8658-b50e1cbeab5b_0|orf_129-1475": "MATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQSSGPFVEGSIVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLRRRKRVWTIILYVLTIL*", "T2-ONT/reads/b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-664": "MSETAPAAPAAAPPGGEGPCKEEGGQKGWGTQGVWSPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_204-698": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGRPTLQTPSLGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNW*", "T2-ONT/reads/b84797a5-6a31-4727-b354-e179e6810a68_0|orf_184-420": "MFYRGIRVRRHIQHMHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASLEE*", "T2-ONT/reads/bad4d685-5e8c-4bc2-a995-44e2edd38aa8_0|orf_147-557": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/bae190a8-5619-4082-9070-ae11b7be9563_0|orf_38-916": "MGRVLPMLLVPVPAEAMGQLGRPRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWEDSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDVSISLLSLRILSFHNNTSLLFINKCVILHIIFPERDAAIRVLNCFTLPLPAQAVDMIIDTQLSRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDVAVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLLFKDLRA*", "T2-ONT/reads/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_107-1549": "MRIFRAEGALRADLWSALCLEPEVSLLFFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGLGTLWTGNHRGHGDI*", "T2-ONT/reads/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_487-1725": "MPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/reads/bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1608": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPPPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNSGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWERKAISTSVPMASAVIYFTERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWVDFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/reads/bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_438-1253": "MGSSPLSLGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSLVAICGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIIPELHDPGPVPQPPVLVRLCGGPRWLLEEGAPPRPLLRVQTP*", "T2-ONT/reads/bf52980e-e6de-4bc9-8b9d-9c142423e540_0|orf_74-484": "MSGMALMEVNLLSGFMVPSGAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_226-1203": "MQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYSHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSLDSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583": "MFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFRGKKARRHLKMMHIAATLIQRRFRTLMMRRRFLSQENCYFDSEKISGTSLYKASLTVPSGTKCSY*", "T2-ONT/reads/c1736fa2-1a31-4bef-8df2-8615fcc32fb1_0|orf_84-632": "MSLLESFSVIFPVACRMTRYTWPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRYDRNQEAFDLDVAVKENKDDLNHVDLNVCRSFSGPGMSAAGMALMEVNLLSGFMVPSEAISLSETVRKWNMIMEKLNLYLDSVNETQFCVNIPAVKKL*", "T2-ONT/reads/c2650bc4-7477-4aa0-951a-2130cb92fbcd_0|orf_154-564": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300": "MGLLHLQQNIEIPEMSLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKMQTQNILFRGHCVWWRQFQET*", "T2-ONT/reads/c2e6a336-ae94-47b8-b236-c870bd302db9_0|orf_28-303": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSQQTSR*", "T2-ONT/reads/c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311": "MQINPCLAQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRWWRQFQET*", "T2-ONT/reads/c55a5ea0-5f71-4430-adf1-4ac135443982_0|orf_279-608": "MLEELQGPAGRRPLPGGLDLPPAAVLATGTAMPEPGPAQPEAEAAAGPSGQSPALRAPQPCGTTGQHLPAAGCRQELPAGTRPPPPPRGQVQRSSHAGHDVEAAVGAWR*", "T2-ONT/reads/c73ee1f9-aac9-4e34-aa99-a674f2adacf0_0|orf_103-153": "MASASMPPSVLTLTQV*", "T2-ONT/reads/c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682": "MFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGGSISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNASGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQPVVLH*", "T2-ONT/reads/c92b5252-d9f9-4c99-9531-b7ac20ca87f0_0|orf_300-812": "MDSYSAPESTPSASSRPEDYFIGATHLQKRLEWVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDRKHFLSRVSFCHPGWSTVARSWLTATSVSWAQVILPP*", "T2-ONT/reads/c99f1365-d34c-475d-9af5-1ea342ca9a11_0|orf_1380-1904": "MDYSLLMSIHNIDHAQREPLSSETQYSVDTRRPAPQKALYSTAMESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKKLEHSWKALVHDGDTVSVHRPGFYAERFQRFMCNTVFKKIPLKPSPSKKFRSGSSFSRRAAPVATPALLTSHRSLGNTRHK*", "T2-ONT/reads/c9c3ebce-5d69-4a7e-b428-0baae680ebfc_0|orf_39-1130": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGTVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPPSLAPENCH*", "T2-ONT/reads/ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/ca5f972d-de5f-49b2-bb94-19e6e5a6b00e_0|orf_7-438": "MRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVRVWIDTHNHLLLRRASLWFSQWQSIISANGFGFVISEVKYYMMKAYGFSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFRARV*", "T2-ONT/reads/cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-715": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEGTGRLHELCSELDL*", "T2-ONT/reads/cb4d1fc4-63b3-4752-bdf8-f8891957cba5_0|orf_285-425": "MRKEAIVIQVRCRAYYQGNQREKYLTILKAVKVLQASFRRVRVRRN*", "T2-ONT/reads/ccc8ee4a-1ebb-448d-af49-ad7673e6d32c_0|orf_469-696": "MIRPSRCQHSSHSSNPIQPYRRYRFHPRLSMIYCSTPNSLDPQQIALLNANPSLTPLLGLLLATAGKSAQLGLHP*", "T2-ONT/reads/cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773": "MASMRSPGLDPQFSSVVVHKNHEDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDISCFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKGHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGQEITEATGIFEFHLWGNFSTSYIFPLFLTSGMTLEVPDQLGWENDHYFLRKSRLSSGLVTAALYGRLYERD*", "T2-ONT/reads/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_54-1520": "MQSRFVVCIMSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKEPCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFAGRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVRCGGLGFDTCGRKSQRPRGYLSFTCGATSVLPISFLCF*", "T2-ONT/reads/d06de40c-5cbf-4842-9744-88490a657603_0|orf_52-294": "MASAVISFTRGPPYPKSCMPWGSLMGFTQYMALTTSKCVPWSGVGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T2-ONT/reads/d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-741": "MNTERTKPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLDVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASAPSSLFSHFYFLFQASVLYGTLAVIYF*", "T2-ONT/reads/d0ae4d9d-e4a2-4cbf-858a-cd65ebea0b04_0|orf_50-715": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKSAPS*", "T2-ONT/reads/d2bb7c79-6a56-4b0f-8443-6d2222800287_0|orf_148-1515": "MEKERKQEKEKELERQKEKEKELQKMKEQEKECELEKEREKLEEKIEPREPNLEPMVEKQESENSCNKEEEPVFTRQDSNRSEKEATPVVHETEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQGVLPQTVPSQPSSSTVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMMSGRPAMDIPPIHPGMIPPKPLMRRDQMEGSPNSSESFEHIARSARDHAISLSEPRMLWGSDPYPHAEPQQATTPKATEEPEDVRSEAALDQEQITAAYSVEHNQLEAHPKADFIRESSEAQVQKFLSRSVEDVRPHHTDANNQSACFEAPDQKTLSTPQEERISAVESQPSRKRSVSHGSNHTQKPDEQRSEPSAGIPKVTSRCIDSKEPIERPEEKPKKEGFIRSSEGPKPEKYINLNQKLVGAHDQALTEWKKLMIDL*", "T2-ONT/reads/d2d1917a-7e52-4c0e-90a6-98299a5e3d94_0|orf_26-298": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRRTK*", "T2-ONT/reads/d2ec8a54-3616-4b79-a718-7e8b87f0a02a_0|orf_98-631": "MDPGDPAGDPAAGERHRMGRDPLLLLQALQTLWSTRERKQLGRKPGGGLLPWTTLAGLLDMLESCRGQRGDGPSLAAWISHQLQCWLQAQPCPSLAQHSLRLKQLQARAVKVLTESPPSLAAPLASIFQLQDADRSCLLAHVHRLHHEGRFREAATLGTTLKLQSELGVEKVNVFLM*", "T2-ONT/reads/d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_208-519": "MMYDNFTLVPVWGNRKAISTSVPMASAVIYFTRGPPYPKSCMPWGSLMGFTQYMALTTSKCVPWSGVGVLASTPVDRKSQRPRGYLSFTCGATSVLPISFLCF*", "T2-ONT/reads/d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-461": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQSFRRSSQGTLR*", "T2-ONT/reads/d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_254-787": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGGSYVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/d5db12fd-db4d-45ea-9fd2-8327c059a638_0|orf_68-1162": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T2-ONT/reads/d5eae861-fad9-481c-b143-0be5976dc79c_0|orf_234-518": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKCLTILKAVKVLQASFRRVRVERTLRKMQTASNTHSVKLQKIQTANIL*", "T2-ONT/reads/d62ec7c6-b015-448a-a72f-778bab715924_0|orf_25-207": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDGKMKRVALKKPTRNVTVTWMN*", "T2-ONT/reads/d79182b3-02d4-4b3d-9400-e9f0828b670c_0|orf_10-1302": "MKEQEKECELEKGREKLEEKIEPREPNLEPMVEKQESENSCNKEEEPVFTRQDSNRSEKEATPVVHETEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQGVLPQTVPSQPSSSTVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMMSGRPAMDIPPIHPGMIPPKPLMRRDQMEGSPNSSESFEHIARSARDHAISLSEPRMLWGSDPYPHAEPQQATTPKATEEPEDVRSEAALDQEQITAAYSVEHNQLEAHPKADFIRESSEAQVQKFLSRSVEDVRPHHTDANNQSACFEAPDQKTLSTPQEERISAVESQPSRKRSVSHGSNHTQKPDEQRSEPSAGIPKVTSRCIDSKEPIERPEEKPKRKALYDLLKDQNLKKYINLNQKLVGAHDQALTEWKKLMIDL*", "T2-ONT/reads/d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_251-688": "MVLLSLLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSQAWDHPWRLLHTSWQEHYTWQ*", "T2-ONT/reads/dae6a102-47c7-4866-9483-0a5b17802734_0|orf_237-572": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAM*", "T2-ONT/reads/db110020-9c89-45cb-aa67-f1833daf65a9_0|orf_452-1498": "MVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVADLNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVYG*", "T2-ONT/reads/dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMEHALKFFRLGMMSMRNFRYC*", "T2-ONT/reads/dc8eb000-4a0e-48bf-a3c6-a9cc4a7e54d7_0|orf_359-679": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRP*", "T2-ONT/reads/dd1dbd1f-6498-498b-9df6-aa46a76eaf1c_0|orf_82-714": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEREPPPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKGSAPGP*", "T2-ONT/reads/ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_564-1196": "MNRLPLLAAIEIQKAFAVAFGINVLAANVHHPVLGMTGSGIHTPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKDAQEVHCDEATKWNVNAPPTFHSEMMYDNFTLVPVWGKEGYLHVCSNGLCCYLLYERPTYPKSCMPWGSLMGFTQYMALTTSKCVPWSGVGGSWLRHLWTGNHRGHGDI*", "T2-ONT/reads/de456efb-25e9-457f-88b0-be99553d802f_0|orf_277-930": "MPRPELPLPEGWEEARDFDGKVYYIDHTNRTTSWIDPRDRYTKPLTFADCISDELPLGWEEAYDPQVGDYFIDHNTKTTQIEDPRVQWRREQEHMLKDYLVVAQEALSAQKEIYQVKQQRLELAQQEYQQLHAVWEHKLGSQVSLVSGSSSSSKYDPEILKAEIATAKSRVNKLKREMGHLQHELQFKERGFQTLKKIDKKMSDAQGSYKLDEAQAV*", "T2-ONT/reads/dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666": "MAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPSFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMLPDFLL*", "T2-ONT/reads/e3a99d73-0425-4051-b31a-5aa4e16adcbf_0|orf_129-1082": "MSEPGGGGGEDGSAGLEVSAVQNVAADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEQTGEPGSSPDSGYLETWQALPCHHQF*", "T2-ONT/reads/e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_2433-4211": "MPQATSRPFWFPVRMGATVLFPIRPTHLGEIPITVTALSPTASDAVTQMILVKAEGIEKSYSQSILLDLTDNRLQSTLKTLSFSFPPNTVTGSERVQITAIGDVLGPSINGLASLIRMPYGCGEQNMINFAPNIYILDYLTKRKQLTDNLKEKALSFMRQGYQRELLYQREDGSFSAFGNYDPSGSTWLSAFVLRCFLEADPYIDIDQNVLHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPVTLTAYIVTSLLGYRKYQPNIDVQESIHFLESEFSRGISDNYTLALITYALSSVGSPKAKEALNMLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPGDRR*", "T2-ONT/reads/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDWEPLNYKDPCKAAAFLGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSGNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T2-ONT/reads/e5ffc7e0-4dbf-403f-afb5-1c4a611e1f8b_0|orf_96-1298": "MVEKQESENSCNKEEEPVFTEQDSNRSEKEATPVVHETEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQGVLPQTVPSQPSSSTVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMMSGRPAMDIPPIHPGMIPPKPLMRRDQMEGSPNSSESFEHIARSARDHAISLSEPRMLWGSDPYPHAEPQQATTPKATEEPEDVRSEAALDQEQITAAYSVEHNQLEAHPKADFIRESSEAQVQKFLSRSVEDVRPHHTDANNQSACFEAPDQKTLSTPQEERISAVESQPSRKRSVSHGSNHTQKPDEQRSEPSAGIPKVTSRCIDSKEPIERPEEKPKGKALYDLLKDQNLKKYINLNQKLVGAHDQALTEWKKLMIDL*", "T2-ONT/reads/e706a71c-ca3f-4aa8-aa7e-234783efd12c_0|orf_24-545": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLDRCMASKHYLSATDMLVSAVESLEGPRSRWKD*", "T2-ONT/reads/e86af422-6e0a-4100-b9a2-3d2d0bc63a3c_0|orf_48-917": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPEPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVR*", "T2-ONT/reads/ea0a085c-50e4-428d-8648-0de8c915512b_0|orf_22-738": "MPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKILRAIW*", "T2-ONT/reads/ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_207-740": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/ee244e5c-a59c-4fdc-aaf7-5b22f6b98c1c_0|orf_157-1401": "MVEKQESENSCNKEEEPVFTRQDSNRSEKEATPVVHETEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQGVLPQTVPSQPSSSTVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMMSGRPAMDIPPIHPGMIPPKPLMRRDQMEGSPNSSESFEHIARSARDHAISLSEPRMLWGSDPYPHAEPQQATTPKATEEPEDVRSEAALDQEQITAAYSVEHNQLEAHPKADFIRESSEAQVQKFLSRSVEDVRPHHTDANNQSACFEAPDQKTLSTPQEERISAVESQPSRKRSVSHGSNHTQKPDEQRSEPSAGIPKVTSRCIDSKEPIERPEEKPKKEGFIRSSEGPKPEKVYKSKSETRWGPRPSSNRMEEVNDRPVEDQVPLKNLYLEI*", "T2-ONT/reads/f13cd92f-4f40-4d1d-a6ea-6608b949583e_0|orf_27-209": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDREMKRVALKKPTRNVTVTWMN*", "T2-ONT/reads/f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T2-ONT/reads/f27bee82-0344-4c46-9370-4bf3c6f460bb_0|orf_3-896": "MCGLDTQRASVQSDCFLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD*", "T2-ONT/reads/f3568b2a-8bf2-4357-9832-cd0a6e29645e_0|orf_33-308": "MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSQQTSR*", "T2-ONT/reads/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVRSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPRVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRAPCVWWRQFQET*", "T2-ONT/reads/f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_70-1470": "MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFGDIALDEEDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRRAATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPACGETLQDSTGNFSSPEYPNGYSAHMHRVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSNLHLADPGV*", "T2-ONT/reads/f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_171-785": "MAVNISANGFGFAICQLNVVYNVKASGSRRLRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332": "MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKSALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYTRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKISYSEGTAFGGGNFKRLEFSITQSIGH*", "T2-ONT/reads/f8e3c3bc-826d-431d-9fb2-1b7db9d1fe94_0|orf_174-647": "MHRAATFIKAMFKMHQSRISYHTMRKAAIVIQVRCRAYYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQSNYRRYRQQTYFNKLKKITKTVQQRYWAMKERNIQFQRYNKLRHSVIYIQAIFRGNKLTRHLDDAYSRNSHSEEI*", "T2-ONT/reads/fb7475dc-637f-4ba5-ad59-682d012cdea2_0|orf_30-440": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/fc973578-fb89-458e-91a5-c812a90561a5_0|orf_135-545": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T2-ONT/reads/fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/fde52952-31f2-49f8-b31b-c4b0158240b7_0|orf_42-809": "MAAAAAGPTRTTMARMVMKGEEEEEACPEPSPLCPVPAGGGFYLVPTFSLPPAPGRLERLGRVMVELEALLPPPGAVPGGAGVWGAWGPPAGAARVGTRAEPLLREGGARGGPASHDGWASFCDHPARYVPRSPPWAGAGGTGAGDPILDPGSAGFRPRTPPPRPTTAAAPTALPSSCPLLRARAMGRASTSWCAMRPLRALSGPTTTAATTQSCSGSHPLPHPLMPKGCPSSSSCRSWSHSPSARVPWRLRPGS*", "T2-ONT/reads/fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-817": "MVELEALLPPPGAVPGGAGVWVPGGRPPVLRGLVRVLNRSFEKAVHVRASHDGWASFCDHPARYVRAARRGQEREEQEQEIPSWIRGSAWVPARHPPPRPTTAAAPTALPSSCPLLRARAMGRASTSWCAMRPLRALSGPTTTAATTQSCSGSHPLPHPLMPKGCPSSSSCRSWSHSPSARVPWRLRPGS*", "T2-ONT/reads/fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSPAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGRPTLQTPSLGPSVETSAYKLAGTLYMAVILWRVQRRRSACGFTLRNW*", "T2-ONT/reads/fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T2-ONT/reads/ff1c2148-527a-48f6-b185-b7b6b722bd27_0|orf_56-316": "MAAEAAGGRYKHSQQKQEPLGPLISVIRTCLLLTMSKTGENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSK*", "T3-ONT/corrected/0514f1c3-ace9-4429-893e-4e5f75daf02a_0|orf_45-431": "MSFCVRAQTAANRVVIAPKHSVRVWISGLFSARGWKRMSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T3-ONT/corrected/4ce91f6f-2885-4627-895c-e1fea082464d_0|orf_28-303": "MSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T3-ONT/corrected/625f80b6-2db6-4e17-9293-072fbfa9d3ab_0|orf_1014-1400": "MSFCVRAQTAANRVVIAPKHSVRVWISGLFSARGWKRMSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T3-ONT/corrected/886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_247-780": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T3-ONT/corrected/b8f300e8-3627-43aa-a1cc-f2be3f582772_0|orf_218-604": "MSFCVRAQTAANRVVIAPKHSVRVWISGLFSARGWKRMSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T3-ONT/corrected/ff190fe3-e205-4361-a075-f13117d7b60a_0|orf_754-1140": "MSFCVRAQTAANRVVIAPKHSVRVWISGLFSARGWKRMSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T3-ONT/reads/00b808e9-f4ad-4f46-b416-a8d1409ec5a5_0|orf_493-1782": "MAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKQEISEDVQFGTTSERPAENAEENPESEEGFESGDRSERQWGDLTAEEWVSYPLQPVTDLLVHKEVHTGIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSCHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRSGKWSKKIN*", "T3-ONT/reads/0514f1c3-ace9-4429-893e-4e5f75daf02a_0|orf_44-430": "MSFCVRAQTAANRVVIAPKHSVRVWISGLFSARGWKRMSKKIPATTIVLEWSRAEAGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T3-ONT/reads/173af448-383b-440a-b182-4f2dec5c4544_0|orf_314-847": "MVLLSLLGIVFQGEGPPISSCDTRTMADCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T3-ONT/reads/17dcd23f-1e2a-45a5-85e2-e7a0ca76a5ac_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYGVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T3-ONT/reads/21c748c5-2473-407c-a915-453a18e73257_0|orf_75-1232": "MHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ*", "T3-ONT/reads/3db28a75-776f-4c04-8326-3d5552cdad1a_0|orf_445-666": "MIRPSRCQHSSHSSNPIQPYRRYRFHPRLSMIYPTLQLMGPTIALLNANPSLTPLLGLLLATAGKSAQLGLHP*", "T3-ONT/reads/4028efaf-b681-4fec-b4be-261db0562201_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T3-ONT/reads/5476238d-8936-4f7c-b883-afe7dc67ca92_0|orf_44-670": "MSETAPAAPVAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T3-ONT/reads/652ce177-2e76-4a31-b257-c849df35e0eb_0|orf_144-1007": "MDPGDPAGDPAAGERHRMGRDPLLLLQALQTLWSTRERETAPGGSLAGVCCLGRPPGRASGHAGELPGPAGRRPLPGGLDLPPAAVLATGTAMPRAWPSLRLKQLQARAVKVLTESPPSLAAPLASIFQLQDADRSCLLAHVPPPPPRGQVQRSEWPTWPGSWGDGFSGGGARTRLAQGRLCVGAVWGFWSTWRYQGPGRGQPSAVCGVGFQEPSGCLSQQRCQGTAWSQAWVSPCRPCVSQHALGPHSHRVLGGPGPELWSSHAPPCLLASAPPEPSQNQPVGCPL*", "T3-ONT/reads/805ff3a9-0de9-4bed-b83f-69bc1bc780c9_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKTASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T3-ONT/reads/835b7632-c72d-4b33-ba49-aeb54f7f116a_0|orf_610-1641": "METSGRCTEGPLPECMQENYGNVVSLDFEIRSENEVNPKQEISEDVQFGTTSERPAENAEENPESEEGFESGDRSERQWGDLTAEEWVSYPLQPVTDLLVHKEVHTGIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSCHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFCQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKS*", "T3-ONT/reads/886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_242-775": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE*", "T3-ONT/reads/9529b7df-3b95-402a-bb7f-e79eda4de2b2_0|orf_16-642": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T3-ONT/reads/9d73538e-aa8f-425a-9c4b-f1d03decd394_0|orf_50-676": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T3-ONT/reads/afab8e45-7196-4057-b372-e2a40cd62e1f_0|orf_55-750": "MSLAGGRAPRKTAGNRLSGLLEAEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVITKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPRAHNHLSFSDSATCWGARPQGRER*", "T3-ONT/reads/b099a8db-a8a3-4321-a4c3-275f37df801b_0|orf_44-670": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T3-ONT/reads/b8f300e8-3627-43aa-a1cc-f2be3f582772_0|orf_218-604": "MSFCVRAQTAANRVVIAPKHSVRVWISGLFSARGWKRMSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*", "T3-ONT/reads/bea964e1-5530-44f2-b72e-0b140fd16f9c_0|orf_96-506": "MSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL*", "T3-ONT/reads/c947cba7-308e-4779-97a0-b34a375b357c_0|orf_78-1172": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRREVTKAYKEPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFPRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK*", "T3-ONT/reads/ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320": "MSVEEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHFEKDPKHKYPIQRALRFGGGNFKRLEFSITQSIGH*", "T3-ONT/reads/cc5e0574-eba9-4134-8fa1-6f3f4e042382_0|orf_512-754": "MIRPSRCQHSSHSSNPIQPYRRYRFHPRLSMIYPTLQLMRPTNNSPSNANPSLTPRRCPPPSNSRQISPIRSPPLTPPQP*", "T3-ONT/reads/d81cc75f-12ce-4528-bb1e-d0a288abffed_0|orf_43-741": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLSKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPRRNRRTPTSKTQKALFRATTDLNKRAG*", "T3-ONT/reads/e272f1f5-1e2b-4142-abf7-5c1b057a2380_0|orf_48-1247": "MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGGSQKAREERALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDASFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSELQPCARKLSLNEEMSSPQKLLSCPDWGSCCSVSSPCFSPLSSLIFA*", "T3-ONT/reads/ed20e7e9-f81b-47f6-9227-a88481cfdadb_0|orf_49-675": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T3-ONT/reads/f29f5411-d9a6-4cf5-9e4b-2a10c907cf19_0|orf_48-674": "MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "T3-ONT/reads/f44f3516-46c0-4466-96b7-4aa83d5f5fa7_0|orf_15-485": "MTPRSCPTPQRPLCRGLGDHGGACGPPVSVGCVSAGQGVVQRGRQPLQPRRVLLVPASTPPGRWFRSAVGPTTSCGHAGQALVREGINRSNPKGSSWSIVEPPGSENGVMHISVGVSVVWAGAVKSSSTHTLVPKCSNCKYHLIGCNISKNRKRIS*", "T3-ONT/reads/f4f1fe82-2734-437e-8372-e1f5bdec2b9f_0|orf_69-989": "MLTWRAEQEGGMQFWVSSESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAALMNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPMAVNISANGFGFAICQLNVVYNVKASGSYRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLCSDVGLPSL*", "T3-ONT/reads/ff190fe3-e205-4361-a075-f13117d7b60a_0|orf_754-1140": "MSFCVRAQTAANRVVIAPKHSVRVWISGLFSARGWKRMSKKIPATTIVLEWSRAETGVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCGSHELECRINHAKARMKPISPIRLYRIA*" }, "by_method": { "assembly": { "n_variants": 36, "n_variants_any_peptide_matched": 2, "n_variants_non_minimal_peptide_matched": 2, "n_variants_minimal_epitope_matched": 0, "n_variants_all_peptides_matched": 2, "n_peptide_entries": 78, "n_peptide_entries_matched": 2, "n_unique_sequences": 77, "n_unique_sequences_matched": 2, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 2, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 0 }, "assembly-ms1": { "n_variants": 36, "n_variants_any_peptide_matched": 8, "n_variants_non_minimal_peptide_matched": 8, "n_variants_minimal_epitope_matched": 3, "n_variants_all_peptides_matched": 6, "n_peptide_entries": 78, "n_peptide_entries_matched": 15, "n_unique_sequences": 77, "n_unique_sequences_matched": 15, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 12, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 3 }, "assembly-permissive": { "n_variants": 36, "n_variants_any_peptide_matched": 5, "n_variants_non_minimal_peptide_matched": 5, "n_variants_minimal_epitope_matched": 1, "n_variants_all_peptides_matched": 4, "n_peptide_entries": 78, "n_peptide_entries_matched": 8, "n_unique_sequences": 77, "n_unique_sequences_matched": 8, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 7, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 1 }, "assembly-unspliced": { "n_variants": 36, "n_variants_any_peptide_matched": 3, "n_variants_non_minimal_peptide_matched": 3, "n_variants_minimal_epitope_matched": 0, "n_variants_all_peptides_matched": 3, "n_peptide_entries": 78, "n_peptide_entries_matched": 3, "n_unique_sequences": 77, "n_unique_sequences_matched": 3, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 3, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 0 }, "corrected": { "n_variants": 36, "n_variants_any_peptide_matched": 17, "n_variants_non_minimal_peptide_matched": 16, "n_variants_minimal_epitope_matched": 11, "n_variants_all_peptides_matched": 16, "n_peptide_entries": 78, "n_peptide_entries_matched": 40, "n_unique_sequences": 77, "n_unique_sequences_matched": 40, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 29, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 11 }, "isonform": { "n_variants": 36, "n_variants_any_peptide_matched": 3, "n_variants_non_minimal_peptide_matched": 3, "n_variants_minimal_epitope_matched": 0, "n_variants_all_peptides_matched": 3, "n_peptide_entries": 78, "n_peptide_entries_matched": 3, "n_unique_sequences": 77, "n_unique_sequences_matched": 3, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 3, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 0 }, "reads": { "n_variants": 36, "n_variants_any_peptide_matched": 22, "n_variants_non_minimal_peptide_matched": 22, "n_variants_minimal_epitope_matched": 15, "n_variants_all_peptides_matched": 22, "n_peptide_entries": 78, "n_peptide_entries_matched": 53, "n_unique_sequences": 77, "n_unique_sequences_matched": 53, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 38, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 15 }, "spades": { "n_variants": 36, "n_variants_any_peptide_matched": 2, "n_variants_non_minimal_peptide_matched": 2, "n_variants_minimal_epitope_matched": 0, "n_variants_all_peptides_matched": 2, "n_peptide_entries": 78, "n_peptide_entries_matched": 2, "n_unique_sequences": 77, "n_unique_sequences_matched": 2, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 2, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 0 } }, "by_sample": { "T1-ONT": { "n_variants": 36, "n_variants_any_peptide_matched": 18, "n_variants_non_minimal_peptide_matched": 18, "n_variants_minimal_epitope_matched": 10, "n_variants_all_peptides_matched": 17, "n_peptide_entries": 78, "n_peptide_entries_matched": 43, "n_unique_sequences": 77, "n_unique_sequences_matched": 43, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 33, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 10 }, "T1-PacBio": { "n_variants": 36, "n_variants_any_peptide_matched": 13, "n_variants_non_minimal_peptide_matched": 12, "n_variants_minimal_epitope_matched": 7, "n_variants_all_peptides_matched": 12, "n_peptide_entries": 78, "n_peptide_entries_matched": 30, "n_unique_sequences": 77, "n_unique_sequences_matched": 30, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 23, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 7 }, "T2-ILMN": { "n_variants": 36, "n_variants_any_peptide_matched": 2, "n_variants_non_minimal_peptide_matched": 2, "n_variants_minimal_epitope_matched": 0, "n_variants_all_peptides_matched": 2, "n_peptide_entries": 78, "n_peptide_entries_matched": 2, "n_unique_sequences": 77, "n_unique_sequences_matched": 2, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 2, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 0 }, "T2-ONT": { "n_variants": 36, "n_variants_any_peptide_matched": 23, "n_variants_non_minimal_peptide_matched": 23, "n_variants_minimal_epitope_matched": 15, "n_variants_all_peptides_matched": 22, "n_peptide_entries": 78, "n_peptide_entries_matched": 52, "n_unique_sequences": 77, "n_unique_sequences_matched": 52, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 37, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 15 }, "T3-ONT": { "n_variants": 36, "n_variants_any_peptide_matched": 8, "n_variants_non_minimal_peptide_matched": 8, "n_variants_minimal_epitope_matched": 4, "n_variants_all_peptides_matched": 7, "n_peptide_entries": 78, "n_peptide_entries_matched": 16, "n_unique_sequences": 77, "n_unique_sequences_matched": 16, "n_non_minimal_peptide_entries": 59, "n_non_minimal_peptide_entries_matched": 12, "n_minimal_epitope_entries": 19, "n_minimal_epitope_entries_matched": 4 } }, "variants": [ { "variant_id": "ZNF436-chr1-23362762", "gene": "ZNF436", "chrom": "chr1", "pos": 23362762, "ref": "G", "alt": "C", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ser207Cys", "consequence": "missense_variant", "vaccines": [ "CeGaT", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "ZNF436-chr1-23362762.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 15, "sequence": "RTHTGERPYDCNECGKSFGRSCHLIQHQTIH", "scoring_region": { "sequence": "RTHTGERPYDCNECGKSFGRSCHLIQHQTIH", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ed635da6-6802-4838-866e-3a1594427455_0|orf_530-1363", "protein_id": "ed635da6-6802-4838-866e-3a1594427455_0|orf_530-1363", "rna_call_id": "110", "amino_acid_starts": [ 186 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_73-810", "protein_id": "0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_73-810", "rna_call_id": "390", "amino_acid_starts": [ 97 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8584c6aa-d7ef-4420-b58b-af693d382cae_0|orf_544-1956", "protein_id": "8584c6aa-d7ef-4420-b58b-af693d382cae_0|orf_544-1956", "rna_call_id": "22", "amino_acid_starts": [ 186 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "protein_id": "975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "rna_call_id": "42", "amino_acid_starts": [ 186 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "protein_id": "975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "rna_call_id": "252", "amino_acid_starts": [ 186 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/00b808e9-f4ad-4f46-b416-a8d1409ec5a5_0|orf_493-1782", "protein_id": "00b808e9-f4ad-4f46-b416-a8d1409ec5a5_0|orf_493-1782", "rna_call_id": "335", "amino_acid_starts": [ 168 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/835b7632-c72d-4b33-ba49-aeb54f7f116a_0|orf_610-1641", "protein_id": "835b7632-c72d-4b33-ba49-aeb54f7f116a_0|orf_610-1641", "rna_call_id": "153", "amino_acid_starts": [ 159 ] } ] }, { "peptide_id": "ZNF436-chr1-23362762.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "KSFGRSCHL", "scoring_region": { "sequence": "KSFGRSCHL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ed635da6-6802-4838-866e-3a1594427455_0|orf_530-1363", "protein_id": "ed635da6-6802-4838-866e-3a1594427455_0|orf_530-1363", "rna_call_id": "110", "amino_acid_starts": [ 201 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_73-810", "protein_id": "0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_73-810", "rna_call_id": "390", "amino_acid_starts": [ 112 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8584c6aa-d7ef-4420-b58b-af693d382cae_0|orf_544-1956", "protein_id": "8584c6aa-d7ef-4420-b58b-af693d382cae_0|orf_544-1956", "rna_call_id": "22", "amino_acid_starts": [ 201 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "protein_id": "975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "rna_call_id": "42", "amino_acid_starts": [ 201 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "protein_id": "975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "rna_call_id": "252", "amino_acid_starts": [ 201 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/00b808e9-f4ad-4f46-b416-a8d1409ec5a5_0|orf_493-1782", "protein_id": "00b808e9-f4ad-4f46-b416-a8d1409ec5a5_0|orf_493-1782", "rna_call_id": "335", "amino_acid_starts": [ 183 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/835b7632-c72d-4b33-ba49-aeb54f7f116a_0|orf_610-1641", "protein_id": "835b7632-c72d-4b33-ba49-aeb54f7f116a_0|orf_610-1641", "rna_call_id": "153", "amino_acid_starts": [ 174 ] } ] }, { "peptide_id": "ZNF436-chr1-23362762.peptide-3", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 1, "sequence": "GKSFGRSCHLIQHQTI", "scoring_region": { "sequence": "GKSFGRSCHLIQHQTI", "start": 0, "end": 16, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ed635da6-6802-4838-866e-3a1594427455_0|orf_530-1363", "protein_id": "ed635da6-6802-4838-866e-3a1594427455_0|orf_530-1363", "rna_call_id": "110", "amino_acid_starts": [ 200 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_73-810", "protein_id": "0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_73-810", "rna_call_id": "390", "amino_acid_starts": [ 111 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8584c6aa-d7ef-4420-b58b-af693d382cae_0|orf_544-1956", "protein_id": "8584c6aa-d7ef-4420-b58b-af693d382cae_0|orf_544-1956", "rna_call_id": "22", "amino_acid_starts": [ 200 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "protein_id": "975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "rna_call_id": "42", "amino_acid_starts": [ 200 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "protein_id": "975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "rna_call_id": "252", "amino_acid_starts": [ 200 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/00b808e9-f4ad-4f46-b416-a8d1409ec5a5_0|orf_493-1782", "protein_id": "00b808e9-f4ad-4f46-b416-a8d1409ec5a5_0|orf_493-1782", "rna_call_id": "335", "amino_acid_starts": [ 182 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/835b7632-c72d-4b33-ba49-aeb54f7f116a_0|orf_610-1641", "protein_id": "835b7632-c72d-4b33-ba49-aeb54f7f116a_0|orf_610-1641", "rna_call_id": "153", "amino_acid_starts": [ 173 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_311-433", "protein_id": "0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_311-433", "rna_call_id": "94", "variant_amino_acid_start": 39 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ed635da6-6802-4838-866e-3a1594427455_0|orf_530-1363", "protein_id": "ed635da6-6802-4838-866e-3a1594427455_0|orf_530-1363", "rna_call_id": "110", "variant_amino_acid_start": 207 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_73-810", "protein_id": "0aee796b-eb54-4a17-b94b-7ab709186ef1_0|orf_73-810", "rna_call_id": "390", "variant_amino_acid_start": 118 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2296f36c-b15b-404d-b050-53e36afbd9dc_0|orf_944-1066", "protein_id": "2296f36c-b15b-404d-b050-53e36afbd9dc_0|orf_944-1066", "rna_call_id": "472", "variant_amino_acid_start": 39 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8280934|orf_310-432", "protein_id": "molecule/8280934|orf_310-432", "rna_call_id": "7", "variant_amino_acid_start": 39 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/5152|orf_835-957", "protein_id": "5152|orf_835-957", "rna_call_id": "21", "variant_amino_acid_start": 39 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/528d46bb-3248-4304-a439-772ea54360f3_0|orf_749-871", "protein_id": "528d46bb-3248-4304-a439-772ea54360f3_0|orf_749-871", "rna_call_id": "39", "variant_amino_acid_start": 39 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6f886145-44df-4b62-b250-8946cb0ef2e5_0|orf_278-400", "protein_id": "6f886145-44df-4b62-b250-8946cb0ef2e5_0|orf_278-400", "rna_call_id": "60", "variant_amino_acid_start": 39 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8584c6aa-d7ef-4420-b58b-af693d382cae_0|orf_544-1956", "protein_id": "8584c6aa-d7ef-4420-b58b-af693d382cae_0|orf_544-1956", "rna_call_id": "22", "variant_amino_acid_start": 207 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/89f0f4b3-1b2d-44ac-9246-1b70996b114a_0|orf_837-959", "protein_id": "89f0f4b3-1b2d-44ac-9246-1b70996b114a_0|orf_837-959", "rna_call_id": "65", "variant_amino_acid_start": 39 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "protein_id": "975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "rna_call_id": "42", "variant_amino_acid_start": 207 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/97986621-8b51-4e89-8ad0-a016c11698b0_0|orf_647-769", "protein_id": "97986621-8b51-4e89-8ad0-a016c11698b0_0|orf_647-769", "rna_call_id": "68", "variant_amino_acid_start": 39 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/528d46bb-3248-4304-a439-772ea54360f3_0|orf_748-870", "protein_id": "528d46bb-3248-4304-a439-772ea54360f3_0|orf_748-870", "rna_call_id": "148", "variant_amino_acid_start": 39 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6f886145-44df-4b62-b250-8946cb0ef2e5_0|orf_278-400", "protein_id": "6f886145-44df-4b62-b250-8946cb0ef2e5_0|orf_278-400", "rna_call_id": "309", "variant_amino_acid_start": 39 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/89f0f4b3-1b2d-44ac-9246-1b70996b114a_0|orf_838-960", "protein_id": "89f0f4b3-1b2d-44ac-9246-1b70996b114a_0|orf_838-960", "rna_call_id": "365", "variant_amino_acid_start": 39 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "protein_id": "975b36d7-1f5d-4415-9a6c-af52405be1a7_0|orf_213-1487", "rna_call_id": "252", "variant_amino_acid_start": 207 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/00b808e9-f4ad-4f46-b416-a8d1409ec5a5_0|orf_493-1782", "protein_id": "00b808e9-f4ad-4f46-b416-a8d1409ec5a5_0|orf_493-1782", "rna_call_id": "335", "variant_amino_acid_start": 189 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/835b7632-c72d-4b33-ba49-aeb54f7f116a_0|orf_610-1641", "protein_id": "835b7632-c72d-4b33-ba49-aeb54f7f116a_0|orf_610-1641", "rna_call_id": "153", "variant_amino_acid_start": 180 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 3 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 3 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 2 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 2 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 7 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 7 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 2 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 6, "alt_reads": 11, "total_reads": 17, "vaf": 0.6471, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 304, "alt_reads": 0, "total_reads": 304, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 43, "alt_reads": 59, "total_reads": 102, "vaf": 0.5784, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 2, "alt_reads": 2, "total_reads": 4, "vaf": 0.5, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 43, "alt_reads": 53, "total_reads": 96, "vaf": 0.5521, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 18, "alt_reads": 1, "total_reads": 19, "vaf": 0.0526, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 23, "alt_reads": 4, "total_reads": 27, "vaf": 0.1481, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 20, "alt_reads": 1, "total_reads": 21, "vaf": 0.0476, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 4, "alt_reads": 8, "total_reads": 12, "vaf": 0.6667, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 6, "alt_reads": 0, "total_reads": 6, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 7, "alt_reads": 0, "total_reads": 7, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 15, "alt_reads": 3, "total_reads": 18, "vaf": 0.1667, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 16, "alt_reads": 7, "total_reads": 23, "vaf": 0.3043, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 21, "alt_reads": 2, "total_reads": 23, "vaf": 0.087, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 7, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 3, "category": "multiple", "sid_alt_reads": 3, "exacto_raw_rnas": 3 }, "T2-ONT": { "max_alt_reads": 7, "category": "multiple", "sid_alt_reads": 7, "exacto_raw_rnas": 7 }, "T3-ONT": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": 2, "exacto_raw_rnas": 2 }, "T1-PacBio": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 2 }, "T2-ILMN": { "max_alt_reads": 4, "category": "multiple", "sid_alt_reads": 4, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "VPS72-chr1-151185547", "gene": "VPS72", "chrom": "chr1", "pos": 151185547, "ref": "T", "alt": "C", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Lys115Arg", "consequence": "missense_variant", "vaccines": [ "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "VPS72-chr1-151185547.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 20, "sequence": "KSLRPRKVNTPAGSSQKAREERALLPLELQD", "scoring_region": { "sequence": "KSLRPRKVNTPAGSSQKAREERALLPLELQD", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c945b47-476b-4713-95fa-a2612e6dcafe_0|orf_70-702", "protein_id": "1c945b47-476b-4713-95fa-a2612e6dcafe_0|orf_70-702", "rna_call_id": "1157", "amino_acid_starts": [ 94 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1f9cd0ee-44af-44de-ac2d-ef12e50f0d6f_0|orf_153-623", "protein_id": "1f9cd0ee-44af-44de-ac2d-ef12e50f0d6f_0|orf_153-623", "rna_call_id": "2249", "amino_acid_starts": [ 68 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a636625-9675-45a6-a24e-29f18d8811e3_0|orf_60-758", "protein_id": "9a636625-9675-45a6-a24e-29f18d8811e3_0|orf_60-758", "rna_call_id": "6953", "amino_acid_starts": [ 94 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e4fd6bf3-78f2-4ac0-b2d4-c8a968ec3e58_0|orf_65-1159", "protein_id": "e4fd6bf3-78f2-4ac0-b2d4-c8a968ec3e58_0|orf_65-1159", "rna_call_id": "7202", "amino_acid_starts": [ 94 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fb500eee-ab27-49ba-8228-1b7dd2e9ae07_0|orf_58-762", "protein_id": "fb500eee-ab27-49ba-8228-1b7dd2e9ae07_0|orf_58-762", "rna_call_id": "7608", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4771990|orf_46-1140", "protein_id": "molecule/4771990|orf_46-1140", "rna_call_id": "225", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4872135|orf_25-1119", "protein_id": "molecule/4872135|orf_25-1119", "rna_call_id": "190", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1225564|orf_68-949", "protein_id": "molecule/1225564|orf_68-949", "rna_call_id": "393", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/474481|orf_84-1178", "protein_id": "molecule/474481|orf_84-1178", "rna_call_id": "384", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4771990|orf_46-1140", "protein_id": "molecule/4771990|orf_46-1140", "rna_call_id": "588", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4872135|orf_25-657", "protein_id": "molecule/4872135|orf_25-657", "rna_call_id": "459", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6456687|orf_56-556", "protein_id": "molecule/6456687|orf_56-556", "rna_call_id": "321", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6505156|orf_67-1161", "protein_id": "molecule/6505156|orf_67-1161", "rna_call_id": "188", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8453797|orf_79-1173", "protein_id": "molecule/8453797|orf_79-1173", "rna_call_id": "508", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/09dfba99-52f5-415f-be55-449f6c2eb99e_0|orf_77-625", "protein_id": "09dfba99-52f5-415f-be55-449f6c2eb99e_0|orf_77-625", "rna_call_id": "3255", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/22ae54d7-c818-45e6-909e-182904090fd8_0|orf_104-1120", "protein_id": "22ae54d7-c818-45e6-909e-182904090fd8_0|orf_104-1120", "rna_call_id": "4406", "amino_acid_starts": [ 68 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/26bec3aa-9710-481b-9617-70c325f54dc1_0|orf_64-555", "protein_id": "26bec3aa-9710-481b-9617-70c325f54dc1_0|orf_64-555", "rna_call_id": "5568", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2ed03af0-cf3b-4a1f-9bff-fb7de976065a_0|orf_174-1088", "protein_id": "2ed03af0-cf3b-4a1f-9bff-fb7de976065a_0|orf_174-1088", "rna_call_id": "3133", "amino_acid_starts": [ 53 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2f0905d3-6132-46df-bfce-d9ba6a9d03e3_0|orf_61-942", "protein_id": "2f0905d3-6132-46df-bfce-d9ba6a9d03e3_0|orf_61-942", "rna_call_id": "6257", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3dd69f20-f2fb-45ec-a814-f62ccb6d5d36_0|orf_78-1172", "protein_id": "3dd69f20-f2fb-45ec-a814-f62ccb6d5d36_0|orf_78-1172", "rna_call_id": "4984", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/47429369-ed4f-4200-beb3-f3ff95ca6e1d_0|orf_69-815", "protein_id": "47429369-ed4f-4200-beb3-f3ff95ca6e1d_0|orf_69-815", "rna_call_id": "982", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/554e660d-d516-4fbe-9f67-cd81c0b3065f_0|orf_48-1175", "protein_id": "554e660d-d516-4fbe-9f67-cd81c0b3065f_0|orf_48-1175", "rna_call_id": "2591", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/77e604dd-0869-46b3-b4ad-a4c6b39fe2d5_0|orf_77-946", "protein_id": "77e604dd-0869-46b3-b4ad-a4c6b39fe2d5_0|orf_77-946", "rna_call_id": "4147", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/810d1157-6a91-4bee-8eac-9f3fde65a6ac_0|orf_82-1281", "protein_id": "810d1157-6a91-4bee-8eac-9f3fde65a6ac_0|orf_82-1281", "rna_call_id": "1993", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/93b63ca0-bbe7-4919-9a28-bbd5cc37877b_0|orf_141-803", "protein_id": "93b63ca0-bbe7-4919-9a28-bbd5cc37877b_0|orf_141-803", "rna_call_id": "906", "amino_acid_starts": [ 69 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/95ac2ab1-a232-4dd0-8a63-9336bc7df626_0|orf_46-1140", "protein_id": "95ac2ab1-a232-4dd0-8a63-9336bc7df626_0|orf_46-1140", "rna_call_id": "5976", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9dd0c223-c397-4448-addd-f0d305c2c1d6_0|orf_54-935", "protein_id": "9dd0c223-c397-4448-addd-f0d305c2c1d6_0|orf_54-935", "rna_call_id": "1870", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4151748-83db-40a8-ac4f-7601ea9d0aca_0|orf_69-1163", "protein_id": "a4151748-83db-40a8-ac4f-7601ea9d0aca_0|orf_69-1163", "rna_call_id": "4640", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a9e6ced1-68de-43c1-bff9-28180c6f6369_0|orf_141-1157", "protein_id": "a9e6ced1-68de-43c1-bff9-28180c6f6369_0|orf_141-1157", "rna_call_id": "5361", "amino_acid_starts": [ 68 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ae8f443f-f91b-4e88-9c21-17a29eaa02b8_0|orf_77-1165", "protein_id": "ae8f443f-f91b-4e88-9c21-17a29eaa02b8_0|orf_77-1165", "rna_call_id": "5669", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c9c3ebce-5d69-4a7e-b428-0baae680ebfc_0|orf_39-1130", "protein_id": "c9c3ebce-5d69-4a7e-b428-0baae680ebfc_0|orf_39-1130", "rna_call_id": "4414", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d5db12fd-db4d-45ea-9fd2-8327c059a638_0|orf_68-1162", "protein_id": "d5db12fd-db4d-45ea-9fd2-8327c059a638_0|orf_68-1162", "rna_call_id": "6433", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e86af422-6e0a-4100-b9a2-3d2d0bc63a3c_0|orf_48-917", "protein_id": "e86af422-6e0a-4100-b9a2-3d2d0bc63a3c_0|orf_48-917", "rna_call_id": "2313", "amino_acid_starts": [ 94 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/afab8e45-7196-4057-b372-e2a40cd62e1f_0|orf_55-750", "protein_id": "afab8e45-7196-4057-b372-e2a40cd62e1f_0|orf_55-750", "rna_call_id": "2462", "amino_acid_starts": [ 93 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/c947cba7-308e-4779-97a0-b34a375b357c_0|orf_78-1172", "protein_id": "c947cba7-308e-4779-97a0-b34a375b357c_0|orf_78-1172", "rna_call_id": "5345", "amino_acid_starts": [ 94 ] } ] }, { "peptide_id": "VPS72-chr1-151185547.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "ERALLPLEL", "scoring_region": { "sequence": "ERALLPLEL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c945b47-476b-4713-95fa-a2612e6dcafe_0|orf_70-702", "protein_id": "1c945b47-476b-4713-95fa-a2612e6dcafe_0|orf_70-702", "rna_call_id": "1157", "amino_acid_starts": [ 114 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1f9cd0ee-44af-44de-ac2d-ef12e50f0d6f_0|orf_153-623", "protein_id": "1f9cd0ee-44af-44de-ac2d-ef12e50f0d6f_0|orf_153-623", "rna_call_id": "2249", "amino_acid_starts": [ 88 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a636625-9675-45a6-a24e-29f18d8811e3_0|orf_60-758", "protein_id": "9a636625-9675-45a6-a24e-29f18d8811e3_0|orf_60-758", "rna_call_id": "6953", "amino_acid_starts": [ 114 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e4fd6bf3-78f2-4ac0-b2d4-c8a968ec3e58_0|orf_65-1159", "protein_id": "e4fd6bf3-78f2-4ac0-b2d4-c8a968ec3e58_0|orf_65-1159", "rna_call_id": "7202", "amino_acid_starts": [ 114 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fb500eee-ab27-49ba-8228-1b7dd2e9ae07_0|orf_58-762", "protein_id": "fb500eee-ab27-49ba-8228-1b7dd2e9ae07_0|orf_58-762", "rna_call_id": "7608", "amino_acid_starts": [ 114 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4771990|orf_46-1140", "protein_id": "molecule/4771990|orf_46-1140", "rna_call_id": "225", "amino_acid_starts": [ 114 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4872135|orf_25-1119", "protein_id": "molecule/4872135|orf_25-1119", "rna_call_id": "190", "amino_acid_starts": [ 114 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1225564|orf_68-949", "protein_id": "molecule/1225564|orf_68-949", "rna_call_id": "393", "amino_acid_starts": [ 114 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/474481|orf_84-1178", "protein_id": "molecule/474481|orf_84-1178", "rna_call_id": "384", "amino_acid_starts": [ 114 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4771990|orf_46-1140", "protein_id": "molecule/4771990|orf_46-1140", "rna_call_id": "588", "amino_acid_starts": [ 114 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4872135|orf_25-657", "protein_id": "molecule/4872135|orf_25-657", "rna_call_id": "459", "amino_acid_starts": [ 114 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6456687|orf_56-556", "protein_id": "molecule/6456687|orf_56-556", "rna_call_id": "321", "amino_acid_starts": [ 114 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6505156|orf_67-1161", "protein_id": "molecule/6505156|orf_67-1161", "rna_call_id": "188", "amino_acid_starts": [ 114 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8453797|orf_79-1173", "protein_id": "molecule/8453797|orf_79-1173", "rna_call_id": "508", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/09dfba99-52f5-415f-be55-449f6c2eb99e_0|orf_77-625", "protein_id": "09dfba99-52f5-415f-be55-449f6c2eb99e_0|orf_77-625", "rna_call_id": "3255", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/101abcc5-0432-435f-b0ab-29393d2d7f3d_0|orf_66-1160", "protein_id": "101abcc5-0432-435f-b0ab-29393d2d7f3d_0|orf_66-1160", "rna_call_id": "4851", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/22ae54d7-c818-45e6-909e-182904090fd8_0|orf_104-1120", "protein_id": "22ae54d7-c818-45e6-909e-182904090fd8_0|orf_104-1120", "rna_call_id": "4406", "amino_acid_starts": [ 88 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/26bec3aa-9710-481b-9617-70c325f54dc1_0|orf_64-555", "protein_id": "26bec3aa-9710-481b-9617-70c325f54dc1_0|orf_64-555", "rna_call_id": "5568", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2ed03af0-cf3b-4a1f-9bff-fb7de976065a_0|orf_174-1088", "protein_id": "2ed03af0-cf3b-4a1f-9bff-fb7de976065a_0|orf_174-1088", "rna_call_id": "3133", "amino_acid_starts": [ 73 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2f0905d3-6132-46df-bfce-d9ba6a9d03e3_0|orf_61-942", "protein_id": "2f0905d3-6132-46df-bfce-d9ba6a9d03e3_0|orf_61-942", "rna_call_id": "6257", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3dd69f20-f2fb-45ec-a814-f62ccb6d5d36_0|orf_78-1172", "protein_id": "3dd69f20-f2fb-45ec-a814-f62ccb6d5d36_0|orf_78-1172", "rna_call_id": "4984", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/47429369-ed4f-4200-beb3-f3ff95ca6e1d_0|orf_69-815", "protein_id": "47429369-ed4f-4200-beb3-f3ff95ca6e1d_0|orf_69-815", "rna_call_id": "982", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/554e660d-d516-4fbe-9f67-cd81c0b3065f_0|orf_48-1175", "protein_id": "554e660d-d516-4fbe-9f67-cd81c0b3065f_0|orf_48-1175", "rna_call_id": "2591", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/77e604dd-0869-46b3-b4ad-a4c6b39fe2d5_0|orf_77-946", "protein_id": "77e604dd-0869-46b3-b4ad-a4c6b39fe2d5_0|orf_77-946", "rna_call_id": "4147", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/810d1157-6a91-4bee-8eac-9f3fde65a6ac_0|orf_82-1281", "protein_id": "810d1157-6a91-4bee-8eac-9f3fde65a6ac_0|orf_82-1281", "rna_call_id": "1993", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/93b63ca0-bbe7-4919-9a28-bbd5cc37877b_0|orf_141-803", "protein_id": "93b63ca0-bbe7-4919-9a28-bbd5cc37877b_0|orf_141-803", "rna_call_id": "906", "amino_acid_starts": [ 89 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/95ac2ab1-a232-4dd0-8a63-9336bc7df626_0|orf_46-1140", "protein_id": "95ac2ab1-a232-4dd0-8a63-9336bc7df626_0|orf_46-1140", "rna_call_id": "5976", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9dd0c223-c397-4448-addd-f0d305c2c1d6_0|orf_54-935", "protein_id": "9dd0c223-c397-4448-addd-f0d305c2c1d6_0|orf_54-935", "rna_call_id": "1870", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4151748-83db-40a8-ac4f-7601ea9d0aca_0|orf_69-1163", "protein_id": "a4151748-83db-40a8-ac4f-7601ea9d0aca_0|orf_69-1163", "rna_call_id": "4640", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a9e6ced1-68de-43c1-bff9-28180c6f6369_0|orf_141-1157", "protein_id": "a9e6ced1-68de-43c1-bff9-28180c6f6369_0|orf_141-1157", "rna_call_id": "5361", "amino_acid_starts": [ 88 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ae8f443f-f91b-4e88-9c21-17a29eaa02b8_0|orf_77-1165", "protein_id": "ae8f443f-f91b-4e88-9c21-17a29eaa02b8_0|orf_77-1165", "rna_call_id": "5669", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c9c3ebce-5d69-4a7e-b428-0baae680ebfc_0|orf_39-1130", "protein_id": "c9c3ebce-5d69-4a7e-b428-0baae680ebfc_0|orf_39-1130", "rna_call_id": "4414", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d5db12fd-db4d-45ea-9fd2-8327c059a638_0|orf_68-1162", "protein_id": "d5db12fd-db4d-45ea-9fd2-8327c059a638_0|orf_68-1162", "rna_call_id": "6433", "amino_acid_starts": [ 114 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e86af422-6e0a-4100-b9a2-3d2d0bc63a3c_0|orf_48-917", "protein_id": "e86af422-6e0a-4100-b9a2-3d2d0bc63a3c_0|orf_48-917", "rna_call_id": "2313", "amino_acid_starts": [ 114 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/afab8e45-7196-4057-b372-e2a40cd62e1f_0|orf_55-750", "protein_id": "afab8e45-7196-4057-b372-e2a40cd62e1f_0|orf_55-750", "rna_call_id": "2462", "amino_acid_starts": [ 113 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/c947cba7-308e-4779-97a0-b34a375b357c_0|orf_78-1172", "protein_id": "c947cba7-308e-4779-97a0-b34a375b357c_0|orf_78-1172", "rna_call_id": "5345", "amino_acid_starts": [ 114 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/e272f1f5-1e2b-4142-abf7-5c1b057a2380_0|orf_48-1247", "protein_id": "e272f1f5-1e2b-4142-abf7-5c1b057a2380_0|orf_48-1247", "rna_call_id": "1740", "amino_acid_starts": [ 114 ] } ] }, { "peptide_id": "VPS72-chr1-151185547.peptide-3", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 8, "sequence": "GSSQKAREERALLPLELQDDGSDSRKS", "scoring_region": { "sequence": "GSSQKAREERALLPLELQDDGSDSRKS", "start": 0, "end": 27, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c945b47-476b-4713-95fa-a2612e6dcafe_0|orf_70-702", "protein_id": "1c945b47-476b-4713-95fa-a2612e6dcafe_0|orf_70-702", "rna_call_id": "1157", "amino_acid_starts": [ 106 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1f9cd0ee-44af-44de-ac2d-ef12e50f0d6f_0|orf_153-623", "protein_id": "1f9cd0ee-44af-44de-ac2d-ef12e50f0d6f_0|orf_153-623", "rna_call_id": "2249", "amino_acid_starts": [ 80 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a636625-9675-45a6-a24e-29f18d8811e3_0|orf_60-758", "protein_id": "9a636625-9675-45a6-a24e-29f18d8811e3_0|orf_60-758", "rna_call_id": "6953", "amino_acid_starts": [ 106 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e4fd6bf3-78f2-4ac0-b2d4-c8a968ec3e58_0|orf_65-1159", "protein_id": "e4fd6bf3-78f2-4ac0-b2d4-c8a968ec3e58_0|orf_65-1159", "rna_call_id": "7202", "amino_acid_starts": [ 106 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fb500eee-ab27-49ba-8228-1b7dd2e9ae07_0|orf_58-762", "protein_id": "fb500eee-ab27-49ba-8228-1b7dd2e9ae07_0|orf_58-762", "rna_call_id": "7608", "amino_acid_starts": [ 106 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4771990|orf_46-1140", "protein_id": "molecule/4771990|orf_46-1140", "rna_call_id": "225", "amino_acid_starts": [ 106 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4872135|orf_25-1119", "protein_id": "molecule/4872135|orf_25-1119", "rna_call_id": "190", "amino_acid_starts": [ 106 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1225564|orf_68-949", "protein_id": "molecule/1225564|orf_68-949", "rna_call_id": "393", "amino_acid_starts": [ 106 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/474481|orf_84-1178", "protein_id": "molecule/474481|orf_84-1178", "rna_call_id": "384", "amino_acid_starts": [ 106 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4771990|orf_46-1140", "protein_id": "molecule/4771990|orf_46-1140", "rna_call_id": "588", "amino_acid_starts": [ 106 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4872135|orf_25-657", "protein_id": "molecule/4872135|orf_25-657", "rna_call_id": "459", "amino_acid_starts": [ 106 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6456687|orf_56-556", "protein_id": "molecule/6456687|orf_56-556", "rna_call_id": "321", "amino_acid_starts": [ 106 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6505156|orf_67-1161", "protein_id": "molecule/6505156|orf_67-1161", "rna_call_id": "188", "amino_acid_starts": [ 106 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8453797|orf_79-1173", "protein_id": "molecule/8453797|orf_79-1173", "rna_call_id": "508", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/09dfba99-52f5-415f-be55-449f6c2eb99e_0|orf_77-625", "protein_id": "09dfba99-52f5-415f-be55-449f6c2eb99e_0|orf_77-625", "rna_call_id": "3255", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/101abcc5-0432-435f-b0ab-29393d2d7f3d_0|orf_66-1160", "protein_id": "101abcc5-0432-435f-b0ab-29393d2d7f3d_0|orf_66-1160", "rna_call_id": "4851", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/22ae54d7-c818-45e6-909e-182904090fd8_0|orf_104-1120", "protein_id": "22ae54d7-c818-45e6-909e-182904090fd8_0|orf_104-1120", "rna_call_id": "4406", "amino_acid_starts": [ 80 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/26bec3aa-9710-481b-9617-70c325f54dc1_0|orf_64-555", "protein_id": "26bec3aa-9710-481b-9617-70c325f54dc1_0|orf_64-555", "rna_call_id": "5568", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2ed03af0-cf3b-4a1f-9bff-fb7de976065a_0|orf_174-1088", "protein_id": "2ed03af0-cf3b-4a1f-9bff-fb7de976065a_0|orf_174-1088", "rna_call_id": "3133", "amino_acid_starts": [ 65 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2f0905d3-6132-46df-bfce-d9ba6a9d03e3_0|orf_61-942", "protein_id": "2f0905d3-6132-46df-bfce-d9ba6a9d03e3_0|orf_61-942", "rna_call_id": "6257", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3dd69f20-f2fb-45ec-a814-f62ccb6d5d36_0|orf_78-1172", "protein_id": "3dd69f20-f2fb-45ec-a814-f62ccb6d5d36_0|orf_78-1172", "rna_call_id": "4984", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/47429369-ed4f-4200-beb3-f3ff95ca6e1d_0|orf_69-815", "protein_id": "47429369-ed4f-4200-beb3-f3ff95ca6e1d_0|orf_69-815", "rna_call_id": "982", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/554e660d-d516-4fbe-9f67-cd81c0b3065f_0|orf_48-1175", "protein_id": "554e660d-d516-4fbe-9f67-cd81c0b3065f_0|orf_48-1175", "rna_call_id": "2591", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/77e604dd-0869-46b3-b4ad-a4c6b39fe2d5_0|orf_77-946", "protein_id": "77e604dd-0869-46b3-b4ad-a4c6b39fe2d5_0|orf_77-946", "rna_call_id": "4147", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/810d1157-6a91-4bee-8eac-9f3fde65a6ac_0|orf_82-1281", "protein_id": "810d1157-6a91-4bee-8eac-9f3fde65a6ac_0|orf_82-1281", "rna_call_id": "1993", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/93b63ca0-bbe7-4919-9a28-bbd5cc37877b_0|orf_141-803", "protein_id": "93b63ca0-bbe7-4919-9a28-bbd5cc37877b_0|orf_141-803", "rna_call_id": "906", "amino_acid_starts": [ 81 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/95ac2ab1-a232-4dd0-8a63-9336bc7df626_0|orf_46-1140", "protein_id": "95ac2ab1-a232-4dd0-8a63-9336bc7df626_0|orf_46-1140", "rna_call_id": "5976", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9dd0c223-c397-4448-addd-f0d305c2c1d6_0|orf_54-935", "protein_id": "9dd0c223-c397-4448-addd-f0d305c2c1d6_0|orf_54-935", "rna_call_id": "1870", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4151748-83db-40a8-ac4f-7601ea9d0aca_0|orf_69-1163", "protein_id": "a4151748-83db-40a8-ac4f-7601ea9d0aca_0|orf_69-1163", "rna_call_id": "4640", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a9e6ced1-68de-43c1-bff9-28180c6f6369_0|orf_141-1157", "protein_id": "a9e6ced1-68de-43c1-bff9-28180c6f6369_0|orf_141-1157", "rna_call_id": "5361", "amino_acid_starts": [ 80 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ae8f443f-f91b-4e88-9c21-17a29eaa02b8_0|orf_77-1165", "protein_id": "ae8f443f-f91b-4e88-9c21-17a29eaa02b8_0|orf_77-1165", "rna_call_id": "5669", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c9c3ebce-5d69-4a7e-b428-0baae680ebfc_0|orf_39-1130", "protein_id": "c9c3ebce-5d69-4a7e-b428-0baae680ebfc_0|orf_39-1130", "rna_call_id": "4414", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d5db12fd-db4d-45ea-9fd2-8327c059a638_0|orf_68-1162", "protein_id": "d5db12fd-db4d-45ea-9fd2-8327c059a638_0|orf_68-1162", "rna_call_id": "6433", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e86af422-6e0a-4100-b9a2-3d2d0bc63a3c_0|orf_48-917", "protein_id": "e86af422-6e0a-4100-b9a2-3d2d0bc63a3c_0|orf_48-917", "rna_call_id": "2313", "amino_acid_starts": [ 106 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/afab8e45-7196-4057-b372-e2a40cd62e1f_0|orf_55-750", "protein_id": "afab8e45-7196-4057-b372-e2a40cd62e1f_0|orf_55-750", "rna_call_id": "2462", "amino_acid_starts": [ 105 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/c947cba7-308e-4779-97a0-b34a375b357c_0|orf_78-1172", "protein_id": "c947cba7-308e-4779-97a0-b34a375b357c_0|orf_78-1172", "rna_call_id": "5345", "amino_acid_starts": [ 106 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c945b47-476b-4713-95fa-a2612e6dcafe_0|orf_70-702", "protein_id": "1c945b47-476b-4713-95fa-a2612e6dcafe_0|orf_70-702", "rna_call_id": "1157", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1f9cd0ee-44af-44de-ac2d-ef12e50f0d6f_0|orf_153-623", "protein_id": "1f9cd0ee-44af-44de-ac2d-ef12e50f0d6f_0|orf_153-623", "rna_call_id": "2249", "variant_amino_acid_start": 89 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3fdd8c14-36c7-47d8-bb50-9fe6094b1f3a_0|orf_143-478", "protein_id": "3fdd8c14-36c7-47d8-bb50-9fe6094b1f3a_0|orf_143-478", "rna_call_id": "833", "variant_amino_acid_start": 82 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a636625-9675-45a6-a24e-29f18d8811e3_0|orf_60-758", "protein_id": "9a636625-9675-45a6-a24e-29f18d8811e3_0|orf_60-758", "rna_call_id": "6953", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e4fd6bf3-78f2-4ac0-b2d4-c8a968ec3e58_0|orf_65-1159", "protein_id": "e4fd6bf3-78f2-4ac0-b2d4-c8a968ec3e58_0|orf_65-1159", "rna_call_id": "7202", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fb500eee-ab27-49ba-8228-1b7dd2e9ae07_0|orf_58-762", "protein_id": "fb500eee-ab27-49ba-8228-1b7dd2e9ae07_0|orf_58-762", "rna_call_id": "7608", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4771990|orf_46-1140", "protein_id": "molecule/4771990|orf_46-1140", "rna_call_id": "225", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4872135|orf_25-1119", "protein_id": "molecule/4872135|orf_25-1119", "rna_call_id": "190", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1225564|orf_68-949", "protein_id": "molecule/1225564|orf_68-949", "rna_call_id": "393", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/474481|orf_84-1178", "protein_id": "molecule/474481|orf_84-1178", "rna_call_id": "384", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4771990|orf_46-1140", "protein_id": "molecule/4771990|orf_46-1140", "rna_call_id": "588", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4872135|orf_25-657", "protein_id": "molecule/4872135|orf_25-657", "rna_call_id": "459", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6456687|orf_56-556", "protein_id": "molecule/6456687|orf_56-556", "rna_call_id": "321", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6505156|orf_67-1161", "protein_id": "molecule/6505156|orf_67-1161", "rna_call_id": "188", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8453797|orf_79-1173", "protein_id": "molecule/8453797|orf_79-1173", "rna_call_id": "508", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/09dfba99-52f5-415f-be55-449f6c2eb99e_0|orf_77-625", "protein_id": "09dfba99-52f5-415f-be55-449f6c2eb99e_0|orf_77-625", "rna_call_id": "3255", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/101abcc5-0432-435f-b0ab-29393d2d7f3d_0|orf_66-1160", "protein_id": "101abcc5-0432-435f-b0ab-29393d2d7f3d_0|orf_66-1160", "rna_call_id": "4851", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/15cea865-5478-4e03-8b38-0dae6d397d6d_0|orf_73-642", "protein_id": "15cea865-5478-4e03-8b38-0dae6d397d6d_0|orf_73-642", "rna_call_id": "4271", "variant_amino_acid_start": 114 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/22ae54d7-c818-45e6-909e-182904090fd8_0|orf_104-1120", "protein_id": "22ae54d7-c818-45e6-909e-182904090fd8_0|orf_104-1120", "rna_call_id": "4406", "variant_amino_acid_start": 89 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/26bec3aa-9710-481b-9617-70c325f54dc1_0|orf_64-555", "protein_id": "26bec3aa-9710-481b-9617-70c325f54dc1_0|orf_64-555", "rna_call_id": "5568", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2ed03af0-cf3b-4a1f-9bff-fb7de976065a_0|orf_174-1088", "protein_id": "2ed03af0-cf3b-4a1f-9bff-fb7de976065a_0|orf_174-1088", "rna_call_id": "3133", "variant_amino_acid_start": 74 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2f0905d3-6132-46df-bfce-d9ba6a9d03e3_0|orf_61-942", "protein_id": "2f0905d3-6132-46df-bfce-d9ba6a9d03e3_0|orf_61-942", "rna_call_id": "6257", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3dd69f20-f2fb-45ec-a814-f62ccb6d5d36_0|orf_78-1172", "protein_id": "3dd69f20-f2fb-45ec-a814-f62ccb6d5d36_0|orf_78-1172", "rna_call_id": "4984", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/47429369-ed4f-4200-beb3-f3ff95ca6e1d_0|orf_69-815", "protein_id": "47429369-ed4f-4200-beb3-f3ff95ca6e1d_0|orf_69-815", "rna_call_id": "982", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/554e660d-d516-4fbe-9f67-cd81c0b3065f_0|orf_48-1175", "protein_id": "554e660d-d516-4fbe-9f67-cd81c0b3065f_0|orf_48-1175", "rna_call_id": "2591", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/60677a00-2a65-4fe9-b6db-c2a53adfbbf7_0|orf_66-866", "protein_id": "60677a00-2a65-4fe9-b6db-c2a53adfbbf7_0|orf_66-866", "rna_call_id": "2821", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/77e604dd-0869-46b3-b4ad-a4c6b39fe2d5_0|orf_77-946", "protein_id": "77e604dd-0869-46b3-b4ad-a4c6b39fe2d5_0|orf_77-946", "rna_call_id": "4147", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/810d1157-6a91-4bee-8eac-9f3fde65a6ac_0|orf_82-1281", "protein_id": "810d1157-6a91-4bee-8eac-9f3fde65a6ac_0|orf_82-1281", "rna_call_id": "1993", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/93b63ca0-bbe7-4919-9a28-bbd5cc37877b_0|orf_141-803", "protein_id": "93b63ca0-bbe7-4919-9a28-bbd5cc37877b_0|orf_141-803", "rna_call_id": "906", "variant_amino_acid_start": 90 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/95ac2ab1-a232-4dd0-8a63-9336bc7df626_0|orf_46-1140", "protein_id": "95ac2ab1-a232-4dd0-8a63-9336bc7df626_0|orf_46-1140", "rna_call_id": "5976", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9dd0c223-c397-4448-addd-f0d305c2c1d6_0|orf_54-935", "protein_id": "9dd0c223-c397-4448-addd-f0d305c2c1d6_0|orf_54-935", "rna_call_id": "1870", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4151748-83db-40a8-ac4f-7601ea9d0aca_0|orf_69-1163", "protein_id": "a4151748-83db-40a8-ac4f-7601ea9d0aca_0|orf_69-1163", "rna_call_id": "4640", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a9e6ced1-68de-43c1-bff9-28180c6f6369_0|orf_141-1157", "protein_id": "a9e6ced1-68de-43c1-bff9-28180c6f6369_0|orf_141-1157", "rna_call_id": "5361", "variant_amino_acid_start": 89 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ae8f443f-f91b-4e88-9c21-17a29eaa02b8_0|orf_77-1165", "protein_id": "ae8f443f-f91b-4e88-9c21-17a29eaa02b8_0|orf_77-1165", "rna_call_id": "5669", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c9c3ebce-5d69-4a7e-b428-0baae680ebfc_0|orf_39-1130", "protein_id": "c9c3ebce-5d69-4a7e-b428-0baae680ebfc_0|orf_39-1130", "rna_call_id": "4414", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d5db12fd-db4d-45ea-9fd2-8327c059a638_0|orf_68-1162", "protein_id": "d5db12fd-db4d-45ea-9fd2-8327c059a638_0|orf_68-1162", "rna_call_id": "6433", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dd1dbd1f-6498-498b-9df6-aa46a76eaf1c_0|orf_82-714", "protein_id": "dd1dbd1f-6498-498b-9df6-aa46a76eaf1c_0|orf_82-714", "rna_call_id": "3112", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e86af422-6e0a-4100-b9a2-3d2d0bc63a3c_0|orf_48-917", "protein_id": "e86af422-6e0a-4100-b9a2-3d2d0bc63a3c_0|orf_48-917", "rna_call_id": "2313", "variant_amino_acid_start": 115 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/afab8e45-7196-4057-b372-e2a40cd62e1f_0|orf_55-750", "protein_id": "afab8e45-7196-4057-b372-e2a40cd62e1f_0|orf_55-750", "rna_call_id": "2462", "variant_amino_acid_start": 114 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/c947cba7-308e-4779-97a0-b34a375b357c_0|orf_78-1172", "protein_id": "c947cba7-308e-4779-97a0-b34a375b357c_0|orf_78-1172", "rna_call_id": "5345", "variant_amino_acid_start": 115 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/e272f1f5-1e2b-4142-abf7-5c1b057a2380_0|orf_48-1247", "protein_id": "e272f1f5-1e2b-4142-abf7-5c1b057a2380_0|orf_48-1247", "rna_call_id": "1740", "variant_amino_acid_start": 115 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 19 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 2 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 7 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 41 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 4 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 178, "alt_reads": 0, "total_reads": 178, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 943, "alt_reads": 0, "total_reads": 943, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 339, "alt_reads": 16, "total_reads": 356, "vaf": 0.0449, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 30, "alt_reads": 0, "total_reads": 30, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 338, "alt_reads": 17, "total_reads": 356, "vaf": 0.0478, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 53, "alt_reads": 5, "total_reads": 58, "vaf": 0.0862, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 100, "alt_reads": 9, "total_reads": 109, "vaf": 0.0826, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 49, "alt_reads": 5, "total_reads": 54, "vaf": 0.0926, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 320, "alt_reads": 13, "total_reads": 333, "vaf": 0.039, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 338, "alt_reads": 35, "total_reads": 373, "vaf": 0.0938, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 30, "alt_reads": 9, "total_reads": 39, "vaf": 0.2308, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 303, "alt_reads": 0, "total_reads": 303, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1434, "alt_reads": 51, "total_reads": 1485, "vaf": 0.0343, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1645, "alt_reads": 161, "total_reads": 1806, "vaf": 0.0891, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1146, "alt_reads": 12, "total_reads": 1159, "vaf": 0.0104, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 161, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 51, "category": "multiple", "sid_alt_reads": 51, "exacto_raw_rnas": 19 }, "T2-ONT": { "max_alt_reads": 161, "category": "multiple", "sid_alt_reads": 161, "exacto_raw_rnas": 41 }, "T3-ONT": { "max_alt_reads": 12, "category": "multiple", "sid_alt_reads": 12, "exacto_raw_rnas": 4 }, "T1-PacBio": { "max_alt_reads": 7, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 7 }, "T2-ILMN": { "max_alt_reads": 9, "category": "multiple", "sid_alt_reads": 9, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "PIP5K1A-chr1-151242178", "gene": "PIP5K1A", "chrom": "chr1", "pos": 151242178, "ref": "AG", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Gly474fs", "consequence": "frameshift_variant", "vaccines": [ "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "PIP5K1A-chr1-151242178.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 10, "sequence": "FRSGSSFSRRAAPVATPALLTSHRSLGNTRHK", "scoring_region": { "sequence": "FRSGSSFSRRAAPVATPALLTSHRSLGNTRHK", "start": 0, "end": 32, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7b36debd-f633-4644-8e15-fc7396eb273c_0|orf_16-1203", "protein_id": "7b36debd-f633-4644-8e15-fc7396eb273c_0|orf_16-1203", "rna_call_id": "8629", "amino_acid_starts": [ 364 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c8cbc7fc-ed01-49c3-a69e-4b29120b686f_0|orf_123-710", "protein_id": "c8cbc7fc-ed01-49c3-a69e-4b29120b686f_0|orf_123-710", "rna_call_id": "8770", "amino_acid_starts": [ 164 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c99f1365-d34c-475d-9af5-1ea342ca9a11_0|orf_1380-1904", "protein_id": "c99f1365-d34c-475d-9af5-1ea342ca9a11_0|orf_1380-1904", "rna_call_id": "7067", "amino_acid_starts": [ 143 ] } ] }, { "peptide_id": "PIP5K1A-chr1-151242178.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "AAPVATPAL", "scoring_region": { "sequence": "AAPVATPAL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7b36debd-f633-4644-8e15-fc7396eb273c_0|orf_16-1203", "protein_id": "7b36debd-f633-4644-8e15-fc7396eb273c_0|orf_16-1203", "rna_call_id": "8629", "amino_acid_starts": [ 374 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c8cbc7fc-ed01-49c3-a69e-4b29120b686f_0|orf_123-710", "protein_id": "c8cbc7fc-ed01-49c3-a69e-4b29120b686f_0|orf_123-710", "rna_call_id": "8770", "amino_acid_starts": [ 174 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c99f1365-d34c-475d-9af5-1ea342ca9a11_0|orf_1380-1904", "protein_id": "c99f1365-d34c-475d-9af5-1ea342ca9a11_0|orf_1380-1904", "rna_call_id": "7067", "amino_acid_starts": [ 153 ] } ] }, { "peptide_id": "PIP5K1A-chr1-151242178.peptide-3", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 6, "sequence": "SSFSRRAAPVATPALLTSHR", "scoring_region": { "sequence": "SSFSRRAAPVATPALLTSHR", "start": 0, "end": 20, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7b36debd-f633-4644-8e15-fc7396eb273c_0|orf_16-1203", "protein_id": "7b36debd-f633-4644-8e15-fc7396eb273c_0|orf_16-1203", "rna_call_id": "8629", "amino_acid_starts": [ 368 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c8cbc7fc-ed01-49c3-a69e-4b29120b686f_0|orf_123-710", "protein_id": "c8cbc7fc-ed01-49c3-a69e-4b29120b686f_0|orf_123-710", "rna_call_id": "8770", "amino_acid_starts": [ 168 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c99f1365-d34c-475d-9af5-1ea342ca9a11_0|orf_1380-1904", "protein_id": "c99f1365-d34c-475d-9af5-1ea342ca9a11_0|orf_1380-1904", "rna_call_id": "7067", "amino_acid_starts": [ 147 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": null, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7b36debd-f633-4644-8e15-fc7396eb273c_0|orf_16-1203", "protein_id": "7b36debd-f633-4644-8e15-fc7396eb273c_0|orf_16-1203", "rna_call_id": "8629", "variant_amino_acid_start": 375 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c8cbc7fc-ed01-49c3-a69e-4b29120b686f_0|orf_123-710", "protein_id": "c8cbc7fc-ed01-49c3-a69e-4b29120b686f_0|orf_123-710", "rna_call_id": "8770", "variant_amino_acid_start": 175 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a23bf35e-97d4-4537-8cd0-aa658cf149b1_0|orf_1476-2156", "protein_id": "a23bf35e-97d4-4537-8cd0-aa658cf149b1_0|orf_1476-2156", "rna_call_id": "6936", "variant_amino_acid_start": 111 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c99f1365-d34c-475d-9af5-1ea342ca9a11_0|orf_1380-1904", "protein_id": "c99f1365-d34c-475d-9af5-1ea342ca9a11_0|orf_1380-1904", "rna_call_id": "7067", "variant_amino_acid_start": 154 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 3 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 5 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 114, "alt_reads": 0, "total_reads": 114, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 1649, "alt_reads": 0, "total_reads": 1658, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 90, "alt_reads": 13, "total_reads": 103, "vaf": 0.1262, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 80, "alt_reads": 0, "total_reads": 81, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 94, "alt_reads": 13, "total_reads": 107, "vaf": 0.1215, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 72, "alt_reads": 5, "total_reads": 77, "vaf": 0.0649, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 149, "alt_reads": 7, "total_reads": 156, "vaf": 0.0449, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 72, "alt_reads": 5, "total_reads": 77, "vaf": 0.0649, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 117, "alt_reads": 1, "total_reads": 120, "vaf": 0.0083, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 73, "alt_reads": 2, "total_reads": 77, "vaf": 0.026, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 12, "alt_reads": 3, "total_reads": 15, "vaf": 0.2, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 99, "alt_reads": 0, "total_reads": 99, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 36, "alt_reads": 4, "total_reads": 40, "vaf": 0.1, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 71, "alt_reads": 5, "total_reads": 76, "vaf": 0.0658, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 119, "alt_reads": 0, "total_reads": 119, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 7, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 4, "category": "multiple", "sid_alt_reads": 4, "exacto_raw_rnas": 3 }, "T2-ONT": { "max_alt_reads": 5, "category": "multiple", "sid_alt_reads": 5, "exacto_raw_rnas": 5 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 7, "category": "multiple", "sid_alt_reads": 7, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "PRRC2C-chr1-171540477", "gene": "PRRC2C", "chrom": "chr1", "pos": 171540477, "ref": "G", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Arg1004Met", "consequence": "missense_variant", "vaccines": [ "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "PRRC2C-chr1-171540477.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 15, "sequence": "YKSKSETRWGPRPSSNRMEEVNDRPVRR", "scoring_region": { "sequence": "YKSKSETRWGPRPSSNRMEEVNDRPVRR", "start": 0, "end": 28, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/908bb333-b044-4664-b234-3b3ca9a51574_0|orf_37-1479", "protein_id": "908bb333-b044-4664-b234-3b3ca9a51574_0|orf_37-1479", "rna_call_id": "12581", "amino_acid_starts": [ 432 ] } ] }, { "peptide_id": "PRRC2C-chr1-171540477.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "NRMEEVNDR", "scoring_region": { "sequence": "NRMEEVNDR", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/908bb333-b044-4664-b234-3b3ca9a51574_0|orf_37-1479", "protein_id": "908bb333-b044-4664-b234-3b3ca9a51574_0|orf_37-1479", "rna_call_id": "12581", "amino_acid_starts": [ 447 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ee244e5c-a59c-4fdc-aaf7-5b22f6b98c1c_0|orf_157-1401", "protein_id": "ee244e5c-a59c-4fdc-aaf7-5b22f6b98c1c_0|orf_157-1401", "rna_call_id": "13844", "amino_acid_starts": [ 391 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/32a28409-a2a8-4223-8672-7cae2e3d084c_0|orf_377-505", "protein_id": "32a28409-a2a8-4223-8672-7cae2e3d084c_0|orf_377-505", "rna_call_id": "14225", "variant_amino_acid_start": 1 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/acd199cf-3c4d-4dfc-bed2-0f986f934d5a_0|orf_315-677", "protein_id": "acd199cf-3c4d-4dfc-bed2-0f986f934d5a_0|orf_315-677", "rna_call_id": "14460", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/908bb333-b044-4664-b234-3b3ca9a51574_0|orf_37-1479", "protein_id": "908bb333-b044-4664-b234-3b3ca9a51574_0|orf_37-1479", "rna_call_id": "12581", "variant_amino_acid_start": 449 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d2bb7c79-6a56-4b0f-8443-6d2222800287_0|orf_148-1515", "protein_id": "d2bb7c79-6a56-4b0f-8443-6d2222800287_0|orf_148-1515", "rna_call_id": "10567", "variant_amino_acid_start": 448 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d79182b3-02d4-4b3d-9400-e9f0828b670c_0|orf_10-1302", "protein_id": "d79182b3-02d4-4b3d-9400-e9f0828b670c_0|orf_10-1302", "rna_call_id": "11870", "variant_amino_acid_start": 423 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e5ffc7e0-4dbf-403f-afb5-1c4a611e1f8b_0|orf_96-1298", "protein_id": "e5ffc7e0-4dbf-403f-afb5-1c4a611e1f8b_0|orf_96-1298", "rna_call_id": "15609", "variant_amino_acid_start": 393 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ee244e5c-a59c-4fdc-aaf7-5b22f6b98c1c_0|orf_157-1401", "protein_id": "ee244e5c-a59c-4fdc-aaf7-5b22f6b98c1c_0|orf_157-1401", "rna_call_id": "13844", "variant_amino_acid_start": 393 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 15 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 3 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 38 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 1013, "alt_reads": 0, "total_reads": 1015, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 1203, "alt_reads": 1, "total_reads": 1204, "vaf": 0.0008, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 763, "alt_reads": 44, "total_reads": 807, "vaf": 0.0545, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 107, "alt_reads": 0, "total_reads": 107, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 748, "alt_reads": 42, "total_reads": 790, "vaf": 0.0532, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 368, "alt_reads": 43, "total_reads": 412, "vaf": 0.1044, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 815, "alt_reads": 83, "total_reads": 901, "vaf": 0.0921, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 382, "alt_reads": 42, "total_reads": 425, "vaf": 0.0988, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 68, "alt_reads": 1, "total_reads": 69, "vaf": 0.0145, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 374, "alt_reads": 26, "total_reads": 400, "vaf": 0.065, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 55, "alt_reads": 10, "total_reads": 65, "vaf": 0.1538, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 243, "alt_reads": 3, "total_reads": 246, "vaf": 0.0122, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 520, "alt_reads": 15, "total_reads": 538, "vaf": 0.0279, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1849, "alt_reads": 144, "total_reads": 2000, "vaf": 0.072, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1696, "alt_reads": 7, "total_reads": 1708, "vaf": 0.0041, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 144, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 15, "category": "multiple", "sid_alt_reads": 15, "exacto_raw_rnas": 15 }, "T2-ONT": { "max_alt_reads": 144, "category": "multiple", "sid_alt_reads": 144, "exacto_raw_rnas": 38 }, "T3-ONT": { "max_alt_reads": 7, "category": "multiple", "sid_alt_reads": 7, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 3, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 3 }, "T2-ILMN": { "max_alt_reads": 83, "category": "multiple", "sid_alt_reads": 83, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "CENPL-chr1-173811223", "gene": "CENPL", "chrom": "chr1", "pos": 173811223, "ref": "G", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Pro26His", "consequence": "missense_variant", "vaccines": [ "JLF V3" ], "published_vaccine_peptides": [ { "peptide_id": "CENPL-chr1-173811223.peptide-1", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "SSRPEDYFIGATHLQKRLESVRK", "scoring_region": { "sequence": "SSRPEDYFIGATHLQKRLESVRK", "start": 0, "end": 23, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_780-1187", "protein_id": "06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_780-1187", "rna_call_id": "4331", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0d244a77-419b-4138-8c89-076c0942ae84_0|orf_296-1207", "protein_id": "0d244a77-419b-4138-8c89-076c0942ae84_0|orf_296-1207", "rna_call_id": "4094", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-1077", "protein_id": "0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-1077", "rna_call_id": "4147", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7369afa2-9471-4079-93f5-2ba142dd8f7f_0|orf_361-1533", "protein_id": "7369afa2-9471-4079-93f5-2ba142dd8f7f_0|orf_361-1533", "rna_call_id": "3975", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8bf6cc3a-5c83-458e-86b9-5fc5fbc90106_0|orf_172-1206", "protein_id": "8bf6cc3a-5c83-458e-86b9-5fc5fbc90106_0|orf_172-1206", "rna_call_id": "4102", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_790-1962", "protein_id": "a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_790-1962", "rna_call_id": "3861", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_375-1217", "protein_id": "aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_375-1217", "rna_call_id": "3983", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e9e00242-3724-4495-8ed1-b14d41779c87_0|orf_224-1258", "protein_id": "e9e00242-3724-4495-8ed1-b14d41779c87_0|orf_224-1258", "rna_call_id": "3941", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fc8654b9-cb4d-4ab2-8d0d-539e02c0dea2_0|orf_231-1265", "protein_id": "fc8654b9-cb4d-4ab2-8d0d-539e02c0dea2_0|orf_231-1265", "rna_call_id": "4187", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_777-1184", "protein_id": "06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_777-1184", "rna_call_id": "17063", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-879", "protein_id": "0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-879", "rna_call_id": "16341", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/4cd4ed89-f6ce-47fa-aa61-aa8eb76f7f4d_0|orf_805-1170", "protein_id": "4cd4ed89-f6ce-47fa-aa61-aa8eb76f7f4d_0|orf_805-1170", "rna_call_id": "17019", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_786-1838", "protein_id": "a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_786-1838", "rna_call_id": "15463", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_376-1218", "protein_id": "aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_376-1218", "rna_call_id": "15888", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e1358c50-3281-4fc7-809d-e0ae8b86a358_0|orf_538-843", "protein_id": "e1358c50-3281-4fc7-809d-e0ae8b86a358_0|orf_538-843", "rna_call_id": "16837", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f5d24ee8-996c-41c4-a34f-e129dd82bf8d_0|orf_887-1150", "protein_id": "f5d24ee8-996c-41c4-a34f-e129dd82bf8d_0|orf_887-1150", "rna_call_id": "15563", "amino_acid_starts": [ 14 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6907197|orf_287-1129", "protein_id": "molecule/6907197|orf_287-1129", "rna_call_id": "1134", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0a848285-681d-4a27-97d1-9796bb47e682_0|orf_325-849", "protein_id": "0a848285-681d-4a27-97d1-9796bb47e682_0|orf_325-849", "rna_call_id": "5158", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/112e150a-feb2-4784-b35f-412ffad02cae_0|orf_161-673", "protein_id": "112e150a-feb2-4784-b35f-412ffad02cae_0|orf_161-673", "rna_call_id": "5079", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/12194af4-8eae-4d3c-8fa2-50b48608e494_0|orf_251-1285", "protein_id": "12194af4-8eae-4d3c-8fa2-50b48608e494_0|orf_251-1285", "rna_call_id": "5214", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2dac5728-f127-4d05-9c3a-11d628857868_0|orf_306-1340", "protein_id": "2dac5728-f127-4d05-9c3a-11d628857868_0|orf_306-1340", "rna_call_id": "5019", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1461", "protein_id": "3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1461", "rna_call_id": "4987", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790", "protein_id": "37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790", "rna_call_id": "4883", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/48f97ace-343d-4208-9704-0a2149edb570_0|orf_232-1266", "protein_id": "48f97ace-343d-4208-9704-0a2149edb570_0|orf_232-1266", "rna_call_id": "5245", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4ec5f01d-eafe-44de-8a55-5d3a4e429357_0|orf_204-1238", "protein_id": "4ec5f01d-eafe-44de-8a55-5d3a4e429357_0|orf_204-1238", "rna_call_id": "4794", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221", "protein_id": "5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221", "rna_call_id": "5086", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8dbb9d91-1e6d-4f25-bf04-8f143664e8d7_0|orf_8-1042", "protein_id": "8dbb9d91-1e6d-4f25-bf04-8f143664e8d7_0|orf_8-1042", "rna_call_id": "5153", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331", "protein_id": "91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331", "rna_call_id": "5264", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332", "protein_id": "9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332", "rna_call_id": "4779", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-1200", "protein_id": "b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-1200", "rna_call_id": "5255", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/dd0b47f8-937f-45cc-a1b1-cc4da226f8ea_0|orf_1-909", "protein_id": "dd0b47f8-937f-45cc-a1b1-cc4da226f8ea_0|orf_1-909", "rna_call_id": "5379", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e4ecf576-3295-4875-9179-29f14c43aaf5_0|orf_224-1258", "protein_id": "e4ecf576-3295-4875-9179-29f14c43aaf5_0|orf_224-1258", "rna_call_id": "5114", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2dac5728-f127-4d05-9c3a-11d628857868_0|orf_305-1339", "protein_id": "2dac5728-f127-4d05-9c3a-11d628857868_0|orf_305-1339", "rna_call_id": "17639", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1338", "protein_id": "3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1338", "rna_call_id": "17330", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790", "protein_id": "37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790", "rna_call_id": "16976", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221", "protein_id": "5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221", "rna_call_id": "18177", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331", "protein_id": "91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331", "rna_call_id": "18257", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332", "protein_id": "9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332", "rna_call_id": "16556", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-750", "protein_id": "b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-750", "rna_call_id": "18236", "amino_acid_starts": [ 14 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_780-1187", "protein_id": "06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_780-1187", "rna_call_id": "4331", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0d244a77-419b-4138-8c89-076c0942ae84_0|orf_296-1207", "protein_id": "0d244a77-419b-4138-8c89-076c0942ae84_0|orf_296-1207", "rna_call_id": "4094", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-1077", "protein_id": "0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-1077", "rna_call_id": "4147", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7369afa2-9471-4079-93f5-2ba142dd8f7f_0|orf_361-1533", "protein_id": "7369afa2-9471-4079-93f5-2ba142dd8f7f_0|orf_361-1533", "rna_call_id": "3975", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8bf6cc3a-5c83-458e-86b9-5fc5fbc90106_0|orf_172-1206", "protein_id": "8bf6cc3a-5c83-458e-86b9-5fc5fbc90106_0|orf_172-1206", "rna_call_id": "4102", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_790-1962", "protein_id": "a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_790-1962", "rna_call_id": "3861", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_375-1217", "protein_id": "aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_375-1217", "rna_call_id": "3983", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e9e00242-3724-4495-8ed1-b14d41779c87_0|orf_224-1258", "protein_id": "e9e00242-3724-4495-8ed1-b14d41779c87_0|orf_224-1258", "rna_call_id": "3941", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fc8654b9-cb4d-4ab2-8d0d-539e02c0dea2_0|orf_231-1265", "protein_id": "fc8654b9-cb4d-4ab2-8d0d-539e02c0dea2_0|orf_231-1265", "rna_call_id": "4187", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_777-1184", "protein_id": "06203731-0259-4680-a8d2-9d67d520f0f8_0|orf_777-1184", "rna_call_id": "17063", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-879", "protein_id": "0f807604-7525-44b1-b3ef-06ed10ca5137_0|orf_43-879", "rna_call_id": "16341", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/4cd4ed89-f6ce-47fa-aa61-aa8eb76f7f4d_0|orf_805-1170", "protein_id": "4cd4ed89-f6ce-47fa-aa61-aa8eb76f7f4d_0|orf_805-1170", "rna_call_id": "17019", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_786-1838", "protein_id": "a28e89c9-b4c6-4d7c-b28d-4a2793477bfb_0|orf_786-1838", "rna_call_id": "15463", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_376-1218", "protein_id": "aed0a134-405a-4b71-8c27-96b50ec574bc_0|orf_376-1218", "rna_call_id": "15888", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e1358c50-3281-4fc7-809d-e0ae8b86a358_0|orf_538-843", "protein_id": "e1358c50-3281-4fc7-809d-e0ae8b86a358_0|orf_538-843", "rna_call_id": "16837", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f5d24ee8-996c-41c4-a34f-e129dd82bf8d_0|orf_887-1150", "protein_id": "f5d24ee8-996c-41c4-a34f-e129dd82bf8d_0|orf_887-1150", "rna_call_id": "15563", "variant_amino_acid_start": 26 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6907197|orf_287-1129", "protein_id": "molecule/6907197|orf_287-1129", "rna_call_id": "1134", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0a848285-681d-4a27-97d1-9796bb47e682_0|orf_325-849", "protein_id": "0a848285-681d-4a27-97d1-9796bb47e682_0|orf_325-849", "rna_call_id": "5158", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/112e150a-feb2-4784-b35f-412ffad02cae_0|orf_161-673", "protein_id": "112e150a-feb2-4784-b35f-412ffad02cae_0|orf_161-673", "rna_call_id": "5079", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/12194af4-8eae-4d3c-8fa2-50b48608e494_0|orf_251-1285", "protein_id": "12194af4-8eae-4d3c-8fa2-50b48608e494_0|orf_251-1285", "rna_call_id": "5214", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2dac5728-f127-4d05-9c3a-11d628857868_0|orf_306-1340", "protein_id": "2dac5728-f127-4d05-9c3a-11d628857868_0|orf_306-1340", "rna_call_id": "5019", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1461", "protein_id": "3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1461", "rna_call_id": "4987", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790", "protein_id": "37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790", "rna_call_id": "4883", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/48f97ace-343d-4208-9704-0a2149edb570_0|orf_232-1266", "protein_id": "48f97ace-343d-4208-9704-0a2149edb570_0|orf_232-1266", "rna_call_id": "5245", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4ec5f01d-eafe-44de-8a55-5d3a4e429357_0|orf_204-1238", "protein_id": "4ec5f01d-eafe-44de-8a55-5d3a4e429357_0|orf_204-1238", "rna_call_id": "4794", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221", "protein_id": "5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221", "rna_call_id": "5086", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8dbb9d91-1e6d-4f25-bf04-8f143664e8d7_0|orf_8-1042", "protein_id": "8dbb9d91-1e6d-4f25-bf04-8f143664e8d7_0|orf_8-1042", "rna_call_id": "5153", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331", "protein_id": "91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331", "rna_call_id": "5264", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332", "protein_id": "9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332", "rna_call_id": "4779", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-1200", "protein_id": "b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-1200", "rna_call_id": "5255", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/dd0b47f8-937f-45cc-a1b1-cc4da226f8ea_0|orf_1-909", "protein_id": "dd0b47f8-937f-45cc-a1b1-cc4da226f8ea_0|orf_1-909", "rna_call_id": "5379", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e4ecf576-3295-4875-9179-29f14c43aaf5_0|orf_224-1258", "protein_id": "e4ecf576-3295-4875-9179-29f14c43aaf5_0|orf_224-1258", "rna_call_id": "5114", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2dac5728-f127-4d05-9c3a-11d628857868_0|orf_305-1339", "protein_id": "2dac5728-f127-4d05-9c3a-11d628857868_0|orf_305-1339", "rna_call_id": "17639", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1338", "protein_id": "3150f9ae-257d-4080-96d6-cf3b08b47d09_0|orf_289-1338", "rna_call_id": "17330", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790", "protein_id": "37253fad-b624-4af8-968c-eed7306a3ba6_0|orf_299-790", "rna_call_id": "16976", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4ec5f01d-eafe-44de-8a55-5d3a4e429357_0|orf_204-1238", "protein_id": "4ec5f01d-eafe-44de-8a55-5d3a4e429357_0|orf_204-1238", "rna_call_id": "16596", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221", "protein_id": "5785564a-1ffd-427a-bfdd-99a5421cd934_0|orf_187-1221", "rna_call_id": "18177", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331", "protein_id": "91a53f21-eeed-453f-80b7-0b482a9cb59d_0|orf_297-1331", "rna_call_id": "18257", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/92d51600-6ae5-4734-a471-3c1742a0ba03_0|orf_35-487", "protein_id": "92d51600-6ae5-4734-a471-3c1742a0ba03_0|orf_35-487", "rna_call_id": "18716", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332", "protein_id": "9f035a75-de12-4000-af8e-51231add6ba9_0|orf_298-1332", "rna_call_id": "16556", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b2a9c6c9-3011-4a08-98c8-70abe37fae0d_0|orf_248-427", "protein_id": "b2a9c6c9-3011-4a08-98c8-70abe37fae0d_0|orf_248-427", "rna_call_id": "18837", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-750", "protein_id": "b6572119-75e2-4f56-b040-ec1e27591b79_0|orf_166-750", "rna_call_id": "18236", "variant_amino_acid_start": 26 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c92b5252-d9f9-4c99-9531-b7ac20ca87f0_0|orf_300-812", "protein_id": "c92b5252-d9f9-4c99-9531-b7ac20ca87f0_0|orf_300-812", "rna_call_id": "18576", "variant_amino_acid_start": 26 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 16 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 16 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 4 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 38 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 38 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 44, "alt_reads": 0, "total_reads": 44, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 171, "alt_reads": 0, "total_reads": 171, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 92, "alt_reads": 10, "total_reads": 102, "vaf": 0.098, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 21, "alt_reads": 0, "total_reads": 21, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 93, "alt_reads": 9, "total_reads": 102, "vaf": 0.0882, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 11, "alt_reads": 0, "total_reads": 11, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 32, "alt_reads": 0, "total_reads": 32, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 14, "alt_reads": 0, "total_reads": 14, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 53, "alt_reads": 4, "total_reads": 57, "vaf": 0.0702, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 177, "alt_reads": 19, "total_reads": 196, "vaf": 0.0969, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 7, "alt_reads": 1, "total_reads": 8, "vaf": 0.125, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 122, "alt_reads": 0, "total_reads": 122, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 144, "alt_reads": 16, "total_reads": 160, "vaf": 0.1, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 209, "alt_reads": 38, "total_reads": 248, "vaf": 0.1532, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 260, "alt_reads": 0, "total_reads": 260, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 38, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 16, "category": "multiple", "sid_alt_reads": 16, "exacto_raw_rnas": 16 }, "T2-ONT": { "max_alt_reads": 38, "category": "multiple", "sid_alt_reads": 38, "exacto_raw_rnas": 38 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 4, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 4 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "ASPM-chr1-197102716", "gene": "ASPM", "chrom": "chr1", "pos": 197102716, "ref": "C", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Gly2179Arg", "consequence": "missense_variant", "vaccines": [ "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "ASPM-chr1-197102716.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 18, "sequence": "REKYLTILKAVKVLQASFRRVRVRRTLRKMQ", "scoring_region": { "sequence": "REKYLTILKAVKVLQASFRRVRVRRTLRKMQ", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1b0e3749-fdf8-4809-88fe-178b2b5871d5_0|orf_205-1644", "protein_id": "1b0e3749-fdf8-4809-88fe-178b2b5871d5_0|orf_205-1644", "rna_call_id": "6145", "amino_acid_starts": [ 45 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "protein_id": "1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "rna_call_id": "6651", "amino_acid_starts": [ 45 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_19-777", "protein_id": "662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_19-777", "rna_call_id": "7542", "amino_acid_starts": [ 204 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-783", "protein_id": "860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-783", "rna_call_id": "6398", "amino_acid_starts": [ 45 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "protein_id": "bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "rna_call_id": "6777", "amino_acid_starts": [ 35 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ec98a2d8-5e76-4d09-8183-cdbcb7130fb3_0|orf_8-580", "protein_id": "ec98a2d8-5e76-4d09-8183-cdbcb7130fb3_0|orf_8-580", "rna_call_id": "6823", "amino_acid_starts": [ 35 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/01daf63f-a66f-442a-94a0-fe0ae435057f_0|orf_187-477", "protein_id": "01daf63f-a66f-442a-94a0-fe0ae435057f_0|orf_187-477", "rna_call_id": "24624", "amino_acid_starts": [ 45 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/14b4beff-67bf-4914-9f74-741cb0920eac_0|orf_54-296", "protein_id": "14b4beff-67bf-4914-9f74-741cb0920eac_0|orf_54-296", "rna_call_id": "20530", "amino_acid_starts": [ 3 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "protein_id": "1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "rna_call_id": "21301", "amino_acid_starts": [ 45 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/43db199b-ff5b-450e-97d0-f069c84954ff_0|orf_2-1588", "protein_id": "43db199b-ff5b-450e-97d0-f069c84954ff_0|orf_2-1588", "rna_call_id": "21799", "amino_acid_starts": [ 433 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_252-779", "protein_id": "662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_252-779", "rna_call_id": "24714", "amino_acid_starts": [ 127 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6e5d1604-7e34-48cb-ae9b-a80a93f8aafb_0|orf_40-837", "protein_id": "6e5d1604-7e34-48cb-ae9b-a80a93f8aafb_0|orf_40-837", "rna_call_id": "20632", "amino_acid_starts": [ 3 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-546", "protein_id": "860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-546", "rna_call_id": "21225", "amino_acid_starts": [ 45 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8f0bb718-96d8-40fa-a5d5-6eea5b98eb27_0|orf_175-459", "protein_id": "8f0bb718-96d8-40fa-a5d5-6eea5b98eb27_0|orf_175-459", "rna_call_id": "23525", "amino_acid_starts": [ 45 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "protein_id": "bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "rna_call_id": "22041", "amino_acid_starts": [ 35 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dae6a102-47c7-4866-9483-0a5b17802734_0|orf_237-572", "protein_id": "dae6a102-47c7-4866-9483-0a5b17802734_0|orf_237-572", "rna_call_id": "22665", "amino_acid_starts": [ 45 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f8e3c3bc-826d-431d-9fb2-1b7db9d1fe94_0|orf_174-647", "protein_id": "f8e3c3bc-826d-431d-9fb2-1b7db9d1fe94_0|orf_174-647", "rna_call_id": "19855", "amino_acid_starts": [ 45 ] } ] }, { "peptide_id": "ASPM-chr1-197102716.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "RRVRVRRTLR", "scoring_region": { "sequence": "RRVRVRRTLR", "start": 0, "end": 10, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1b0e3749-fdf8-4809-88fe-178b2b5871d5_0|orf_205-1644", "protein_id": "1b0e3749-fdf8-4809-88fe-178b2b5871d5_0|orf_205-1644", "rna_call_id": "6145", "amino_acid_starts": [ 63 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "protein_id": "1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "rna_call_id": "6651", "amino_acid_starts": [ 63 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_19-777", "protein_id": "662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_19-777", "rna_call_id": "7542", "amino_acid_starts": [ 222 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-783", "protein_id": "860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-783", "rna_call_id": "6398", "amino_acid_starts": [ 63 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "protein_id": "bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "rna_call_id": "6777", "amino_acid_starts": [ 53 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ec98a2d8-5e76-4d09-8183-cdbcb7130fb3_0|orf_8-580", "protein_id": "ec98a2d8-5e76-4d09-8183-cdbcb7130fb3_0|orf_8-580", "rna_call_id": "6823", "amino_acid_starts": [ 53 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/01daf63f-a66f-442a-94a0-fe0ae435057f_0|orf_187-477", "protein_id": "01daf63f-a66f-442a-94a0-fe0ae435057f_0|orf_187-477", "rna_call_id": "24624", "amino_acid_starts": [ 63 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/14b4beff-67bf-4914-9f74-741cb0920eac_0|orf_54-296", "protein_id": "14b4beff-67bf-4914-9f74-741cb0920eac_0|orf_54-296", "rna_call_id": "20530", "amino_acid_starts": [ 21 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "protein_id": "1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "rna_call_id": "21301", "amino_acid_starts": [ 63 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/43db199b-ff5b-450e-97d0-f069c84954ff_0|orf_2-1588", "protein_id": "43db199b-ff5b-450e-97d0-f069c84954ff_0|orf_2-1588", "rna_call_id": "21799", "amino_acid_starts": [ 451 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_252-779", "protein_id": "662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_252-779", "rna_call_id": "24714", "amino_acid_starts": [ 145 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6e5d1604-7e34-48cb-ae9b-a80a93f8aafb_0|orf_40-837", "protein_id": "6e5d1604-7e34-48cb-ae9b-a80a93f8aafb_0|orf_40-837", "rna_call_id": "20632", "amino_acid_starts": [ 21 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-546", "protein_id": "860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-546", "rna_call_id": "21225", "amino_acid_starts": [ 63 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8f0bb718-96d8-40fa-a5d5-6eea5b98eb27_0|orf_175-459", "protein_id": "8f0bb718-96d8-40fa-a5d5-6eea5b98eb27_0|orf_175-459", "rna_call_id": "23525", "amino_acid_starts": [ 63 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "protein_id": "bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "rna_call_id": "22041", "amino_acid_starts": [ 53 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dae6a102-47c7-4866-9483-0a5b17802734_0|orf_237-572", "protein_id": "dae6a102-47c7-4866-9483-0a5b17802734_0|orf_237-572", "rna_call_id": "22665", "amino_acid_starts": [ 63 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f8e3c3bc-826d-431d-9fb2-1b7db9d1fe94_0|orf_174-647", "protein_id": "f8e3c3bc-826d-431d-9fb2-1b7db9d1fe94_0|orf_174-647", "rna_call_id": "19855", "amino_acid_starts": [ 63 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1b0e3749-fdf8-4809-88fe-178b2b5871d5_0|orf_205-1644", "protein_id": "1b0e3749-fdf8-4809-88fe-178b2b5871d5_0|orf_205-1644", "rna_call_id": "6145", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "protein_id": "1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "rna_call_id": "6651", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_19-777", "protein_id": "662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_19-777", "rna_call_id": "7542", "variant_amino_acid_start": 223 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-783", "protein_id": "860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-783", "rna_call_id": "6398", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "protein_id": "bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "rna_call_id": "6777", "variant_amino_acid_start": 54 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ec98a2d8-5e76-4d09-8183-cdbcb7130fb3_0|orf_8-580", "protein_id": "ec98a2d8-5e76-4d09-8183-cdbcb7130fb3_0|orf_8-580", "rna_call_id": "6823", "variant_amino_acid_start": 54 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/01daf63f-a66f-442a-94a0-fe0ae435057f_0|orf_187-477", "protein_id": "01daf63f-a66f-442a-94a0-fe0ae435057f_0|orf_187-477", "rna_call_id": "24624", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/14b4beff-67bf-4914-9f74-741cb0920eac_0|orf_54-296", "protein_id": "14b4beff-67bf-4914-9f74-741cb0920eac_0|orf_54-296", "rna_call_id": "20530", "variant_amino_acid_start": 22 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "protein_id": "1de052d2-2814-49b6-b299-19bf341a12dd_0|orf_115-717", "rna_call_id": "21301", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/302843fb-30db-4851-be27-c37383915c5e_0|orf_237-452", "protein_id": "302843fb-30db-4851-be27-c37383915c5e_0|orf_237-452", "rna_call_id": "22550", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/43db199b-ff5b-450e-97d0-f069c84954ff_0|orf_2-1588", "protein_id": "43db199b-ff5b-450e-97d0-f069c84954ff_0|orf_2-1588", "rna_call_id": "21799", "variant_amino_acid_start": 452 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5885e529-e427-4cc0-b9f9-44d543d5c25f_0|orf_197-394", "protein_id": "5885e529-e427-4cc0-b9f9-44d543d5c25f_0|orf_197-394", "rna_call_id": "23459", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_252-779", "protein_id": "662e0cee-e107-4974-87dd-66dfb218c59f_0|orf_252-779", "rna_call_id": "24714", "variant_amino_acid_start": 146 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6e5d1604-7e34-48cb-ae9b-a80a93f8aafb_0|orf_40-837", "protein_id": "6e5d1604-7e34-48cb-ae9b-a80a93f8aafb_0|orf_40-837", "rna_call_id": "20632", "variant_amino_acid_start": 22 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/76034dbd-aa03-4bb6-adcd-38d1f6940dad_0|orf_237-464", "protein_id": "76034dbd-aa03-4bb6-adcd-38d1f6940dad_0|orf_237-464", "rna_call_id": "25327", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-546", "protein_id": "860e2eed-bf1d-41d8-b5a7-c4747bcd7356_0|orf_181-546", "rna_call_id": "21225", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8f0bb718-96d8-40fa-a5d5-6eea5b98eb27_0|orf_175-459", "protein_id": "8f0bb718-96d8-40fa-a5d5-6eea5b98eb27_0|orf_175-459", "rna_call_id": "23525", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/92d89611-3919-4561-90a0-0dadf02dc08d_0|orf_10-537", "protein_id": "92d89611-3919-4561-90a0-0dadf02dc08d_0|orf_10-537", "rna_call_id": "23367", "variant_amino_acid_start": 146 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/995b3b39-0c62-4078-b2ee-02429eb52d19_0|orf_66-602", "protein_id": "995b3b39-0c62-4078-b2ee-02429eb52d19_0|orf_66-602", "rna_call_id": "24647", "variant_amino_acid_start": 146 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ad4c183b-5199-4bdd-91d7-3c4dc3095e9f_1|orf_182-445", "protein_id": "ad4c183b-5199-4bdd-91d7-3c4dc3095e9f_1|orf_182-445", "rna_call_id": "24526", "variant_amino_acid_start": 54 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b84797a5-6a31-4727-b354-e179e6810a68_0|orf_184-420", "protein_id": "b84797a5-6a31-4727-b354-e179e6810a68_0|orf_184-420", "rna_call_id": "24931", "variant_amino_acid_start": 77 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "protein_id": "bf77d5df-5c6c-4be8-baa1-6b7d62c28045_0|orf_11-583", "rna_call_id": "22041", "variant_amino_acid_start": 54 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/cb4d1fc4-63b3-4752-bdf8-f8891957cba5_0|orf_285-425", "protein_id": "cb4d1fc4-63b3-4752-bdf8-f8891957cba5_0|orf_285-425", "rna_call_id": "25224", "variant_amino_acid_start": 40 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d5eae861-fad9-481c-b143-0be5976dc79c_0|orf_234-518", "protein_id": "d5eae861-fad9-481c-b143-0be5976dc79c_0|orf_234-518", "rna_call_id": "22928", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dae6a102-47c7-4866-9483-0a5b17802734_0|orf_237-572", "protein_id": "dae6a102-47c7-4866-9483-0a5b17802734_0|orf_237-572", "rna_call_id": "22665", "variant_amino_acid_start": 64 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f8e3c3bc-826d-431d-9fb2-1b7db9d1fe94_0|orf_174-647", "protein_id": "f8e3c3bc-826d-431d-9fb2-1b7db9d1fe94_0|orf_174-647", "rna_call_id": "19855", "variant_amino_acid_start": 64 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 2 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 72 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 76 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 1 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 317, "alt_reads": 0, "total_reads": 317, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 207, "alt_reads": 0, "total_reads": 207, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 304, "alt_reads": 15, "total_reads": 321, "vaf": 0.0467, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 27, "alt_reads": 0, "total_reads": 27, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 301, "alt_reads": 12, "total_reads": 314, "vaf": 0.0382, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 28, "alt_reads": 1, "total_reads": 30, "vaf": 0.0333, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 55, "alt_reads": 3, "total_reads": 59, "vaf": 0.0508, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 28, "alt_reads": 1, "total_reads": 30, "vaf": 0.0333, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 12, "alt_reads": 2, "total_reads": 14, "vaf": 0.1429, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 105, "alt_reads": 9, "total_reads": 114, "vaf": 0.0789, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 2, "alt_reads": 2, "total_reads": 4, "vaf": 0.5, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 45, "alt_reads": 0, "total_reads": 45, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 55, "alt_reads": 1, "total_reads": 57, "vaf": 0.0175, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 595, "alt_reads": 92, "total_reads": 687, "vaf": 0.1339, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 267, "alt_reads": 1, "total_reads": 268, "vaf": 0.0037, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 92, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T2-ONT": { "max_alt_reads": 92, "category": "multiple", "sid_alt_reads": 92, "exacto_raw_rnas": 76 }, "T3-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T1-PacBio": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 2 }, "T2-ILMN": { "max_alt_reads": 3, "category": "multiple", "sid_alt_reads": 3, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "DYNC1H1-chr14-101980529", "gene": "DYNC1H1", "chrom": "chr14", "pos": 101980529, "ref": "G", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Val314Ile", "consequence": "missense_variant", "vaccines": [ "CeGaT", "JLF V2", "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "DYNC1H1-chr14-101980529.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 11, "sequence": "VLLTLDILKHGKRFHATISFDTDTGLKQAL", "scoring_region": { "sequence": "VLLTLDILKHGKRFHATISFDTDTGLKQAL", "start": 0, "end": 30, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/4727|orf_121-1152", "protein_id": "4727|orf_121-1152", "rna_call_id": "42355", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "protein_id": "1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "rna_call_id": "28021", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "protein_id": "b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "rna_call_id": "27935", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "protein_id": "00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "rna_call_id": "97432", "amino_acid_starts": [ 120 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "protein_id": "09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "rna_call_id": "97472", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "protein_id": "0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "rna_call_id": "96597", "amino_acid_starts": [ 172 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "protein_id": "1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "rna_call_id": "97618", "amino_acid_starts": [ 172 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "protein_id": "2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "rna_call_id": "93691", "amino_acid_starts": [ 172 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "protein_id": "3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "rna_call_id": "90616", "amino_acid_starts": [ 124 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "protein_id": "3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "rna_call_id": "96640", "amino_acid_starts": [ 298 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "protein_id": "3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "rna_call_id": "90903", "amino_acid_starts": [ 296 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "protein_id": "41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "rna_call_id": "97793", "amino_acid_starts": [ 120 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "protein_id": "5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "rna_call_id": "97800", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "protein_id": "5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "rna_call_id": "94022", "amino_acid_starts": [ 119 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "protein_id": "64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "rna_call_id": "97181", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "protein_id": "65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "rna_call_id": "95834", "amino_acid_starts": [ 232 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "protein_id": "690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "rna_call_id": "97092", "amino_acid_starts": [ 298 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "protein_id": "706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "rna_call_id": "96002", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "protein_id": "756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "rna_call_id": "94839", "amino_acid_starts": [ 275 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "protein_id": "79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "rna_call_id": "95989", "amino_acid_starts": [ 172 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "protein_id": "7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "rna_call_id": "94363", "amino_acid_starts": [ 172 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "protein_id": "924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "rna_call_id": "95351", "amino_acid_starts": [ 172 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "protein_id": "9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "rna_call_id": "92747", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "protein_id": "a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "rna_call_id": "91260", "amino_acid_starts": [ 142 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "protein_id": "c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "rna_call_id": "98154", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "protein_id": "e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "rna_call_id": "98084", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "protein_id": "efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "rna_call_id": "95114", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "protein_id": "f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "rna_call_id": "92815", "amino_acid_starts": [ 297 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "protein_id": "f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "rna_call_id": "90628", "amino_acid_starts": [ 86 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "protein_id": "f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "rna_call_id": "92206", "amino_acid_starts": [ 107 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "protein_id": "fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "rna_call_id": "97162", "amino_acid_starts": [ 120 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4502938|orf_120-1322", "protein_id": "molecule/4502938|orf_120-1322", "rna_call_id": "7522", "amino_acid_starts": [ 297 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6406178|orf_91-1254", "protein_id": "molecule/6406178|orf_91-1254", "rna_call_id": "7638", "amino_acid_starts": [ 297 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7964253|orf_118-1281", "protein_id": "molecule/7964253|orf_118-1281", "rna_call_id": "7601", "amino_acid_starts": [ 297 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10653919|orf_594-1265", "protein_id": "molecule/10653919|orf_594-1265", "rna_call_id": "12692", "amino_acid_starts": [ 120 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2481063|orf_649-1314", "protein_id": "molecule/2481063|orf_649-1314", "rna_call_id": "11999", "amino_acid_starts": [ 120 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2754995|orf_467-1114", "protein_id": "molecule/2754995|orf_467-1114", "rna_call_id": "12563", "amino_acid_starts": [ 172 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2924331|orf_762-1142", "protein_id": "molecule/2924331|orf_762-1142", "rna_call_id": "12052", "amino_acid_starts": [ 83 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3104854|orf_120-1373", "protein_id": "molecule/3104854|orf_120-1373", "rna_call_id": "12055", "amino_acid_starts": [ 297 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4600551|orf_120-1361", "protein_id": "molecule/4600551|orf_120-1361", "rna_call_id": "12118", "amino_acid_starts": [ 297 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6650045|orf_120-1211", "protein_id": "molecule/6650045|orf_120-1211", "rna_call_id": "12197", "amino_acid_starts": [ 297 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7269789|orf_649-1212", "protein_id": "molecule/7269789|orf_649-1212", "rna_call_id": "12214", "amino_acid_starts": [ 120 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7302991|orf_119-1360", "protein_id": "molecule/7302991|orf_119-1360", "rna_call_id": "12217", "amino_acid_starts": [ 297 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8365822|orf_102-1403", "protein_id": "molecule/8365822|orf_102-1403", "rna_call_id": "12496", "amino_acid_starts": [ 297 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8581101|orf_31-1272", "protein_id": "molecule/8581101|orf_31-1272", "rna_call_id": "12699", "amino_acid_starts": [ 297 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/871958|orf_648-1319", "protein_id": "molecule/871958|orf_648-1319", "rna_call_id": "12420", "amino_acid_starts": [ 120 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9754436|orf_141-1166", "protein_id": "molecule/9754436|orf_141-1166", "rna_call_id": "12636", "amino_acid_starts": [ 275 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/2520|orf_503-1393", "protein_id": "2520|orf_503-1393", "rna_call_id": "14841", "amino_acid_starts": [ 206 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "protein_id": "eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "rna_call_id": "35499", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "35370", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "protein_id": "02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "rna_call_id": "105627", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "protein_id": "0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "rna_call_id": "107185", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "protein_id": "10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "rna_call_id": "103470", "amino_acid_starts": [ 172 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "protein_id": "118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "rna_call_id": "109719", "amino_acid_starts": [ 120 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "protein_id": "1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "rna_call_id": "104652", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "protein_id": "1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "rna_call_id": "108937", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "protein_id": "256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "rna_call_id": "104746", "amino_acid_starts": [ 120 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "protein_id": "2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "rna_call_id": "107892", "amino_acid_starts": [ 143 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "protein_id": "30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "rna_call_id": "103528", "amino_acid_starts": [ 171 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "protein_id": "4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "rna_call_id": "107168", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "protein_id": "706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "rna_call_id": "108337", "amino_acid_starts": [ 296 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "protein_id": "8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "rna_call_id": "106632", "amino_acid_starts": [ 120 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "protein_id": "91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "rna_call_id": "103197", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "protein_id": "a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "rna_call_id": "108859", "amino_acid_starts": [ 172 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "protein_id": "a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "rna_call_id": "104713", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "protein_id": "a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "rna_call_id": "107155", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "protein_id": "aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "rna_call_id": "110087", "amino_acid_starts": [ 86 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "protein_id": "b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "rna_call_id": "108682", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "protein_id": "c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "rna_call_id": "106966", "amino_acid_starts": [ 107 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "protein_id": "c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "rna_call_id": "105645", "amino_acid_starts": [ 172 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "protein_id": "dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "rna_call_id": "109516", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "106016", "amino_acid_starts": [ 297 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "protein_id": "f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "rna_call_id": "106977", "amino_acid_starts": [ 297 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "protein_id": "ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "rna_call_id": "121979", "amino_acid_starts": [ 77 ] } ] }, { "peptide_id": "DYNC1H1-chr14-101980529.peptide-2", "experiments": [ { "additional_testing": "", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15)", "peptide_id": "P10-3.DYNC1H1", "pool": "S3", "result": "Negative", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "KRFHATISF", "scoring_region": { "sequence": "KRFHATISF", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/4727|orf_121-1152", "protein_id": "4727|orf_121-1152", "rna_call_id": "42355", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "protein_id": "1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "rna_call_id": "28021", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "protein_id": "b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "rna_call_id": "27935", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "protein_id": "00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "rna_call_id": "97432", "amino_acid_starts": [ 131 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "protein_id": "09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "rna_call_id": "97472", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "protein_id": "0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "rna_call_id": "96597", "amino_acid_starts": [ 183 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "protein_id": "1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "rna_call_id": "97618", "amino_acid_starts": [ 183 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1e68f3b9-b9cb-491a-b618-6ccf1a1320e3_0|orf_123-1112", "protein_id": "1e68f3b9-b9cb-491a-b618-6ccf1a1320e3_0|orf_123-1112", "rna_call_id": "96719", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "protein_id": "2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "rna_call_id": "93691", "amino_acid_starts": [ 183 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/25a8f774-4f25-490c-b04b-a91934728e4d_0|orf_699-1427", "protein_id": "25a8f774-4f25-490c-b04b-a91934728e4d_0|orf_699-1427", "rna_call_id": "95594", "amino_acid_starts": [ 117 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2a0f27b5-e4be-4f3a-98aa-6181223dc077_0|orf_655-1110", "protein_id": "2a0f27b5-e4be-4f3a-98aa-6181223dc077_0|orf_655-1110", "rna_call_id": "96945", "amino_acid_starts": [ 131 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "protein_id": "3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "rna_call_id": "90616", "amino_acid_starts": [ 135 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "protein_id": "3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "rna_call_id": "96640", "amino_acid_starts": [ 309 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "protein_id": "3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "rna_call_id": "90903", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "protein_id": "41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "rna_call_id": "97793", "amino_acid_starts": [ 131 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5056a6c0-3dcc-4c39-9dc3-24e0a1b4da51_0|orf_648-1391", "protein_id": "5056a6c0-3dcc-4c39-9dc3-24e0a1b4da51_0|orf_648-1391", "rna_call_id": "98046", "amino_acid_starts": [ 131 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "protein_id": "5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "rna_call_id": "97800", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "protein_id": "5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "rna_call_id": "94022", "amino_acid_starts": [ 130 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "protein_id": "64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "rna_call_id": "97181", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "protein_id": "65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "rna_call_id": "95834", "amino_acid_starts": [ 243 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "protein_id": "690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "rna_call_id": "97092", "amino_acid_starts": [ 309 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "protein_id": "706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "rna_call_id": "96002", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "protein_id": "756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "rna_call_id": "94839", "amino_acid_starts": [ 286 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "protein_id": "79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "rna_call_id": "95989", "amino_acid_starts": [ 183 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "protein_id": "7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "rna_call_id": "94363", "amino_acid_starts": [ 183 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "protein_id": "924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "rna_call_id": "95351", "amino_acid_starts": [ 183 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "protein_id": "9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "rna_call_id": "92747", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "protein_id": "a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "rna_call_id": "91260", "amino_acid_starts": [ 153 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1165", "protein_id": "b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1165", "rna_call_id": "91966", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "protein_id": "c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "rna_call_id": "98154", "amino_acid_starts": [ 200 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "protein_id": "e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "rna_call_id": "98084", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "protein_id": "efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "rna_call_id": "95114", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "protein_id": "f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "rna_call_id": "92815", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "protein_id": "f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "rna_call_id": "90628", "amino_acid_starts": [ 97 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "protein_id": "f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "rna_call_id": "92206", "amino_acid_starts": [ 118 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "protein_id": "fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "rna_call_id": "97162", "amino_acid_starts": [ 131 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4502938|orf_120-1322", "protein_id": "molecule/4502938|orf_120-1322", "rna_call_id": "7522", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6406178|orf_91-1254", "protein_id": "molecule/6406178|orf_91-1254", "rna_call_id": "7638", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7964253|orf_118-1281", "protein_id": "molecule/7964253|orf_118-1281", "rna_call_id": "7601", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10653919|orf_594-1265", "protein_id": "molecule/10653919|orf_594-1265", "rna_call_id": "12692", "amino_acid_starts": [ 131 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2481063|orf_649-1314", "protein_id": "molecule/2481063|orf_649-1314", "rna_call_id": "11999", "amino_acid_starts": [ 131 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2754995|orf_467-1114", "protein_id": "molecule/2754995|orf_467-1114", "rna_call_id": "12563", "amino_acid_starts": [ 183 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2924331|orf_762-1142", "protein_id": "molecule/2924331|orf_762-1142", "rna_call_id": "12052", "amino_acid_starts": [ 94 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3104854|orf_120-1373", "protein_id": "molecule/3104854|orf_120-1373", "rna_call_id": "12055", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4600551|orf_120-1361", "protein_id": "molecule/4600551|orf_120-1361", "rna_call_id": "12118", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/591851|orf_92-1078", "protein_id": "molecule/591851|orf_92-1078", "rna_call_id": "12546", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6650045|orf_120-1211", "protein_id": "molecule/6650045|orf_120-1211", "rna_call_id": "12197", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7144507|orf_63-1019", "protein_id": "molecule/7144507|orf_63-1019", "rna_call_id": "12694", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7269789|orf_649-1212", "protein_id": "molecule/7269789|orf_649-1212", "rna_call_id": "12214", "amino_acid_starts": [ 131 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7302991|orf_119-1360", "protein_id": "molecule/7302991|orf_119-1360", "rna_call_id": "12217", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8365822|orf_102-1403", "protein_id": "molecule/8365822|orf_102-1403", "rna_call_id": "12496", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8581101|orf_31-1272", "protein_id": "molecule/8581101|orf_31-1272", "rna_call_id": "12699", "amino_acid_starts": [ 308 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/871958|orf_648-1319", "protein_id": "molecule/871958|orf_648-1319", "rna_call_id": "12420", "amino_acid_starts": [ 131 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9754436|orf_141-1166", "protein_id": "molecule/9754436|orf_141-1166", "rna_call_id": "12636", "amino_acid_starts": [ 286 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/2520|orf_503-1393", "protein_id": "2520|orf_503-1393", "rna_call_id": "14841", "amino_acid_starts": [ 217 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "protein_id": "eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "rna_call_id": "35499", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "35370", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "protein_id": "02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "rna_call_id": "105627", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "protein_id": "0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "rna_call_id": "107185", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "protein_id": "10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "rna_call_id": "103470", "amino_acid_starts": [ 183 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "protein_id": "118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "rna_call_id": "109719", "amino_acid_starts": [ 131 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "protein_id": "1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "rna_call_id": "104652", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "protein_id": "1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "rna_call_id": "108937", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "protein_id": "256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "rna_call_id": "104746", "amino_acid_starts": [ 131 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "protein_id": "2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "rna_call_id": "107892", "amino_acid_starts": [ 154 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "protein_id": "30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "rna_call_id": "103528", "amino_acid_starts": [ 182 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "protein_id": "4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "rna_call_id": "107168", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "protein_id": "706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "rna_call_id": "108337", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "protein_id": "8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "rna_call_id": "106632", "amino_acid_starts": [ 131 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "protein_id": "91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "rna_call_id": "103197", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "protein_id": "a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "rna_call_id": "108859", "amino_acid_starts": [ 183 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "protein_id": "a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "rna_call_id": "104713", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "protein_id": "a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "rna_call_id": "107155", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "protein_id": "aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "rna_call_id": "110087", "amino_acid_starts": [ 97 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/af499934-3f90-438e-b381-ea7ba34bd35b_0|orf_141-1133", "protein_id": "af499934-3f90-438e-b381-ea7ba34bd35b_0|orf_141-1133", "rna_call_id": "106510", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "protein_id": "b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "rna_call_id": "108682", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "protein_id": "c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "rna_call_id": "106966", "amino_acid_starts": [ 118 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "protein_id": "c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "rna_call_id": "105645", "amino_acid_starts": [ 183 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "protein_id": "dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "rna_call_id": "109516", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "106016", "amino_acid_starts": [ 308 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "protein_id": "f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "rna_call_id": "106977", "amino_acid_starts": [ 308 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "protein_id": "ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "rna_call_id": "121979", "amino_acid_starts": [ 88 ] } ] }, { "peptide_id": "DYNC1H1-chr14-101980529.peptide-3", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038R.MT.52.DYNC1H1", "pool": "L2", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038R.MT.52.DYNC1H1.2", "pool": "Pool 1", "result": "Positive (Weak)", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038R.MT.52.DYNC1H1.2", "pool": "", "result": "Positive (Weak)", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "Sent to MUSC for expansion", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.52.DYNC1H1.2", "pool": "NA", "result": "Positive (Strong)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V3", "JLF V2" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 1, "sequence": "GKRFHATISFDTDTGLKQALETKK", "scoring_region": { "sequence": "GKRFHATISFDTDTGLKQALET", "start": 0, "end": 22, "terminal_tags": [ { "terminus": "C", "start": 22, "end": 24, "sequence": "KK" } ] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/4727|orf_121-1152", "protein_id": "4727|orf_121-1152", "rna_call_id": "42355", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "protein_id": "1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "rna_call_id": "28021", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "protein_id": "b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "rna_call_id": "27935", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "protein_id": "00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "rna_call_id": "97432", "amino_acid_starts": [ 130 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "protein_id": "09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "rna_call_id": "97472", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "protein_id": "0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "rna_call_id": "96597", "amino_acid_starts": [ 182 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "protein_id": "1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "rna_call_id": "97618", "amino_acid_starts": [ 182 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "protein_id": "2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "rna_call_id": "93691", "amino_acid_starts": [ 182 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/25a8f774-4f25-490c-b04b-a91934728e4d_0|orf_699-1427", "protein_id": "25a8f774-4f25-490c-b04b-a91934728e4d_0|orf_699-1427", "rna_call_id": "95594", "amino_acid_starts": [ 116 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "protein_id": "3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "rna_call_id": "90616", "amino_acid_starts": [ 134 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "protein_id": "3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "rna_call_id": "96640", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "protein_id": "3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "rna_call_id": "90903", "amino_acid_starts": [ 306 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "protein_id": "41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "rna_call_id": "97793", "amino_acid_starts": [ 130 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "protein_id": "5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "rna_call_id": "97800", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "protein_id": "5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "rna_call_id": "94022", "amino_acid_starts": [ 129 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "protein_id": "64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "rna_call_id": "97181", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "protein_id": "65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "rna_call_id": "95834", "amino_acid_starts": [ 242 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "protein_id": "690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "rna_call_id": "97092", "amino_acid_starts": [ 308 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "protein_id": "706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "rna_call_id": "96002", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "protein_id": "756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "rna_call_id": "94839", "amino_acid_starts": [ 285 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "protein_id": "79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "rna_call_id": "95989", "amino_acid_starts": [ 182 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "protein_id": "7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "rna_call_id": "94363", "amino_acid_starts": [ 182 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "protein_id": "924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "rna_call_id": "95351", "amino_acid_starts": [ 182 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "protein_id": "9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "rna_call_id": "92747", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "protein_id": "a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "rna_call_id": "91260", "amino_acid_starts": [ 152 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "protein_id": "c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "rna_call_id": "98154", "amino_acid_starts": [ 199 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "protein_id": "e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "rna_call_id": "98084", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "protein_id": "efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "rna_call_id": "95114", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "protein_id": "f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "rna_call_id": "92815", "amino_acid_starts": [ 307 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "protein_id": "f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "rna_call_id": "90628", "amino_acid_starts": [ 96 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "protein_id": "f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "rna_call_id": "92206", "amino_acid_starts": [ 117 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "protein_id": "fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "rna_call_id": "97162", "amino_acid_starts": [ 130 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4502938|orf_120-1322", "protein_id": "molecule/4502938|orf_120-1322", "rna_call_id": "7522", "amino_acid_starts": [ 307 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6406178|orf_91-1254", "protein_id": "molecule/6406178|orf_91-1254", "rna_call_id": "7638", "amino_acid_starts": [ 307 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7964253|orf_118-1281", "protein_id": "molecule/7964253|orf_118-1281", "rna_call_id": "7601", "amino_acid_starts": [ 307 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10653919|orf_594-1265", "protein_id": "molecule/10653919|orf_594-1265", "rna_call_id": "12692", "amino_acid_starts": [ 130 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2481063|orf_649-1314", "protein_id": "molecule/2481063|orf_649-1314", "rna_call_id": "11999", "amino_acid_starts": [ 130 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2754995|orf_467-1114", "protein_id": "molecule/2754995|orf_467-1114", "rna_call_id": "12563", "amino_acid_starts": [ 182 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2924331|orf_762-1142", "protein_id": "molecule/2924331|orf_762-1142", "rna_call_id": "12052", "amino_acid_starts": [ 93 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3104854|orf_120-1373", "protein_id": "molecule/3104854|orf_120-1373", "rna_call_id": "12055", "amino_acid_starts": [ 307 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4600551|orf_120-1361", "protein_id": "molecule/4600551|orf_120-1361", "rna_call_id": "12118", "amino_acid_starts": [ 307 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6650045|orf_120-1211", "protein_id": "molecule/6650045|orf_120-1211", "rna_call_id": "12197", "amino_acid_starts": [ 307 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7269789|orf_649-1212", "protein_id": "molecule/7269789|orf_649-1212", "rna_call_id": "12214", "amino_acid_starts": [ 130 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7302991|orf_119-1360", "protein_id": "molecule/7302991|orf_119-1360", "rna_call_id": "12217", "amino_acid_starts": [ 307 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8365822|orf_102-1403", "protein_id": "molecule/8365822|orf_102-1403", "rna_call_id": "12496", "amino_acid_starts": [ 307 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8581101|orf_31-1272", "protein_id": "molecule/8581101|orf_31-1272", "rna_call_id": "12699", "amino_acid_starts": [ 307 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/871958|orf_648-1319", "protein_id": "molecule/871958|orf_648-1319", "rna_call_id": "12420", "amino_acid_starts": [ 130 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9754436|orf_141-1166", "protein_id": "molecule/9754436|orf_141-1166", "rna_call_id": "12636", "amino_acid_starts": [ 285 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/2520|orf_503-1393", "protein_id": "2520|orf_503-1393", "rna_call_id": "14841", "amino_acid_starts": [ 216 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "protein_id": "eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "rna_call_id": "35499", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "35370", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "protein_id": "02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "rna_call_id": "105627", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "protein_id": "0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "rna_call_id": "107185", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "protein_id": "10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "rna_call_id": "103470", "amino_acid_starts": [ 182 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "protein_id": "118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "rna_call_id": "109719", "amino_acid_starts": [ 130 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "protein_id": "1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "rna_call_id": "104652", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "protein_id": "1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "rna_call_id": "108937", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "protein_id": "256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "rna_call_id": "104746", "amino_acid_starts": [ 130 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "protein_id": "2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "rna_call_id": "107892", "amino_acid_starts": [ 153 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "protein_id": "30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "rna_call_id": "103528", "amino_acid_starts": [ 181 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "protein_id": "4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "rna_call_id": "107168", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "protein_id": "706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "rna_call_id": "108337", "amino_acid_starts": [ 306 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "protein_id": "8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "rna_call_id": "106632", "amino_acid_starts": [ 130 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "protein_id": "91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "rna_call_id": "103197", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "protein_id": "a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "rna_call_id": "108859", "amino_acid_starts": [ 182 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "protein_id": "a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "rna_call_id": "104713", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "protein_id": "a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "rna_call_id": "107155", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "protein_id": "aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "rna_call_id": "110087", "amino_acid_starts": [ 96 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "protein_id": "b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "rna_call_id": "108682", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "protein_id": "c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "rna_call_id": "106966", "amino_acid_starts": [ 117 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "protein_id": "c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "rna_call_id": "105645", "amino_acid_starts": [ 182 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "protein_id": "dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "rna_call_id": "109516", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "106016", "amino_acid_starts": [ 307 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "protein_id": "f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "rna_call_id": "106977", "amino_acid_starts": [ 307 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "protein_id": "ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "rna_call_id": "121979", "amino_acid_starts": [ 87 ] } ] }, { "peptide_id": "DYNC1H1-chr14-101980529.peptide-4", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 3, "sequence": "KHGKRFHATISFDTDTGL", "scoring_region": { "sequence": "KHGKRFHATISFDTDTGL", "start": 0, "end": 18, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/4727|orf_121-1152", "protein_id": "4727|orf_121-1152", "rna_call_id": "42355", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "protein_id": "1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "rna_call_id": "28021", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "protein_id": "b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "rna_call_id": "27935", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "protein_id": "00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "rna_call_id": "97432", "amino_acid_starts": [ 128 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "protein_id": "09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "rna_call_id": "97472", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "protein_id": "0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "rna_call_id": "96597", "amino_acid_starts": [ 180 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "protein_id": "1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "rna_call_id": "97618", "amino_acid_starts": [ 180 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1e68f3b9-b9cb-491a-b618-6ccf1a1320e3_0|orf_123-1112", "protein_id": "1e68f3b9-b9cb-491a-b618-6ccf1a1320e3_0|orf_123-1112", "rna_call_id": "96719", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "protein_id": "2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "rna_call_id": "93691", "amino_acid_starts": [ 180 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/25a8f774-4f25-490c-b04b-a91934728e4d_0|orf_699-1427", "protein_id": "25a8f774-4f25-490c-b04b-a91934728e4d_0|orf_699-1427", "rna_call_id": "95594", "amino_acid_starts": [ 114 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2a0f27b5-e4be-4f3a-98aa-6181223dc077_0|orf_655-1110", "protein_id": "2a0f27b5-e4be-4f3a-98aa-6181223dc077_0|orf_655-1110", "rna_call_id": "96945", "amino_acid_starts": [ 128 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "protein_id": "3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "rna_call_id": "90616", "amino_acid_starts": [ 132 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "protein_id": "3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "rna_call_id": "96640", "amino_acid_starts": [ 306 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "protein_id": "3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "rna_call_id": "90903", "amino_acid_starts": [ 304 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "protein_id": "41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "rna_call_id": "97793", "amino_acid_starts": [ 128 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "protein_id": "5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "rna_call_id": "97800", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "protein_id": "5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "rna_call_id": "94022", "amino_acid_starts": [ 127 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "protein_id": "64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "rna_call_id": "97181", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "protein_id": "65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "rna_call_id": "95834", "amino_acid_starts": [ 240 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "protein_id": "690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "rna_call_id": "97092", "amino_acid_starts": [ 306 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "protein_id": "706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "rna_call_id": "96002", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "protein_id": "756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "rna_call_id": "94839", "amino_acid_starts": [ 283 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "protein_id": "79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "rna_call_id": "95989", "amino_acid_starts": [ 180 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "protein_id": "7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "rna_call_id": "94363", "amino_acid_starts": [ 180 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "protein_id": "924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "rna_call_id": "95351", "amino_acid_starts": [ 180 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "protein_id": "9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "rna_call_id": "92747", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "protein_id": "a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "rna_call_id": "91260", "amino_acid_starts": [ 150 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1165", "protein_id": "b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1165", "rna_call_id": "91966", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "protein_id": "c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "rna_call_id": "98154", "amino_acid_starts": [ 197 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "protein_id": "e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "rna_call_id": "98084", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "protein_id": "efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "rna_call_id": "95114", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "protein_id": "f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "rna_call_id": "92815", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "protein_id": "f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "rna_call_id": "90628", "amino_acid_starts": [ 94 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "protein_id": "f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "rna_call_id": "92206", "amino_acid_starts": [ 115 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "protein_id": "fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "rna_call_id": "97162", "amino_acid_starts": [ 128 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4502938|orf_120-1322", "protein_id": "molecule/4502938|orf_120-1322", "rna_call_id": "7522", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6406178|orf_91-1254", "protein_id": "molecule/6406178|orf_91-1254", "rna_call_id": "7638", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7964253|orf_118-1281", "protein_id": "molecule/7964253|orf_118-1281", "rna_call_id": "7601", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10653919|orf_594-1265", "protein_id": "molecule/10653919|orf_594-1265", "rna_call_id": "12692", "amino_acid_starts": [ 128 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2481063|orf_649-1314", "protein_id": "molecule/2481063|orf_649-1314", "rna_call_id": "11999", "amino_acid_starts": [ 128 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2754995|orf_467-1114", "protein_id": "molecule/2754995|orf_467-1114", "rna_call_id": "12563", "amino_acid_starts": [ 180 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2924331|orf_762-1142", "protein_id": "molecule/2924331|orf_762-1142", "rna_call_id": "12052", "amino_acid_starts": [ 91 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3104854|orf_120-1373", "protein_id": "molecule/3104854|orf_120-1373", "rna_call_id": "12055", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4600551|orf_120-1361", "protein_id": "molecule/4600551|orf_120-1361", "rna_call_id": "12118", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/591851|orf_92-1078", "protein_id": "molecule/591851|orf_92-1078", "rna_call_id": "12546", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6650045|orf_120-1211", "protein_id": "molecule/6650045|orf_120-1211", "rna_call_id": "12197", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7269789|orf_649-1212", "protein_id": "molecule/7269789|orf_649-1212", "rna_call_id": "12214", "amino_acid_starts": [ 128 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7302991|orf_119-1360", "protein_id": "molecule/7302991|orf_119-1360", "rna_call_id": "12217", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8365822|orf_102-1403", "protein_id": "molecule/8365822|orf_102-1403", "rna_call_id": "12496", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8581101|orf_31-1272", "protein_id": "molecule/8581101|orf_31-1272", "rna_call_id": "12699", "amino_acid_starts": [ 305 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/871958|orf_648-1319", "protein_id": "molecule/871958|orf_648-1319", "rna_call_id": "12420", "amino_acid_starts": [ 128 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9754436|orf_141-1166", "protein_id": "molecule/9754436|orf_141-1166", "rna_call_id": "12636", "amino_acid_starts": [ 283 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/2520|orf_503-1393", "protein_id": "2520|orf_503-1393", "rna_call_id": "14841", "amino_acid_starts": [ 214 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "protein_id": "eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "rna_call_id": "35499", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "35370", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "protein_id": "02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "rna_call_id": "105627", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "protein_id": "0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "rna_call_id": "107185", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "protein_id": "10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "rna_call_id": "103470", "amino_acid_starts": [ 180 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "protein_id": "118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "rna_call_id": "109719", "amino_acid_starts": [ 128 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "protein_id": "1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "rna_call_id": "104652", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "protein_id": "1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "rna_call_id": "108937", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "protein_id": "256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "rna_call_id": "104746", "amino_acid_starts": [ 128 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "protein_id": "2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "rna_call_id": "107892", "amino_acid_starts": [ 151 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "protein_id": "30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "rna_call_id": "103528", "amino_acid_starts": [ 179 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "protein_id": "4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "rna_call_id": "107168", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "protein_id": "706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "rna_call_id": "108337", "amino_acid_starts": [ 304 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "protein_id": "8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "rna_call_id": "106632", "amino_acid_starts": [ 128 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "protein_id": "91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "rna_call_id": "103197", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "protein_id": "a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "rna_call_id": "108859", "amino_acid_starts": [ 180 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "protein_id": "a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "rna_call_id": "104713", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "protein_id": "a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "rna_call_id": "107155", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "protein_id": "aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "rna_call_id": "110087", "amino_acid_starts": [ 94 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/af499934-3f90-438e-b381-ea7ba34bd35b_0|orf_141-1133", "protein_id": "af499934-3f90-438e-b381-ea7ba34bd35b_0|orf_141-1133", "rna_call_id": "106510", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "protein_id": "b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "rna_call_id": "108682", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "protein_id": "c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "rna_call_id": "106966", "amino_acid_starts": [ 115 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "protein_id": "c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "rna_call_id": "105645", "amino_acid_starts": [ 180 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "protein_id": "dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "rna_call_id": "109516", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "106016", "amino_acid_starts": [ 305 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "protein_id": "f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "rna_call_id": "106977", "amino_acid_starts": [ 305 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "protein_id": "ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "rna_call_id": "121979", "amino_acid_starts": [ 85 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/4727|orf_121-1152", "protein_id": "4727|orf_121-1152", "rna_call_id": "42355", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "protein_id": "1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_168-1481", "rna_call_id": "28021", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1946aa41-dae1-4d85-b155-f8e82b685bd9_0|orf_156-1106", "protein_id": "1946aa41-dae1-4d85-b155-f8e82b685bd9_0|orf_156-1106", "rna_call_id": "28272", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "protein_id": "b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1315", "rna_call_id": "27935", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "protein_id": "00f42e8c-9319-4ba9-a385-9da9939eb206_0|orf_648-1145", "rna_call_id": "97432", "variant_amino_acid_start": 137 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "protein_id": "09252ded-e409-4219-9880-4e10d5fd5f54_0|orf_126-1280", "rna_call_id": "97472", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "protein_id": "0f6b17ff-a0b3-42e1-8079-041b4e2f1390_0|orf_499-1440", "rna_call_id": "96597", "variant_amino_acid_start": 189 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_696-1112", "protein_id": "1773cbca-b51a-4cfd-8eff-070ff6a943c1_0|orf_696-1112", "rna_call_id": "92188", "variant_amino_acid_start": 136 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1946aa41-dae1-4d85-b155-f8e82b685bd9_0|orf_156-1103", "protein_id": "1946aa41-dae1-4d85-b155-f8e82b685bd9_0|orf_156-1103", "rna_call_id": "93104", "variant_amino_acid_start": 313 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/195a827e-5198-4514-b1d8-191175137286_0|orf_580-1155", "protein_id": "195a827e-5198-4514-b1d8-191175137286_0|orf_580-1155", "rna_call_id": "90777", "variant_amino_acid_start": 189 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "protein_id": "1a2035db-3716-4f20-8652-32bc0621ad84_0|orf_497-1423", "rna_call_id": "97618", "variant_amino_acid_start": 189 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1e68f3b9-b9cb-491a-b618-6ccf1a1320e3_0|orf_123-1112", "protein_id": "1e68f3b9-b9cb-491a-b618-6ccf1a1320e3_0|orf_123-1112", "rna_call_id": "96719", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "protein_id": "2316f862-fbb4-45aa-ad91-56b4a5558b12_0|orf_530-1351", "rna_call_id": "93691", "variant_amino_acid_start": 189 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/25a8f774-4f25-490c-b04b-a91934728e4d_0|orf_699-1427", "protein_id": "25a8f774-4f25-490c-b04b-a91934728e4d_0|orf_699-1427", "rna_call_id": "95594", "variant_amino_acid_start": 123 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2a0f27b5-e4be-4f3a-98aa-6181223dc077_0|orf_655-1110", "protein_id": "2a0f27b5-e4be-4f3a-98aa-6181223dc077_0|orf_655-1110", "rna_call_id": "96945", "variant_amino_acid_start": 137 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "protein_id": "3788df39-2b11-4066-9b45-a6fcab1b855c_0|orf_727-1512", "rna_call_id": "90616", "variant_amino_acid_start": 141 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3a8f1ab6-9e53-4353-b06b-682a3c499e5a_0|orf_148-1098", "protein_id": "3a8f1ab6-9e53-4353-b06b-682a3c499e5a_0|orf_148-1098", "rna_call_id": "93889", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "protein_id": "3d4747a9-9989-466d-9db7-e6743bb3e00e_0|orf_123-1442", "rna_call_id": "96640", "variant_amino_acid_start": 315 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "protein_id": "3f92c5d2-d5fe-479f-b35c-33d8e5e012d0_0|orf_187-1380", "rna_call_id": "90903", "variant_amino_acid_start": 313 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "protein_id": "41253a79-da77-4bf0-8fdd-91a65938e7af_0|orf_654-1394", "rna_call_id": "97793", "variant_amino_acid_start": 137 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/4d98721c-6f0b-4e05-baa0-3e62e54dd473_0|orf_124-1287", "protein_id": "4d98721c-6f0b-4e05-baa0-3e62e54dd473_0|orf_124-1287", "rna_call_id": "96334", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5056a6c0-3dcc-4c39-9dc3-24e0a1b4da51_0|orf_648-1391", "protein_id": "5056a6c0-3dcc-4c39-9dc3-24e0a1b4da51_0|orf_648-1391", "rna_call_id": "98046", "variant_amino_acid_start": 137 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "protein_id": "5815ba88-c90a-47ed-a402-7a3f5bf599fe_0|orf_121-1116", "rna_call_id": "97800", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5b00e49a-f064-418e-89cc-27af642b38a0_0|orf_367-1137", "protein_id": "5b00e49a-f064-418e-89cc-27af642b38a0_0|orf_367-1137", "rna_call_id": "91919", "variant_amino_acid_start": 248 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "protein_id": "5c2b2f89-d67a-4315-9886-34024603224a_0|orf_673-1437", "rna_call_id": "94022", "variant_amino_acid_start": 136 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64eb05f8-7cd9-4424-90bf-106dd82dbd7c_0|orf_691-1110", "protein_id": "64eb05f8-7cd9-4424-90bf-106dd82dbd7c_0|orf_691-1110", "rna_call_id": "92975", "variant_amino_acid_start": 137 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "protein_id": "64ee7e73-213c-48d2-a115-135b406f9260_0|orf_123-1319", "rna_call_id": "97181", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "protein_id": "65edf0e5-b076-492c-81d4-695cc3e0e4ba_0|orf_308-1135", "rna_call_id": "95834", "variant_amino_acid_start": 249 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "protein_id": "690dbadc-769a-435e-a0d8-273fbf3c92d6_0|orf_123-1439", "rna_call_id": "97092", "variant_amino_acid_start": 315 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6f55233a-6ac6-41f4-a90c-cfb03f75ff9b_0|orf_132-1082", "protein_id": "6f55233a-6ac6-41f4-a90c-cfb03f75ff9b_0|orf_132-1082", "rna_call_id": "95050", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "protein_id": "706036d9-5763-4bc3-a778-78e6714c83af_0|orf_123-1442", "rna_call_id": "96002", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "protein_id": "756a36c6-cecf-4b2b-af18-8d780eb0bab7_0|orf_207-1169", "rna_call_id": "94839", "variant_amino_acid_start": 292 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "protein_id": "79173218-7b8e-4d55-b31b-f64771d50d3e_0|orf_499-1257", "rna_call_id": "95989", "variant_amino_acid_start": 189 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "protein_id": "7cb990d0-ddf0-478f-84bb-4b2d44ed6d80_0|orf_519-1460", "rna_call_id": "94363", "variant_amino_acid_start": 189 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8fabbf01-940a-432f-9d5c-692e3a35c9e3_0|orf_687-1124", "protein_id": "8fabbf01-940a-432f-9d5c-692e3a35c9e3_0|orf_687-1124", "rna_call_id": "94525", "variant_amino_acid_start": 137 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "protein_id": "924f4aa7-2973-4d18-afb8-af726d009722_0|orf_509-1450", "rna_call_id": "95351", "variant_amino_acid_start": 189 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9d685284-1311-4718-9b78-003d57de1a72_0|orf_496-1068", "protein_id": "9d685284-1311-4718-9b78-003d57de1a72_0|orf_496-1068", "rna_call_id": "97486", "variant_amino_acid_start": 188 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "protein_id": "9ff4ee4a-ef0a-4dba-977b-f6898e76b37d_0|orf_160-1356", "rna_call_id": "92747", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "protein_id": "a29da6cb-7e04-4a80-9439-1b2ecc0ff34b_0|orf_641-1183", "rna_call_id": "91260", "variant_amino_acid_start": 159 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1165", "protein_id": "b8b15f01-e46c-4371-8027-db93ca821aba_0|orf_173-1165", "rna_call_id": "91966", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "protein_id": "c3ed65df-e60c-4332-a879-47ac7e7ff1b4_0|orf_446-1423", "rna_call_id": "98154", "variant_amino_acid_start": 206 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "protein_id": "e86235e3-e3df-46dc-9445-df0da07e4da8_0|orf_120-1391", "rna_call_id": "98084", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "protein_id": "efb19ce2-fb2f-4ac9-8039-3f18a4c3f63e_0|orf_132-1130", "rna_call_id": "95114", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "protein_id": "f10924ff-96f7-4b55-9403-9a241ea3f502_0|orf_161-1357", "rna_call_id": "92815", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "protein_id": "f4a2b2a6-9e0e-47de-9ee8-b8219ac324f2_0|orf_843-1529", "rna_call_id": "90628", "variant_amino_acid_start": 103 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f66a2949-a6ba-4629-bf49-02044320b170_0|orf_117-1067", "protein_id": "f66a2949-a6ba-4629-bf49-02044320b170_0|orf_117-1067", "rna_call_id": "97300", "variant_amino_acid_start": 314 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "protein_id": "f6d71e95-22fb-4e83-9786-36b1082e9561_0|orf_742-1473", "rna_call_id": "92206", "variant_amino_acid_start": 124 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "protein_id": "fe383e2a-3eb0-4160-b6e1-83e7e3fff992_0|orf_652-1944", "rna_call_id": "97162", "variant_amino_acid_start": 137 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10732355|orf_120-1013", "protein_id": "molecule/10732355|orf_120-1013", "rna_call_id": "7576", "variant_amino_acid_start": 295 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4502938|orf_120-1322", "protein_id": "molecule/4502938|orf_120-1322", "rna_call_id": "7522", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6406178|orf_91-1254", "protein_id": "molecule/6406178|orf_91-1254", "rna_call_id": "7638", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7964253|orf_118-1281", "protein_id": "molecule/7964253|orf_118-1281", "rna_call_id": "7601", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10653919|orf_594-1265", "protein_id": "molecule/10653919|orf_594-1265", "rna_call_id": "12692", "variant_amino_acid_start": 137 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2481063|orf_649-1314", "protein_id": "molecule/2481063|orf_649-1314", "rna_call_id": "11999", "variant_amino_acid_start": 137 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2754995|orf_467-1114", "protein_id": "molecule/2754995|orf_467-1114", "rna_call_id": "12563", "variant_amino_acid_start": 189 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2924331|orf_762-1142", "protein_id": "molecule/2924331|orf_762-1142", "rna_call_id": "12052", "variant_amino_acid_start": 100 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3104854|orf_120-1373", "protein_id": "molecule/3104854|orf_120-1373", "rna_call_id": "12055", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4600551|orf_120-1361", "protein_id": "molecule/4600551|orf_120-1361", "rna_call_id": "12118", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/591851|orf_92-1078", "protein_id": "molecule/591851|orf_92-1078", "rna_call_id": "12546", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6650045|orf_120-1211", "protein_id": "molecule/6650045|orf_120-1211", "rna_call_id": "12197", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7144507|orf_63-1019", "protein_id": "molecule/7144507|orf_63-1019", "rna_call_id": "12694", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7269789|orf_649-1212", "protein_id": "molecule/7269789|orf_649-1212", "rna_call_id": "12214", "variant_amino_acid_start": 137 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7302991|orf_119-1360", "protein_id": "molecule/7302991|orf_119-1360", "rna_call_id": "12217", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8365822|orf_102-1403", "protein_id": "molecule/8365822|orf_102-1403", "rna_call_id": "12496", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8581101|orf_31-1272", "protein_id": "molecule/8581101|orf_31-1272", "rna_call_id": "12699", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/871958|orf_648-1319", "protein_id": "molecule/871958|orf_648-1319", "rna_call_id": "12420", "variant_amino_acid_start": 137 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9754436|orf_141-1166", "protein_id": "molecule/9754436|orf_141-1166", "rna_call_id": "12636", "variant_amino_acid_start": 292 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/2520|orf_503-1393", "protein_id": "2520|orf_503-1393", "rna_call_id": "14841", "variant_amino_acid_start": 223 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0dfc7a1f-57b8-4700-9215-3ed5c675e105_0|orf_121-1068", "protein_id": "0dfc7a1f-57b8-4700-9215-3ed5c675e105_0|orf_121-1068", "rna_call_id": "36576", "variant_amino_acid_start": 313 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5aa51d21-8143-4731-a18e-307093536b34_0|orf_63-113", "protein_id": "5aa51d21-8143-4731-a18e-307093536b34_0|orf_63-113", "rna_call_id": "36781", "variant_amino_acid_start": 8 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5faa1e14-700f-4a61-af59-37fbbed7a53d_0|orf_260-1159", "protein_id": "5faa1e14-700f-4a61-af59-37fbbed7a53d_0|orf_260-1159", "rna_call_id": "34526", "variant_amino_acid_start": 291 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/73c4d1b3-4757-4c43-8e84-c0c7fd975f3a_0|orf_185-235", "protein_id": "73c4d1b3-4757-4c43-8e84-c0c7fd975f3a_0|orf_185-235", "rna_call_id": "36762", "variant_amino_acid_start": 8 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/c73ee1f9-aac9-4e34-aa99-a674f2adacf0_0|orf_102-152", "protein_id": "c73ee1f9-aac9-4e34-aa99-a674f2adacf0_0|orf_102-152", "rna_call_id": "36773", "variant_amino_acid_start": 8 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "protein_id": "eb53c2a4-829b-4c58-bd80-76774b30d6b9_0|orf_142-2214", "rna_call_id": "35499", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "35370", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "protein_id": "02cfa4ab-d51d-47b0-a953-a7daae94e4a7_0|orf_153-1454", "rna_call_id": "105627", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "protein_id": "0be981d7-9477-40bb-bf23-26e01a5a0c21_0|orf_134-1330", "rna_call_id": "107185", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0dfc7a1f-57b8-4700-9215-3ed5c675e105_0|orf_121-1068", "protein_id": "0dfc7a1f-57b8-4700-9215-3ed5c675e105_0|orf_121-1068", "rna_call_id": "109919", "variant_amino_acid_start": 313 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "protein_id": "10d1bb5d-046c-4cec-aa79-f5a1a317c84d_0|orf_564-1442", "rna_call_id": "103470", "variant_amino_acid_start": 189 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "protein_id": "118fc17b-ea87-4500-9002-75b9eb90c7b7_0|orf_654-1394", "rna_call_id": "109719", "variant_amino_acid_start": 137 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/169f1971-81be-4233-a9ff-81384c21bfa4_0|orf_123-1073", "protein_id": "169f1971-81be-4233-a9ff-81384c21bfa4_0|orf_123-1073", "rna_call_id": "108929", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "protein_id": "1ca99262-06be-40e6-9de4-84e24c15f31c_0|orf_164-1360", "rna_call_id": "104652", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "protein_id": "1ed8164a-791b-4e27-af88-2691b841a8aa_0|orf_123-1424", "rna_call_id": "108937", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "protein_id": "256b8823-1327-4f7b-a0da-8b1f333caf74_0|orf_694-1464", "rna_call_id": "104746", "variant_amino_acid_start": 137 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "protein_id": "2d3d4269-f986-4de4-929c-707a91988c1a_0|orf_585-1319", "rna_call_id": "107892", "variant_amino_acid_start": 160 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2e07b2d9-8c90-46a2-83c0-739565ff88f7_0|orf_173-1225", "protein_id": "2e07b2d9-8c90-46a2-83c0-739565ff88f7_0|orf_173-1225", "rna_call_id": "104112", "variant_amino_acid_start": 312 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "protein_id": "30204c1c-ff35-4c19-a42c-04b4abdba915_0|orf_594-1520", "rna_call_id": "103528", "variant_amino_acid_start": 188 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "protein_id": "4da197fe-a83b-4662-9dbf-485d0e888aaf_0|orf_152-1453", "rna_call_id": "107168", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/50388116-bd4e-41f8-9210-4d36800d28e4_0|orf_183-1133", "protein_id": "50388116-bd4e-41f8-9210-4d36800d28e4_0|orf_183-1133", "rna_call_id": "103621", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5423a35e-9ed1-41ba-aecd-3083f741d8a0_0|orf_165-1115", "protein_id": "5423a35e-9ed1-41ba-aecd-3083f741d8a0_0|orf_165-1115", "rna_call_id": "105270", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5aa51d21-8143-4731-a18e-307093536b34_0|orf_63-113", "protein_id": "5aa51d21-8143-4731-a18e-307093536b34_0|orf_63-113", "rna_call_id": "110575", "variant_amino_acid_start": 8 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/621482a9-cb80-40fe-b00c-0e77e6034351_0|orf_124-1074", "protein_id": "621482a9-cb80-40fe-b00c-0e77e6034351_0|orf_124-1074", "rna_call_id": "108126", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "protein_id": "706584e1-7a9b-4996-8e21-9d277676e12d_0|orf_120-1388", "rna_call_id": "108337", "variant_amino_acid_start": 313 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/74c23e54-2e9c-439e-acf0-2719efcbcc8a_0|orf_121-1071", "protein_id": "74c23e54-2e9c-439e-acf0-2719efcbcc8a_0|orf_121-1071", "rna_call_id": "110058", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "protein_id": "8d6b541e-dc59-4a6b-825c-534f1e2a6a51_0|orf_673-1335", "rna_call_id": "106632", "variant_amino_acid_start": 137 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "protein_id": "91ef250a-e2e4-49fd-ab48-ea8354453ebf_0|orf_236-1537", "rna_call_id": "103197", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "protein_id": "a412b1bc-143b-48f5-83df-37fa395034a3_0|orf_500-1426", "rna_call_id": "108859", "variant_amino_acid_start": 189 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "protein_id": "a48d1405-52a7-42a2-84d6-ffe8ef7fec0b_0|orf_164-1414", "rna_call_id": "104713", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "protein_id": "a9052758-22a0-4c2d-88ce-9f9020f99ab1_0|orf_134-1531", "rna_call_id": "107155", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "protein_id": "aca72ae6-7f5e-44e6-84d4-ddb3b1aed638_0|orf_753-1388", "rna_call_id": "110087", "variant_amino_acid_start": 103 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/af499934-3f90-438e-b381-ea7ba34bd35b_0|orf_141-1133", "protein_id": "af499934-3f90-438e-b381-ea7ba34bd35b_0|orf_141-1133", "rna_call_id": "106510", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "protein_id": "b492f92c-35c6-4f52-8973-4b1183b05f0d_0|orf_124-1317", "rna_call_id": "108682", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "protein_id": "c2c5a1e2-610a-442f-83cc-10e8d2769449_0|orf_707-1300", "rna_call_id": "106966", "variant_amino_acid_start": 124 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "protein_id": "c3683a56-3281-4427-935b-cc37b3c1f775_0|orf_523-1311", "rna_call_id": "105645", "variant_amino_acid_start": 189 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c73ee1f9-aac9-4e34-aa99-a674f2adacf0_0|orf_103-153", "protein_id": "c73ee1f9-aac9-4e34-aa99-a674f2adacf0_0|orf_103-153", "rna_call_id": "110567", "variant_amino_acid_start": 8 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "protein_id": "dc495107-d265-409f-bd5f-dbe643725b62_0|orf_118-1419", "rna_call_id": "109516", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e3a99d73-0425-4051-b31a-5aa4e16adcbf_0|orf_129-1082", "protein_id": "e3a99d73-0425-4051-b31a-5aa4e16adcbf_0|orf_129-1082", "rna_call_id": "107514", "variant_amino_acid_start": 315 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "protein_id": "f527ade8-47fe-469f-a6a1-5d042ecfa6ac_0|orf_148-1314", "rna_call_id": "106016", "variant_amino_acid_start": 314 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "protein_id": "f8dd7a11-e04e-403b-a9ad-18f4142e3a11_0|orf_136-1332", "rna_call_id": "106977", "variant_amino_acid_start": 314 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "protein_id": "ca78c148-ceeb-4a3b-bbb8-ce944febbf4b_0|orf_784-1320", "rna_call_id": "121979", "variant_amino_acid_start": 94 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 2 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 160 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 160 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 183 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 182 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 2 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 134 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 134 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 3 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 236, "alt_reads": 177, "total_reads": 414, "vaf": 0.4275, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 694, "alt_reads": 0, "total_reads": 695, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 730, "alt_reads": 416, "total_reads": 1153, "vaf": 0.3608, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 71, "alt_reads": 53, "total_reads": 126, "vaf": 0.4206, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 724, "alt_reads": 397, "total_reads": 1127, "vaf": 0.3523, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 275, "alt_reads": 48, "total_reads": 324, "vaf": 0.1481, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 581, "alt_reads": 106, "total_reads": 689, "vaf": 0.1538, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 277, "alt_reads": 51, "total_reads": 329, "vaf": 0.155, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 104, "alt_reads": 61, "total_reads": 165, "vaf": 0.3697, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 172, "alt_reads": 47, "total_reads": 219, "vaf": 0.2146, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 61, "alt_reads": 11, "total_reads": 72, "vaf": 0.1528, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 134, "alt_reads": 0, "total_reads": 134, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1946, "alt_reads": 886, "total_reads": 2833, "vaf": 0.3127, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 2343, "alt_reads": 752, "total_reads": 3095, "vaf": 0.243, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 2466, "alt_reads": 11, "total_reads": 2477, "vaf": 0.0044, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 886, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 886, "category": "multiple", "sid_alt_reads": 886, "exacto_raw_rnas": 160 }, "T2-ONT": { "max_alt_reads": 752, "category": "multiple", "sid_alt_reads": 752, "exacto_raw_rnas": 134 }, "T3-ONT": { "max_alt_reads": 11, "category": "multiple", "sid_alt_reads": 11, "exacto_raw_rnas": 3 }, "T1-PacBio": { "max_alt_reads": 182, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 182 }, "T2-ILMN": { "max_alt_reads": 106, "category": "multiple", "sid_alt_reads": 106, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "SPG11-chr15-44660435", "gene": "SPG11", "chrom": "chr15", "pos": 44660435, "ref": "T", "alt": "C", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ile147Val", "consequence": "missense_variant", "vaccines": [ "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "SPG11-chr15-44660435.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 13, "sequence": "ATILYSCSREALQKLIDDQDVSISLLSLRIL", "scoring_region": { "sequence": "ATILYSCSREALQKLIDDQDVSISLLSLRIL", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0c68b5bc-4889-4a1f-b632-2025367912bd_0|orf_2-1096", "protein_id": "0c68b5bc-4889-4a1f-b632-2025367912bd_0|orf_2-1096", "rna_call_id": "118838", "amino_acid_starts": [ 128 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1273e865-89ea-480f-8889-121deaba2880_0|orf_79-1521", "protein_id": "1273e865-89ea-480f-8889-121deaba2880_0|orf_79-1521", "rna_call_id": "115637", "amino_acid_starts": [ 106 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2ec22c5d-0b3d-44f1-be6b-adb1988c4f9d_0|orf_23-1522", "protein_id": "2ec22c5d-0b3d-44f1-be6b-adb1988c4f9d_0|orf_23-1522", "rna_call_id": "118184", "amino_acid_starts": [ 125 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/505f75f7-019d-4729-b1f0-26115ae8d9c7_0|orf_17-1687", "protein_id": "505f75f7-019d-4729-b1f0-26115ae8d9c7_0|orf_17-1687", "rna_call_id": "115458", "amino_acid_starts": [ 127 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/51aeb913-ec99-4fb6-b724-2bac072c9773_0|orf_6-620", "protein_id": "51aeb913-ec99-4fb6-b724-2bac072c9773_0|orf_6-620", "rna_call_id": "114931", "amino_acid_starts": [ 100 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/55e138fb-874d-42bc-8e8f-4a921b51fc36_0|orf_27-635", "protein_id": "55e138fb-874d-42bc-8e8f-4a921b51fc36_0|orf_27-635", "rna_call_id": "116467", "amino_acid_starts": [ 127 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b10d82e2-21a8-448a-92f3-af1b108b62af_0|orf_82-1656", "protein_id": "b10d82e2-21a8-448a-92f3-af1b108b62af_0|orf_82-1656", "rna_call_id": "118072", "amino_acid_starts": [ 108 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bae190a8-5619-4082-9070-ae11b7be9563_0|orf_38-916", "protein_id": "bae190a8-5619-4082-9070-ae11b7be9563_0|orf_38-916", "rna_call_id": "116201", "amino_acid_starts": [ 107 ] } ] }, { "peptide_id": "SPG11-chr15-44660435.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "KLIDDQDVSI", "scoring_region": { "sequence": "KLIDDQDVSI", "start": 0, "end": 10, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0c68b5bc-4889-4a1f-b632-2025367912bd_0|orf_2-1096", "protein_id": "0c68b5bc-4889-4a1f-b632-2025367912bd_0|orf_2-1096", "rna_call_id": "118838", "amino_acid_starts": [ 141 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1273e865-89ea-480f-8889-121deaba2880_0|orf_79-1521", "protein_id": "1273e865-89ea-480f-8889-121deaba2880_0|orf_79-1521", "rna_call_id": "115637", "amino_acid_starts": [ 119 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2ec22c5d-0b3d-44f1-be6b-adb1988c4f9d_0|orf_23-1522", "protein_id": "2ec22c5d-0b3d-44f1-be6b-adb1988c4f9d_0|orf_23-1522", "rna_call_id": "118184", "amino_acid_starts": [ 138 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/505f75f7-019d-4729-b1f0-26115ae8d9c7_0|orf_17-1687", "protein_id": "505f75f7-019d-4729-b1f0-26115ae8d9c7_0|orf_17-1687", "rna_call_id": "115458", "amino_acid_starts": [ 140 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/51aeb913-ec99-4fb6-b724-2bac072c9773_0|orf_6-620", "protein_id": "51aeb913-ec99-4fb6-b724-2bac072c9773_0|orf_6-620", "rna_call_id": "114931", "amino_acid_starts": [ 113 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/55e138fb-874d-42bc-8e8f-4a921b51fc36_0|orf_27-635", "protein_id": "55e138fb-874d-42bc-8e8f-4a921b51fc36_0|orf_27-635", "rna_call_id": "116467", "amino_acid_starts": [ 140 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b10d82e2-21a8-448a-92f3-af1b108b62af_0|orf_82-1656", "protein_id": "b10d82e2-21a8-448a-92f3-af1b108b62af_0|orf_82-1656", "rna_call_id": "118072", "amino_acid_starts": [ 121 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bae190a8-5619-4082-9070-ae11b7be9563_0|orf_38-916", "protein_id": "bae190a8-5619-4082-9070-ae11b7be9563_0|orf_38-916", "rna_call_id": "116201", "amino_acid_starts": [ 120 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/4eaab93d-e358-4146-bc4c-416d549a2394_1|orf_381-479", "protein_id": "4eaab93d-e358-4146-bc4c-416d549a2394_1|orf_381-479", "rna_call_id": "102385", "variant_amino_acid_start": 25 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0c68b5bc-4889-4a1f-b632-2025367912bd_0|orf_2-1096", "protein_id": "0c68b5bc-4889-4a1f-b632-2025367912bd_0|orf_2-1096", "rna_call_id": "118838", "variant_amino_acid_start": 148 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1273e865-89ea-480f-8889-121deaba2880_0|orf_79-1521", "protein_id": "1273e865-89ea-480f-8889-121deaba2880_0|orf_79-1521", "rna_call_id": "115637", "variant_amino_acid_start": 126 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2ec22c5d-0b3d-44f1-be6b-adb1988c4f9d_0|orf_23-1522", "protein_id": "2ec22c5d-0b3d-44f1-be6b-adb1988c4f9d_0|orf_23-1522", "rna_call_id": "118184", "variant_amino_acid_start": 145 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/505f75f7-019d-4729-b1f0-26115ae8d9c7_0|orf_17-1687", "protein_id": "505f75f7-019d-4729-b1f0-26115ae8d9c7_0|orf_17-1687", "rna_call_id": "115458", "variant_amino_acid_start": 147 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/51aeb913-ec99-4fb6-b724-2bac072c9773_0|orf_6-620", "protein_id": "51aeb913-ec99-4fb6-b724-2bac072c9773_0|orf_6-620", "rna_call_id": "114931", "variant_amino_acid_start": 120 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/55e138fb-874d-42bc-8e8f-4a921b51fc36_0|orf_27-635", "protein_id": "55e138fb-874d-42bc-8e8f-4a921b51fc36_0|orf_27-635", "rna_call_id": "116467", "variant_amino_acid_start": 147 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/acc68b52-f7c5-405d-afa0-54c826658b7a_0|orf_12-473", "protein_id": "acc68b52-f7c5-405d-afa0-54c826658b7a_0|orf_12-473", "rna_call_id": "118925", "variant_amino_acid_start": 146 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b10d82e2-21a8-448a-92f3-af1b108b62af_0|orf_82-1656", "protein_id": "b10d82e2-21a8-448a-92f3-af1b108b62af_0|orf_82-1656", "rna_call_id": "118072", "variant_amino_acid_start": 128 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bae190a8-5619-4082-9070-ae11b7be9563_0|orf_38-916", "protein_id": "bae190a8-5619-4082-9070-ae11b7be9563_0|orf_38-916", "rna_call_id": "116201", "variant_amino_acid_start": 127 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 23 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 35, "alt_reads": 0, "total_reads": 35, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 384, "alt_reads": 0, "total_reads": 384, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 107, "alt_reads": 4, "total_reads": 111, "vaf": 0.036, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 25, "alt_reads": 0, "total_reads": 25, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 107, "alt_reads": 4, "total_reads": 111, "vaf": 0.036, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 38, "alt_reads": 1, "total_reads": 39, "vaf": 0.0256, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 71, "alt_reads": 5, "total_reads": 76, "vaf": 0.0658, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 38, "alt_reads": 1, "total_reads": 39, "vaf": 0.0256, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 56, "alt_reads": 0, "total_reads": 56, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 107, "alt_reads": 4, "total_reads": 111, "vaf": 0.036, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 10, "alt_reads": 1, "total_reads": 11, "vaf": 0.0909, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 183, "alt_reads": 2, "total_reads": 185, "vaf": 0.0108, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 262, "alt_reads": 1, "total_reads": 264, "vaf": 0.0038, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 262, "alt_reads": 23, "total_reads": 285, "vaf": 0.0807, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 673, "alt_reads": 0, "total_reads": 674, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 23, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T2-ONT": { "max_alt_reads": 23, "category": "multiple", "sid_alt_reads": 23, "exacto_raw_rnas": 23 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 5, "category": "multiple", "sid_alt_reads": 5, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "MYO9A-chr15-71994488", "gene": "MYO9A", "chrom": "chr15", "pos": 71994488, "ref": "T", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Asp523Val", "consequence": "missense_variant", "vaccines": [ "JLF V2" ], "published_vaccine_peptides": [ { "peptide_id": "MYO9A-chr15-71994488.peptide-1", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038R.MT.53.MYO9A", "pool": "L3", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038R.MT.53.MYO9A.1", "pool": "Pool 1", "result": "Positive (Weak)", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038R.MT.53.MYO9A.1", "pool": "", "result": "Negative", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.53.MYO9A.1", "pool": "NA", "result": "Positive (Strong)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "KKFDWIVFRINHALLNSKVLEHNTK", "scoring_region": { "sequence": "FDWIVFRINHALLNSKVLEHNTK", "start": 2, "end": 25, "terminal_tags": [ { "terminus": "N", "start": 0, "end": 2, "sequence": "KK" } ] }, "matches": [] } ], "candidate_outcome": "no_call", "residue_confirmed": null, "reconstructed_candidates": [], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 78, "alt_reads": 2, "total_reads": 80, "vaf": 0.025, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 130, "alt_reads": 0, "total_reads": 130, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 223, "alt_reads": 2, "total_reads": 225, "vaf": 0.0089, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 20, "alt_reads": 0, "total_reads": 20, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 226, "alt_reads": 0, "total_reads": 226, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 42, "alt_reads": 0, "total_reads": 42, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 103, "alt_reads": 0, "total_reads": 103, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 42, "alt_reads": 0, "total_reads": 42, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 7, "alt_reads": 0, "total_reads": 7, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 50, "alt_reads": 0, "total_reads": 50, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 3, "alt_reads": 0, "total_reads": 3, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 13, "alt_reads": 0, "total_reads": 13, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 57, "alt_reads": 0, "total_reads": 57, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 93, "alt_reads": 1, "total_reads": 94, "vaf": 0.0106, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 125, "alt_reads": 0, "total_reads": 125, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 1, "category": "single", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "NR2F2-chr15-96332299", "gene": "NR2F2", "chrom": "chr15", "pos": 96332299, "ref": "G", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Gly65Val", "consequence": "missense_variant", "vaccines": [ "CeGaT", "JLF V2" ], "published_vaccine_peptides": [ { "peptide_id": "NR2F2-chr15-96332299.peptide-1", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038R.MT.58.NR2F2", "pool": "L3", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.58.NR2F2.2", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "AQTAAGGQGGPGVPGSDKQQQQQHIE", "scoring_region": { "sequence": "AQTAAGGQGGPGVPGSDKQQQQQHIE", "start": 0, "end": 26, "terminal_tags": [] }, "matches": [] }, { "peptide_id": "NR2F2-chr15-96332299.peptide-2", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "AGGQGGPGVPGSDKQQQ", "scoring_region": { "sequence": "AGGQGGPGVPGSDKQQQ", "start": 0, "end": 17, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "no_call", "residue_confirmed": null, "reconstructed_candidates": [], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 10, "alt_reads": 0, "total_reads": 10, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 23, "alt_reads": 0, "total_reads": 23, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 69, "alt_reads": 0, "total_reads": 69, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 4, "alt_reads": 0, "total_reads": 4, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 69, "alt_reads": 0, "total_reads": 69, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 9, "alt_reads": 0, "total_reads": 9, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 16, "alt_reads": 0, "total_reads": 16, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 9, "alt_reads": 0, "total_reads": 9, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 22, "alt_reads": 0, "total_reads": 22, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 45, "alt_reads": 0, "total_reads": 45, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 45, "alt_reads": 0, "total_reads": 45, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 6, "alt_reads": 0, "total_reads": 6, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 17, "alt_reads": 0, "total_reads": 17, "vaf": 0.0, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 0, "category": "zero", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "KIF1C-chr17-5007293", "gene": "KIF1C", "chrom": "chr17", "pos": 5007293, "ref": "G", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Glu456Lys", "consequence": "missense_variant", "vaccines": [ "JLF V1", "JLF V2" ], "published_vaccine_peptides": [ { "peptide_id": "KIF1C-chr17-5007293.peptide-1", "experiments": [ { "additional_testing": "", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038R.MT.60.KIF1C", "pool": "L1", "result": "Negative", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2023-09-22", "experiment": "UNC Immune Monitoring (Spring, 2024)", "outcomes": "Observed reactivity to MAP2 / TECPR1; no sequencing performed", "pbmcs_label": "(2023/09/22, 2023/11/28)", "peptide_id": "JLF-100-038R.MT.60.KIF1C.2", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs stimulated with 9 pooled CSBio long peptides. ELISPOT performed with individual peptide stimulation." }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.60.KIF1C.2", "pool": "NA", "result": "Positive (Weak)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2", "JLF V1" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "TEKIIAELNKTWEEKLRKTEA", "scoring_region": { "sequence": "TEKIIAELNKTWEEKLRKTEA", "start": 0, "end": 21, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "no_call", "residue_confirmed": null, "reconstructed_candidates": [], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 86, "alt_reads": 59, "total_reads": 145, "vaf": 0.4069, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 731, "alt_reads": 0, "total_reads": 731, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 190, "alt_reads": 0, "total_reads": 190, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 66, "alt_reads": 31, "total_reads": 97, "vaf": 0.3196, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 186, "alt_reads": 0, "total_reads": 186, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 65, "alt_reads": 0, "total_reads": 65, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 112, "alt_reads": 0, "total_reads": 112, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 66, "alt_reads": 0, "total_reads": 66, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 24, "alt_reads": 0, "total_reads": 24, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 53, "alt_reads": 0, "total_reads": 53, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 31, "alt_reads": 0, "total_reads": 31, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 13, "alt_reads": 0, "total_reads": 13, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 25, "alt_reads": 0, "total_reads": 25, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 103, "alt_reads": 0, "total_reads": 104, "vaf": 0.0, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 71, "alt_reads": 0, "total_reads": 71, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 0, "category": "zero", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "NME1-chr17-51154443", "gene": "NME1", "chrom": "chr17", "pos": 51154443, "ref": "G", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Gly24Arg", "consequence": "intron_variant", "vaccines": [ "CeGaT" ], "published_vaccine_peptides": [ { "peptide_id": "NME1-chr17-51154443.peptide-1", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "PPISSCDTRTMAN", "scoring_region": { "sequence": "PPISSCDTRTMAN", "start": 0, "end": 13, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly", "reconstruction_id": "T1-ONT/assembly/510|orf_248-784", "protein_id": "510|orf_248-784", "rna_call_id": "5557", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly", "reconstruction_id": "T1-ONT/assembly/529|orf_236-1114", "protein_id": "529|orf_236-1114", "rna_call_id": "5562", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/2722|orf_254-787", "protein_id": "2722|orf_254-787", "rna_call_id": "17008", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/6053|orf_142-1020", "protein_id": "6053|orf_142-1020", "rna_call_id": "17137", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/650|orf_254-787", "protein_id": "650|orf_254-787", "rna_call_id": "17000", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/676|orf_241-564", "protein_id": "676|orf_241-564", "rna_call_id": "17018", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/706|orf_254-787", "protein_id": "706|orf_254-787", "rna_call_id": "17005", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/94|orf_821-1240", "protein_id": "94|orf_821-1240", "rna_call_id": "16979", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/1794|orf_254-787", "protein_id": "1794|orf_254-787", "rna_call_id": "48524", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/5467|orf_536-1414", "protein_id": "5467|orf_536-1414", "rna_call_id": "48650", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/6161|orf_254-787", "protein_id": "6161|orf_254-787", "rna_call_id": "48529", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/687|orf_254-787", "protein_id": "687|orf_254-787", "rna_call_id": "48520", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/711|orf_241-564", "protein_id": "711|orf_241-564", "rna_call_id": "48537", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/84|orf_824-1243", "protein_id": "84|orf_824-1243", "rna_call_id": "48499", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T1-ONT/assembly-unspliced/5172|orf_179-712", "protein_id": "5172|orf_179-712", "rna_call_id": "21913", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T1-ONT/assembly-unspliced/550|orf_236-1114", "protein_id": "550|orf_236-1114", "rna_call_id": "21898", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T1-ONT/assembly-unspliced/703|orf_241-564", "protein_id": "703|orf_241-564", "rna_call_id": "21894", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521", "protein_id": "0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521", "rna_call_id": "33309", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-788", "protein_id": "0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-788", "rna_call_id": "32769", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788", "protein_id": "29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788", "rna_call_id": "32775", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/316dced8-9650-438f-bc92-2b6bc520d3ae_0|orf_255-749", "protein_id": "316dced8-9650-438f-bc92-2b6bc520d3ae_0|orf_255-749", "rna_call_id": "33230", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/318ba90e-fe0a-4c77-b9ea-266fa7cfe825_0|orf_820-1284", "protein_id": "318ba90e-fe0a-4c77-b9ea-266fa7cfe825_0|orf_820-1284", "rna_call_id": "33263", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788", "protein_id": "33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788", "rna_call_id": "32710", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/365e0297-f4c3-4cff-b82d-2e74ffb50d67_0|orf_254-787", "protein_id": "365e0297-f4c3-4cff-b82d-2e74ffb50d67_0|orf_254-787", "rna_call_id": "32725", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_820-1239", "protein_id": "3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_820-1239", "rna_call_id": "33249", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3f6478a4-00fb-495b-964e-ad861f3385c1_0|orf_254-787", "protein_id": "3f6478a4-00fb-495b-964e-ad861f3385c1_0|orf_254-787", "rna_call_id": "32731", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/40396650-9d04-47f6-9c35-85344bc77ef6_0|orf_254-787", "protein_id": "40396650-9d04-47f6-9c35-85344bc77ef6_0|orf_254-787", "rna_call_id": "33198", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528", "protein_id": "53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528", "rna_call_id": "33327", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-691", "protein_id": "550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-691", "rna_call_id": "32644", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_252-785", "protein_id": "56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_252-785", "rna_call_id": "33317", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5767b812-a13f-4363-aafe-c5f5c13b1544_0|orf_171-704", "protein_id": "5767b812-a13f-4363-aafe-c5f5c13b1544_0|orf_171-704", "rna_call_id": "33643", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/58ab7220-8084-4324-910f-e1ee96e1899d_0|orf_261-794", "protein_id": "58ab7220-8084-4324-910f-e1ee96e1899d_0|orf_261-794", "rna_call_id": "32485", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/58ce1a8a-e9ec-411a-97c6-207011494a1d_0|orf_256-696", "protein_id": "58ce1a8a-e9ec-411a-97c6-207011494a1d_0|orf_256-696", "rna_call_id": "32557", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_205-735", "protein_id": "6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_205-735", "rna_call_id": "33429", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_174-707", "protein_id": "649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_174-707", "rna_call_id": "33628", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-787", "protein_id": "673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-787", "rna_call_id": "32808", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/684bbc1d-fe7b-4673-a0a9-fab6b297f7bf_0|orf_256-789", "protein_id": "684bbc1d-fe7b-4673-a0a9-fab6b297f7bf_0|orf_256-789", "rna_call_id": "32762", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_262-795", "protein_id": "711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_262-795", "rna_call_id": "32482", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7d8a0ab0-be18-4fd7-b74c-f20495faadfe_0|orf_253-786", "protein_id": "7d8a0ab0-be18-4fd7-b74c-f20495faadfe_0|orf_253-786", "rna_call_id": "33314", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/822851eb-b678-496f-bffc-ca374428a9e1_0|orf_254-787", "protein_id": "822851eb-b678-496f-bffc-ca374428a9e1_0|orf_254-787", "rna_call_id": "32846", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/84d6d4a1-af1d-4e5d-9b48-eb6c143afaff_0|orf_254-787", "protein_id": "84d6d4a1-af1d-4e5d-9b48-eb6c143afaff_0|orf_254-787", "rna_call_id": "32805", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-738", "protein_id": "857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-738", "rna_call_id": "33432", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789", "protein_id": "8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789", "rna_call_id": "32799", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788", "protein_id": "8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788", "rna_call_id": "32737", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_200-733", "protein_id": "91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_200-733", "rna_call_id": "33559", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-744", "protein_id": "92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-744", "rna_call_id": "32850", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_255-788", "protein_id": "9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_255-788", "rna_call_id": "32741", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-695", "protein_id": "a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-695", "rna_call_id": "32794", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_253-786", "protein_id": "a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_253-786", "rna_call_id": "33125", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7182491-a967-4009-9b73-d535edfd9a19_0|orf_254-787", "protein_id": "a7182491-a967-4009-9b73-d535edfd9a19_0|orf_254-787", "rna_call_id": "32759", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ae536cc9-de46-4177-9de6-38040ef30174_0|orf_255-788", "protein_id": "ae536cc9-de46-4177-9de6-38040ef30174_0|orf_255-788", "rna_call_id": "32713", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788", "protein_id": "b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788", "rna_call_id": "32826", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b47ba852-1539-4eba-b9ef-fd758dc23783_0|orf_175-708", "protein_id": "b47ba852-1539-4eba-b9ef-fd758dc23783_0|orf_175-708", "rna_call_id": "33620", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573", "protein_id": "b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573", "rna_call_id": "33321", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bdc82e04-85c8-4f6a-bee5-3670460200a7_0|orf_256-789", "protein_id": "bdc82e04-85c8-4f6a-bee5-3670460200a7_0|orf_256-789", "rna_call_id": "32823", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_259-792", "protein_id": "c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_259-792", "rna_call_id": "32517", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c3babc12-4893-470e-a215-b2132f0ce159_0|orf_254-787", "protein_id": "c3babc12-4893-470e-a215-b2132f0ce159_0|orf_254-787", "rna_call_id": "32772", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c636d334-25cd-4399-92be-908849313083_0|orf_254-787", "protein_id": "c636d334-25cd-4399-92be-908849313083_0|orf_254-787", "rna_call_id": "32802", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-790", "protein_id": "c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-790", "rna_call_id": "32538", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_254-547", "protein_id": "cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_254-547", "rna_call_id": "33377", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710", "protein_id": "d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710", "rna_call_id": "33604", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_254-787", "protein_id": "d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_254-787", "rna_call_id": "32651", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791", "protein_id": "d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791", "rna_call_id": "32811", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d72ed346-e148-4306-b9df-06ced2371069_0|orf_254-787", "protein_id": "d72ed346-e148-4306-b9df-06ced2371069_0|orf_254-787", "rna_call_id": "32831", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790", "protein_id": "d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790", "rna_call_id": "32547", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-788", "protein_id": "db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-788", "rna_call_id": "32728", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e206a252-3024-46c7-8156-de253524f53a_0|orf_205-738", "protein_id": "e206a252-3024-46c7-8156-de253524f53a_0|orf_205-738", "rna_call_id": "33423", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-788", "protein_id": "e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-788", "rna_call_id": "32720", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788", "protein_id": "f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788", "rna_call_id": "32657", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788", "protein_id": "f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788", "rna_call_id": "32752", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785", "protein_id": "f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785", "rna_call_id": "32790", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/feaae8c4-4b43-4fd6-8693-00fd7e5577d0_0|orf_541-1419", "protein_id": "feaae8c4-4b43-4fd6-8693-00fd7e5577d0_0|orf_541-1419", "rna_call_id": "33652", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "isonform", "reconstruction_id": "T1-ONT/isonform/4_0_6|orf_257-790", "protein_id": "4_0_6|orf_257-790", "rna_call_id": "673", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521", "protein_id": "0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521", "rna_call_id": "110443", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-782", "protein_id": "0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-782", "rna_call_id": "108178", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788", "protein_id": "29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788", "rna_call_id": "109546", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788", "protein_id": "33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788", "rna_call_id": "108348", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_816-1235", "protein_id": "3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_816-1235", "rna_call_id": "110190", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528", "protein_id": "53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528", "rna_call_id": "110513", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-790", "protein_id": "550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-790", "rna_call_id": "109833", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_253-789", "protein_id": "56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_253-789", "rna_call_id": "110574", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_208-738", "protein_id": "6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_208-738", "rna_call_id": "110881", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_175-708", "protein_id": "649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_175-708", "rna_call_id": "111401", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-697", "protein_id": "673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-697", "rna_call_id": "109815", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_261-794", "protein_id": "711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_261-794", "rna_call_id": "107394", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-702", "protein_id": "857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-702", "rna_call_id": "110768", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789", "protein_id": "8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789", "rna_call_id": "109820", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788", "protein_id": "8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788", "rna_call_id": "108454", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_199-636", "protein_id": "91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_199-636", "rna_call_id": "111103", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-774", "protein_id": "92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-774", "rna_call_id": "108148", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_257-790", "protein_id": "9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_257-790", "rna_call_id": "109114", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-692", "protein_id": "a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-692", "rna_call_id": "108311", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_244-567", "protein_id": "a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_244-567", "rna_call_id": "109351", "amino_acid_starts": [ 20 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a7182491-a967-4009-9b73-d535edfd9a19_0|orf_252-785", "protein_id": "a7182491-a967-4009-9b73-d535edfd9a19_0|orf_252-785", "rna_call_id": "109371", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ae536cc9-de46-4177-9de6-38040ef30174_0|orf_256-789", "protein_id": "ae536cc9-de46-4177-9de6-38040ef30174_0|orf_256-789", "rna_call_id": "108279", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788", "protein_id": "b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788", "rna_call_id": "110004", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573", "protein_id": "b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573", "rna_call_id": "110475", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_260-793", "protein_id": "c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_260-793", "rna_call_id": "107462", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c3babc12-4893-470e-a215-b2132f0ce159_0|orf_253-747", "protein_id": "c3babc12-4893-470e-a215-b2132f0ce159_0|orf_253-747", "rna_call_id": "109402", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c636d334-25cd-4399-92be-908849313083_0|orf_252-788", "protein_id": "c636d334-25cd-4399-92be-908849313083_0|orf_252-788", "rna_call_id": "109949", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-694", "protein_id": "c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-694", "rna_call_id": "107698", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_256-549", "protein_id": "cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_256-549", "rna_call_id": "107574", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710", "protein_id": "d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710", "rna_call_id": "111311", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_255-689", "protein_id": "d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_255-689", "rna_call_id": "109492", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791", "protein_id": "d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791", "rna_call_id": "110016", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d72ed346-e148-4306-b9df-06ced2371069_0|orf_237-743", "protein_id": "d72ed346-e148-4306-b9df-06ced2371069_0|orf_237-743", "rna_call_id": "108902", "amino_acid_starts": [ 20 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790", "protein_id": "d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790", "rna_call_id": "107477", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-692", "protein_id": "db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-692", "rna_call_id": "107863", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e206a252-3024-46c7-8156-de253524f53a_0|orf_204-737", "protein_id": "e206a252-3024-46c7-8156-de253524f53a_0|orf_204-737", "rna_call_id": "110753", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-791", "protein_id": "e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-791", "rna_call_id": "109615", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788", "protein_id": "f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788", "rna_call_id": "107851", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788", "protein_id": "f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788", "rna_call_id": "109534", "amino_acid_starts": [ 16 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785", "protein_id": "f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785", "rna_call_id": "108491", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "assembly", "reconstruction_id": "T1-PacBio/assembly/1990|orf_180-713", "protein_id": "1990|orf_180-713", "rna_call_id": "1593", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "reconstruction_id": "T1-PacBio/assembly-ms1/1998|orf_180-713", "protein_id": "1998|orf_180-713", "rna_call_id": "3139", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "reconstruction_id": "T1-PacBio/assembly-ms1/2228|orf_181-1059", "protein_id": "2228|orf_181-1059", "rna_call_id": "3138", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "reconstruction_id": "T1-PacBio/assembly-ms1/374|orf_243-566", "protein_id": "374|orf_243-566", "rna_call_id": "3135", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "reconstruction_id": "T1-PacBio/assembly-permissive/1847|orf_535-1068", "protein_id": "1847|orf_535-1068", "rna_call_id": "9478", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "reconstruction_id": "T1-PacBio/assembly-permissive/1936|orf_168-491", "protein_id": "1936|orf_168-491", "rna_call_id": "9474", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "reconstruction_id": "T1-PacBio/assembly-permissive/286|orf_203-1081", "protein_id": "286|orf_203-1081", "rna_call_id": "9470", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "reconstruction_id": "T1-PacBio/assembly-unspliced/1999|orf_253-786", "protein_id": "1999|orf_253-786", "rna_call_id": "6329", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10239609|orf_256-789", "protein_id": "molecule/10239609|orf_256-789", "rna_call_id": "8170", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10342080|orf_230-763", "protein_id": "molecule/10342080|orf_230-763", "rna_call_id": "8354", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10599306|orf_254-787", "protein_id": "molecule/10599306|orf_254-787", "rna_call_id": "8208", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1267085|orf_225-758", "protein_id": "molecule/1267085|orf_225-758", "rna_call_id": "8373", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1359040|orf_252-785", "protein_id": "molecule/1359040|orf_252-785", "rna_call_id": "8239", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1555089|orf_263-796", "protein_id": "molecule/1555089|orf_263-796", "rna_call_id": "8303", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1603489|orf_241-774", "protein_id": "molecule/1603489|orf_241-774", "rna_call_id": "8307", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1657276|orf_254-787", "protein_id": "molecule/1657276|orf_254-787", "rna_call_id": "8204", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1796000|orf_233-766", "protein_id": "molecule/1796000|orf_233-766", "rna_call_id": "8339", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1904314|orf_231-764", "protein_id": "molecule/1904314|orf_231-764", "rna_call_id": "8360", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1962053|orf_224-757", "protein_id": "molecule/1962053|orf_224-757", "rna_call_id": "8393", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2235207|orf_255-788", "protein_id": "molecule/2235207|orf_255-788", "rna_call_id": "8206", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2432711|orf_246-779", "protein_id": "molecule/2432711|orf_246-779", "rna_call_id": "8244", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2557105|orf_225-758", "protein_id": "molecule/2557105|orf_225-758", "rna_call_id": "8375", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2721423|orf_245-778", "protein_id": "molecule/2721423|orf_245-778", "rna_call_id": "8248", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3277802|orf_225-758", "protein_id": "molecule/3277802|orf_225-758", "rna_call_id": "8374", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4086372|orf_228-761", "protein_id": "molecule/4086372|orf_228-761", "rna_call_id": "8392", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4120169|orf_245-778", "protein_id": "molecule/4120169|orf_245-778", "rna_call_id": "8250", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4505550|orf_246-779", "protein_id": "molecule/4505550|orf_246-779", "rna_call_id": "8252", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4505591|orf_236-769", "protein_id": "molecule/4505591|orf_236-769", "rna_call_id": "8323", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4541236|orf_241-774", "protein_id": "molecule/4541236|orf_241-774", "rna_call_id": "8305", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4634496|orf_244-567", "protein_id": "molecule/4634496|orf_244-567", "rna_call_id": "8262", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4701424|orf_226-759", "protein_id": "molecule/4701424|orf_226-759", "rna_call_id": "8376", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4736184|orf_255-788", "protein_id": "molecule/4736184|orf_255-788", "rna_call_id": "8210", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4928203|orf_246-779", "protein_id": "molecule/4928203|orf_246-779", "rna_call_id": "8246", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5090184|orf_224-757", "protein_id": "molecule/5090184|orf_224-757", "rna_call_id": "8390", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5373963|orf_253-786", "protein_id": "molecule/5373963|orf_253-786", "rna_call_id": "8214", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5618961|orf_252-785", "protein_id": "molecule/5618961|orf_252-785", "rna_call_id": "8241", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5811592|orf_256-789", "protein_id": "molecule/5811592|orf_256-789", "rna_call_id": "8168", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6336447|orf_254-787", "protein_id": "molecule/6336447|orf_254-787", "rna_call_id": "8212", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/638297|orf_199-732", "protein_id": "molecule/638297|orf_199-732", "rna_call_id": "8160", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6394319|orf_234-557", "protein_id": "molecule/6394319|orf_234-557", "rna_call_id": "8326", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6923299|orf_243-776", "protein_id": "molecule/6923299|orf_243-776", "rna_call_id": "8272", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7019152|orf_257-1039", "protein_id": "molecule/7019152|orf_257-1039", "rna_call_id": "8154", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7145314|orf_245-778", "protein_id": "molecule/7145314|orf_245-778", "rna_call_id": "8254", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7638135|orf_251-784", "protein_id": "molecule/7638135|orf_251-784", "rna_call_id": "8236", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7732877|orf_234-767", "protein_id": "molecule/7732877|orf_234-767", "rna_call_id": "8331", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8146590|orf_240-773", "protein_id": "molecule/8146590|orf_240-773", "rna_call_id": "8309", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8510053|orf_223-756", "protein_id": "molecule/8510053|orf_223-756", "rna_call_id": "8394", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8684285|orf_243-776", "protein_id": "molecule/8684285|orf_243-776", "rna_call_id": "8270", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8845255|orf_244-777", "protein_id": "molecule/8845255|orf_244-777", "rna_call_id": "8266", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9755126|orf_233-556", "protein_id": "molecule/9755126|orf_233-556", "rna_call_id": "8336", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "isonform", "reconstruction_id": "T1-PacBio/isonform/1_0_32|orf_255-788", "protein_id": "1_0_32|orf_255-788", "rna_call_id": "302", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10239609|orf_256-789", "protein_id": "molecule/10239609|orf_256-789", "rna_call_id": "13608", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10342080|orf_230-763", "protein_id": "molecule/10342080|orf_230-763", "rna_call_id": "14029", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10599306|orf_254-787", "protein_id": "molecule/10599306|orf_254-787", "rna_call_id": "13710", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1267085|orf_225-758", "protein_id": "molecule/1267085|orf_225-758", "rna_call_id": "14075", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1555089|orf_263-796", "protein_id": "molecule/1555089|orf_263-796", "rna_call_id": "13832", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1603489|orf_241-774", "protein_id": "molecule/1603489|orf_241-774", "rna_call_id": "13834", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1657276|orf_254-787", "protein_id": "molecule/1657276|orf_254-787", "rna_call_id": "13629", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1796000|orf_233-766", "protein_id": "molecule/1796000|orf_233-766", "rna_call_id": "13954", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1904314|orf_231-764", "protein_id": "molecule/1904314|orf_231-764", "rna_call_id": "14038", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1962053|orf_224-757", "protein_id": "molecule/1962053|orf_224-757", "rna_call_id": "14160", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2235207|orf_255-788", "protein_id": "molecule/2235207|orf_255-788", "rna_call_id": "13631", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2432711|orf_246-779", "protein_id": "molecule/2432711|orf_246-779", "rna_call_id": "13734", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2557105|orf_225-758", "protein_id": "molecule/2557105|orf_225-758", "rna_call_id": "14083", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2721423|orf_245-778", "protein_id": "molecule/2721423|orf_245-778", "rna_call_id": "13740", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3277802|orf_225-758", "protein_id": "molecule/3277802|orf_225-758", "rna_call_id": "14086", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4086372|orf_229-762", "protein_id": "molecule/4086372|orf_229-762", "rna_call_id": "14157", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4120169|orf_245-778", "protein_id": "molecule/4120169|orf_245-778", "rna_call_id": "13743", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4505550|orf_246-779", "protein_id": "molecule/4505550|orf_246-779", "rna_call_id": "13745", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4505591|orf_236-769", "protein_id": "molecule/4505591|orf_236-769", "rna_call_id": "13894", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4541236|orf_241-774", "protein_id": "molecule/4541236|orf_241-774", "rna_call_id": "13846", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4701424|orf_226-759", "protein_id": "molecule/4701424|orf_226-759", "rna_call_id": "14094", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4736184|orf_255-788", "protein_id": "molecule/4736184|orf_255-788", "rna_call_id": "13648", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4928203|orf_246-779", "protein_id": "molecule/4928203|orf_246-779", "rna_call_id": "13751", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5373963|orf_253-690", "protein_id": "molecule/5373963|orf_253-690", "rna_call_id": "13661", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5618961|orf_252-785", "protein_id": "molecule/5618961|orf_252-785", "rna_call_id": "13720", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5811592|orf_256-789", "protein_id": "molecule/5811592|orf_256-789", "rna_call_id": "13600", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6336447|orf_254-787", "protein_id": "molecule/6336447|orf_254-787", "rna_call_id": "13676", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/638297|orf_199-636", "protein_id": "molecule/638297|orf_199-636", "rna_call_id": "13574", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6394319|orf_234-557", "protein_id": "molecule/6394319|orf_234-557", "rna_call_id": "13938", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6923299|orf_243-776", "protein_id": "molecule/6923299|orf_243-776", "rna_call_id": "13788", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7019152|orf_257-871", "protein_id": "molecule/7019152|orf_257-871", "rna_call_id": "13580", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7145314|orf_245-778", "protein_id": "molecule/7145314|orf_245-778", "rna_call_id": "13760", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7638135|orf_251-784", "protein_id": "molecule/7638135|orf_251-784", "rna_call_id": "13723", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7732877|orf_234-767", "protein_id": "molecule/7732877|orf_234-767", "rna_call_id": "13943", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8146590|orf_240-773", "protein_id": "molecule/8146590|orf_240-773", "rna_call_id": "13864", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8510053|orf_223-756", "protein_id": "molecule/8510053|orf_223-756", "rna_call_id": "14173", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8684285|orf_243-737", "protein_id": "molecule/8684285|orf_243-737", "rna_call_id": "13803", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8845255|orf_244-738", "protein_id": "molecule/8845255|orf_244-738", "rna_call_id": "13780", "amino_acid_starts": [ 16 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9755126|orf_233-556", "protein_id": "molecule/9755126|orf_233-556", "rna_call_id": "13989", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ILMN", "arm": "spades", "reconstruction_id": "T2-ILMN/spades/NODE_211_length_985_cov_20.235746_g133_i0|orf_212-745", "protein_id": "NODE_211_length_985_cov_20.235746_g133_i0|orf_212-745", "rna_call_id": "3537", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly", "reconstruction_id": "T2-ONT/assembly/5092|orf_715-1248", "protein_id": "5092|orf_715-1248", "rna_call_id": "5780", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly", "reconstruction_id": "T2-ONT/assembly/727|orf_253-786", "protein_id": "727|orf_253-786", "rna_call_id": "5761", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/499|orf_540-1073", "protein_id": "499|orf_540-1073", "rna_call_id": "17872", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/672|orf_253-786", "protein_id": "672|orf_253-786", "rna_call_id": "17815", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/4173|orf_715-1248", "protein_id": "4173|orf_715-1248", "rna_call_id": "44028", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/4259|orf_255-578", "protein_id": "4259|orf_255-578", "rna_call_id": "43987", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/6493|orf_151-588", "protein_id": "6493|orf_151-588", "rna_call_id": "44031", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/683|orf_255-788", "protein_id": "683|orf_255-788", "rna_call_id": "43984", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/2526|orf_715-1248", "protein_id": "2526|orf_715-1248", "rna_call_id": "19877", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/4215|orf_345-878", "protein_id": "4215|orf_345-878", "rna_call_id": "19858", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/682|orf_253-576", "protein_id": "682|orf_253-576", "rna_call_id": "19864", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738", "protein_id": "08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738", "rna_call_id": "43855", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_193-726", "protein_id": "0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_193-726", "rna_call_id": "43865", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759", "protein_id": "1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759", "rna_call_id": "43455", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1241", "protein_id": "1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1241", "rna_call_id": "43930", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788", "protein_id": "2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788", "rna_call_id": "43137", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/435277ac-a08a-4087-a972-33412f349a53_0|orf_230-763", "protein_id": "435277ac-a08a-4087-a972-33412f349a53_0|orf_230-763", "rna_call_id": "43411", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-853", "protein_id": "48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-853", "rna_call_id": "42954", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-787", "protein_id": "4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-787", "rna_call_id": "43140", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4f3f86fe-abab-4a3b-8f9b-88228ef71576_0|orf_255-788", "protein_id": "4f3f86fe-abab-4a3b-8f9b-88228ef71576_0|orf_255-788", "rna_call_id": "43143", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_255-788", "protein_id": "549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_255-788", "rna_call_id": "43164", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/551d1949-201c-42af-90f5-8498941c9be7_0|orf_255-788", "protein_id": "551d1949-201c-42af-90f5-8498941c9be7_0|orf_255-788", "rna_call_id": "43157", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788", "protein_id": "5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788", "rna_call_id": "43154", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738", "protein_id": "5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738", "rna_call_id": "43654", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759", "protein_id": "6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759", "rna_call_id": "43458", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6f476c62-5903-4a00-8bce-bf2611594c88_0|orf_204-737", "protein_id": "6f476c62-5903-4a00-8bce-bf2611594c88_0|orf_204-737", "rna_call_id": "43823", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_545-1078", "protein_id": "72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_545-1078", "rna_call_id": "43951", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788", "protein_id": "7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788", "rna_call_id": "43134", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_255-788", "protein_id": "7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_255-788", "rna_call_id": "43151", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757", "protein_id": "7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757", "rna_call_id": "43517", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788", "protein_id": "99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788", "rna_call_id": "43121", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_204-737", "protein_id": "9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_204-737", "rna_call_id": "43656", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-788", "protein_id": "9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-788", "rna_call_id": "43146", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705", "protein_id": "a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705", "rna_call_id": "43912", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-790", "protein_id": "afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-790", "rna_call_id": "43046", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-625", "protein_id": "b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-625", "rna_call_id": "43953", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_205-738", "protein_id": "b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_205-738", "rna_call_id": "43826", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-718", "protein_id": "cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-718", "rna_call_id": "43879", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-659", "protein_id": "d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-659", "rna_call_id": "43513", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_255-788", "protein_id": "d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_255-788", "rna_call_id": "43161", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_254-691", "protein_id": "d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_254-691", "rna_call_id": "43130", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710", "protein_id": "e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710", "rna_call_id": "43888", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578", "protein_id": "e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578", "rna_call_id": "43124", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e539e289-e5a5-4d32-bfe0-76b9208410eb_0|orf_226-759", "protein_id": "e539e289-e5a5-4d32-bfe0-76b9208410eb_0|orf_226-759", "rna_call_id": "43461", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_205-738", "protein_id": "ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_205-738", "rna_call_id": "43658", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735", "protein_id": "f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735", "rna_call_id": "43779", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714", "protein_id": "fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714", "rna_call_id": "43556", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "isonform", "reconstruction_id": "T2-ONT/isonform/4_0_5|orf_256-789", "protein_id": "4_0_5|orf_256-789", "rna_call_id": "840", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738", "protein_id": "08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738", "rna_call_id": "132208", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_192-725", "protein_id": "0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_192-725", "rna_call_id": "132262", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759", "protein_id": "1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759", "rna_call_id": "130589", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1202", "protein_id": "1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1202", "rna_call_id": "132484", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788", "protein_id": "2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788", "rna_call_id": "129316", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/435277ac-a08a-4087-a972-33412f349a53_0|orf_229-762", "protein_id": "435277ac-a08a-4087-a972-33412f349a53_0|orf_229-762", "rna_call_id": "130513", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-814", "protein_id": "48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-814", "rna_call_id": "128702", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-748", "protein_id": "4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-748", "rna_call_id": "130022", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_249-746", "protein_id": "549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_249-746", "rna_call_id": "129758", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788", "protein_id": "5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788", "rna_call_id": "129264", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738", "protein_id": "5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738", "rna_call_id": "131622", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759", "protein_id": "6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759", "rna_call_id": "130784", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_547-984", "protein_id": "72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_547-984", "rna_call_id": "132521", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788", "protein_id": "7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788", "rna_call_id": "129727", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_256-789", "protein_id": "7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_256-789", "rna_call_id": "129883", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757", "protein_id": "7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757", "rna_call_id": "130846", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788", "protein_id": "99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788", "rna_call_id": "130270", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_202-639", "protein_id": "9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_202-639", "rna_call_id": "131863", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-959", "protein_id": "9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-959", "rna_call_id": "130308", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705", "protein_id": "a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705", "rna_call_id": "132465", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-751", "protein_id": "afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-751", "rna_call_id": "129131", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-529", "protein_id": "b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-529", "rna_call_id": "132527", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_204-698", "protein_id": "b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_204-698", "rna_call_id": "132095", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-715", "protein_id": "cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-715", "rna_call_id": "132316", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-461", "protein_id": "d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-461", "rna_call_id": "130868", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_254-787", "protein_id": "d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_254-787", "rna_call_id": "130062", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_251-688", "protein_id": "d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_251-688", "rna_call_id": "129258", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710", "protein_id": "e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710", "rna_call_id": "132348", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578", "protein_id": "e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578", "rna_call_id": "129720", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_207-740", "protein_id": "ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_207-740", "rna_call_id": "131678", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735", "protein_id": "f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735", "rna_call_id": "131970", "amino_acid_starts": [ 16 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714", "protein_id": "fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714", "rna_call_id": "130917", "amino_acid_starts": [ 16 ] }, { "sample": "T3-ONT", "arm": "corrected", "reconstruction_id": "T3-ONT/corrected/886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_247-780", "protein_id": "886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_247-780", "rna_call_id": "42632", "amino_acid_starts": [ 16 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_242-775", "protein_id": "886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_242-775", "rna_call_id": "144198", "amino_acid_starts": [ 16 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "assembly", "reconstruction_id": "T1-ONT/assembly/510|orf_248-784", "protein_id": "510|orf_248-784", "rna_call_id": "5557", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly", "reconstruction_id": "T1-ONT/assembly/529|orf_236-1114", "protein_id": "529|orf_236-1114", "rna_call_id": "5562", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/2722|orf_254-787", "protein_id": "2722|orf_254-787", "rna_call_id": "17008", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/6053|orf_142-1020", "protein_id": "6053|orf_142-1020", "rna_call_id": "17137", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/650|orf_254-787", "protein_id": "650|orf_254-787", "rna_call_id": "17000", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/676|orf_241-564", "protein_id": "676|orf_241-564", "rna_call_id": "17018", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/706|orf_254-787", "protein_id": "706|orf_254-787", "rna_call_id": "17005", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/94|orf_821-1240", "protein_id": "94|orf_821-1240", "rna_call_id": "16979", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/1794|orf_254-787", "protein_id": "1794|orf_254-787", "rna_call_id": "48524", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/5467|orf_536-1414", "protein_id": "5467|orf_536-1414", "rna_call_id": "48650", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/6161|orf_254-787", "protein_id": "6161|orf_254-787", "rna_call_id": "48529", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/687|orf_254-787", "protein_id": "687|orf_254-787", "rna_call_id": "48520", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/711|orf_241-564", "protein_id": "711|orf_241-564", "rna_call_id": "48537", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/84|orf_824-1243", "protein_id": "84|orf_824-1243", "rna_call_id": "48499", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T1-ONT/assembly-unspliced/5172|orf_179-712", "protein_id": "5172|orf_179-712", "rna_call_id": "21913", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T1-ONT/assembly-unspliced/550|orf_236-1114", "protein_id": "550|orf_236-1114", "rna_call_id": "21898", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T1-ONT/assembly-unspliced/703|orf_241-564", "protein_id": "703|orf_241-564", "rna_call_id": "21894", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521", "protein_id": "0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521", "rna_call_id": "33309", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-788", "protein_id": "0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-788", "rna_call_id": "32769", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788", "protein_id": "29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788", "rna_call_id": "32775", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/316dced8-9650-438f-bc92-2b6bc520d3ae_0|orf_255-749", "protein_id": "316dced8-9650-438f-bc92-2b6bc520d3ae_0|orf_255-749", "rna_call_id": "33230", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/318ba90e-fe0a-4c77-b9ea-266fa7cfe825_0|orf_820-1284", "protein_id": "318ba90e-fe0a-4c77-b9ea-266fa7cfe825_0|orf_820-1284", "rna_call_id": "33263", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788", "protein_id": "33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788", "rna_call_id": "32710", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/365e0297-f4c3-4cff-b82d-2e74ffb50d67_0|orf_254-787", "protein_id": "365e0297-f4c3-4cff-b82d-2e74ffb50d67_0|orf_254-787", "rna_call_id": "32725", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_820-1239", "protein_id": "3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_820-1239", "rna_call_id": "33249", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3b427a12-e877-4e70-8ab2-614b85d656b3_0|orf_255-788", "protein_id": "3b427a12-e877-4e70-8ab2-614b85d656b3_0|orf_255-788", "rna_call_id": "32756", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3f6478a4-00fb-495b-964e-ad861f3385c1_0|orf_254-787", "protein_id": "3f6478a4-00fb-495b-964e-ad861f3385c1_0|orf_254-787", "rna_call_id": "32731", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/40396650-9d04-47f6-9c35-85344bc77ef6_0|orf_254-787", "protein_id": "40396650-9d04-47f6-9c35-85344bc77ef6_0|orf_254-787", "rna_call_id": "33198", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528", "protein_id": "53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528", "rna_call_id": "33327", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-691", "protein_id": "550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-691", "rna_call_id": "32644", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_252-785", "protein_id": "56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_252-785", "rna_call_id": "33317", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5767b812-a13f-4363-aafe-c5f5c13b1544_0|orf_171-704", "protein_id": "5767b812-a13f-4363-aafe-c5f5c13b1544_0|orf_171-704", "rna_call_id": "33643", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/58ab7220-8084-4324-910f-e1ee96e1899d_0|orf_261-794", "protein_id": "58ab7220-8084-4324-910f-e1ee96e1899d_0|orf_261-794", "rna_call_id": "32485", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/58ce1a8a-e9ec-411a-97c6-207011494a1d_0|orf_256-696", "protein_id": "58ce1a8a-e9ec-411a-97c6-207011494a1d_0|orf_256-696", "rna_call_id": "32557", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_205-735", "protein_id": "6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_205-735", "rna_call_id": "33429", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_174-707", "protein_id": "649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_174-707", "rna_call_id": "33628", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-787", "protein_id": "673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-787", "rna_call_id": "32808", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/684bbc1d-fe7b-4673-a0a9-fab6b297f7bf_0|orf_256-789", "protein_id": "684bbc1d-fe7b-4673-a0a9-fab6b297f7bf_0|orf_256-789", "rna_call_id": "32762", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_262-795", "protein_id": "711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_262-795", "rna_call_id": "32482", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7d8a0ab0-be18-4fd7-b74c-f20495faadfe_0|orf_253-786", "protein_id": "7d8a0ab0-be18-4fd7-b74c-f20495faadfe_0|orf_253-786", "rna_call_id": "33314", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/822851eb-b678-496f-bffc-ca374428a9e1_0|orf_254-787", "protein_id": "822851eb-b678-496f-bffc-ca374428a9e1_0|orf_254-787", "rna_call_id": "32846", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/84d6d4a1-af1d-4e5d-9b48-eb6c143afaff_0|orf_254-787", "protein_id": "84d6d4a1-af1d-4e5d-9b48-eb6c143afaff_0|orf_254-787", "rna_call_id": "32805", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-738", "protein_id": "857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-738", "rna_call_id": "33432", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789", "protein_id": "8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789", "rna_call_id": "32799", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788", "protein_id": "8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788", "rna_call_id": "32737", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_200-733", "protein_id": "91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_200-733", "rna_call_id": "33559", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-744", "protein_id": "92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-744", "rna_call_id": "32850", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_255-788", "protein_id": "9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_255-788", "rna_call_id": "32741", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-695", "protein_id": "a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-695", "rna_call_id": "32794", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_253-786", "protein_id": "a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_253-786", "rna_call_id": "33125", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7182491-a967-4009-9b73-d535edfd9a19_0|orf_254-787", "protein_id": "a7182491-a967-4009-9b73-d535edfd9a19_0|orf_254-787", "rna_call_id": "32759", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ae536cc9-de46-4177-9de6-38040ef30174_0|orf_255-788", "protein_id": "ae536cc9-de46-4177-9de6-38040ef30174_0|orf_255-788", "rna_call_id": "32713", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788", "protein_id": "b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788", "rna_call_id": "32826", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b47ba852-1539-4eba-b9ef-fd758dc23783_0|orf_175-708", "protein_id": "b47ba852-1539-4eba-b9ef-fd758dc23783_0|orf_175-708", "rna_call_id": "33620", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573", "protein_id": "b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573", "rna_call_id": "33321", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bdc82e04-85c8-4f6a-bee5-3670460200a7_0|orf_256-789", "protein_id": "bdc82e04-85c8-4f6a-bee5-3670460200a7_0|orf_256-789", "rna_call_id": "32823", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_259-792", "protein_id": "c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_259-792", "rna_call_id": "32517", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c3babc12-4893-470e-a215-b2132f0ce159_0|orf_254-787", "protein_id": "c3babc12-4893-470e-a215-b2132f0ce159_0|orf_254-787", "rna_call_id": "32772", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c636d334-25cd-4399-92be-908849313083_0|orf_254-787", "protein_id": "c636d334-25cd-4399-92be-908849313083_0|orf_254-787", "rna_call_id": "32802", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-790", "protein_id": "c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-790", "rna_call_id": "32538", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_254-547", "protein_id": "cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_254-547", "rna_call_id": "33377", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710", "protein_id": "d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710", "rna_call_id": "33604", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_254-787", "protein_id": "d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_254-787", "rna_call_id": "32651", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791", "protein_id": "d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791", "rna_call_id": "32811", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d72ed346-e148-4306-b9df-06ced2371069_0|orf_254-787", "protein_id": "d72ed346-e148-4306-b9df-06ced2371069_0|orf_254-787", "rna_call_id": "32831", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790", "protein_id": "d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790", "rna_call_id": "32547", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-788", "protein_id": "db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-788", "rna_call_id": "32728", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e206a252-3024-46c7-8156-de253524f53a_0|orf_205-738", "protein_id": "e206a252-3024-46c7-8156-de253524f53a_0|orf_205-738", "rna_call_id": "33423", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-788", "protein_id": "e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-788", "rna_call_id": "32720", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788", "protein_id": "f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788", "rna_call_id": "32657", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788", "protein_id": "f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788", "rna_call_id": "32752", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785", "protein_id": "f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785", "rna_call_id": "32790", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/feaae8c4-4b43-4fd6-8693-00fd7e5577d0_0|orf_541-1419", "protein_id": "feaae8c4-4b43-4fd6-8693-00fd7e5577d0_0|orf_541-1419", "rna_call_id": "33652", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "isonform", "reconstruction_id": "T1-ONT/isonform/4_0_6|orf_257-790", "protein_id": "4_0_6|orf_257-790", "rna_call_id": "673", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521", "protein_id": "0c1e8f35-67e0-4650-b8c9-f2dde2d2b329_0|orf_252-521", "rna_call_id": "110443", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-782", "protein_id": "0d0b87eb-9619-4212-8020-2a448987094d_0|orf_255-782", "rna_call_id": "108178", "variant_amino_acid_start": 22 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788", "protein_id": "29e65bb4-9269-468a-99f2-1e1474563c16_0|orf_255-788", "rna_call_id": "109546", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788", "protein_id": "33d4b3a7-12cb-47d5-a61f-4b3a521e3a60_0|orf_255-788", "rna_call_id": "108348", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_816-1235", "protein_id": "3b02b16d-8f0b-4197-9b64-596e71692dd5_0|orf_816-1235", "rna_call_id": "110190", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3b427a12-e877-4e70-8ab2-614b85d656b3_0|orf_255-788", "protein_id": "3b427a12-e877-4e70-8ab2-614b85d656b3_0|orf_255-788", "rna_call_id": "110013", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528", "protein_id": "53e69597-b189-467e-a12e-5bbc002afcbd_0|orf_253-528", "rna_call_id": "110513", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-790", "protein_id": "550fbd83-3719-42b9-9c09-c90813c7312d_0|orf_254-790", "rna_call_id": "109833", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_253-789", "protein_id": "56661f56-983d-47ec-be9c-49b7d04d74e5_0|orf_253-789", "rna_call_id": "110574", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/58ce1a8a-e9ec-411a-97c6-207011494a1d_0|orf_256-792", "protein_id": "58ce1a8a-e9ec-411a-97c6-207011494a1d_0|orf_256-792", "rna_call_id": "107676", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_208-738", "protein_id": "6045d4a3-6d57-415f-bc80-c96e163e429a_0|orf_208-738", "rna_call_id": "110881", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_175-708", "protein_id": "649a67eb-6a26-410b-afd3-48fa669ba4a6_0|orf_175-708", "rna_call_id": "111401", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-697", "protein_id": "673eb549-c2d6-4f99-a62b-a0c0f90fddd6_0|orf_254-697", "rna_call_id": "109815", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_261-794", "protein_id": "711c42fa-1d1f-4eff-8891-7b8a755c9f77_0|orf_261-794", "rna_call_id": "107394", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-702", "protein_id": "857be1b6-d011-4e5a-829c-5307834037d3_0|orf_205-702", "rna_call_id": "110768", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789", "protein_id": "8797d71a-7fe6-4278-9098-ba64ee212830_0|orf_256-789", "rna_call_id": "109820", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788", "protein_id": "8f102976-5ae4-4ac5-8706-24186b45a310_0|orf_255-788", "rna_call_id": "108454", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_199-636", "protein_id": "91f140e0-e7c6-4f9f-bcea-ac5770d8886f_0|orf_199-636", "rna_call_id": "111103", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-774", "protein_id": "92d2dd1b-f907-4098-9c62-023466713c96_0|orf_253-774", "rna_call_id": "108148", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/93badf9d-4eab-4d97-9d70-50b622c5da9c_0|orf_176-412", "protein_id": "93badf9d-4eab-4d97-9d70-50b622c5da9c_0|orf_176-412", "rna_call_id": "111362", "variant_amino_acid_start": 23 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_257-790", "protein_id": "9a3d16a7-8142-4eb0-9c70-b3bbb46453f4_0|orf_257-790", "rna_call_id": "109114", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-692", "protein_id": "a41bca0b-5c22-447b-ab85-b77e050352b3_0|orf_255-692", "rna_call_id": "108311", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_244-567", "protein_id": "a4a96646-0b79-4fda-8433-40fef5f878b3_0|orf_244-567", "rna_call_id": "109351", "variant_amino_acid_start": 28 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a7182491-a967-4009-9b73-d535edfd9a19_0|orf_252-785", "protein_id": "a7182491-a967-4009-9b73-d535edfd9a19_0|orf_252-785", "rna_call_id": "109371", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ae536cc9-de46-4177-9de6-38040ef30174_0|orf_256-789", "protein_id": "ae536cc9-de46-4177-9de6-38040ef30174_0|orf_256-789", "rna_call_id": "108279", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788", "protein_id": "b1011e0d-ed27-4ad3-b136-21a66589b755_0|orf_255-788", "rna_call_id": "110004", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b47ba852-1539-4eba-b9ef-fd758dc23783_0|orf_176-712", "protein_id": "b47ba852-1539-4eba-b9ef-fd758dc23783_0|orf_176-712", "rna_call_id": "111350", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573", "protein_id": "b75390d7-4cee-4b23-9ab8-2d91e9a9f1a9_0|orf_253-573", "rna_call_id": "110475", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_260-793", "protein_id": "c28864b5-4d1e-41cc-b355-b5c314f79a5b_0|orf_260-793", "rna_call_id": "107462", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c3babc12-4893-470e-a215-b2132f0ce159_0|orf_253-747", "protein_id": "c3babc12-4893-470e-a215-b2132f0ce159_0|orf_253-747", "rna_call_id": "109402", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c636d334-25cd-4399-92be-908849313083_0|orf_252-788", "protein_id": "c636d334-25cd-4399-92be-908849313083_0|orf_252-788", "rna_call_id": "109949", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-694", "protein_id": "c65b42f5-cf8c-49f5-a2c3-2ed3cf05efb3_0|orf_257-694", "rna_call_id": "107698", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_256-549", "protein_id": "cf9c43fb-5056-4909-b5f7-e7773cbab6df_0|orf_256-549", "rna_call_id": "107574", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710", "protein_id": "d66ffc24-44cb-4065-abbf-8284a62b7578_0|orf_177-710", "rna_call_id": "111311", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_255-689", "protein_id": "d6d3dbfc-2ed6-4fe4-a170-ac883b98501b_0|orf_255-689", "rna_call_id": "109492", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791", "protein_id": "d6dcbd66-f057-45d4-9f53-dd163e37ad82_0|orf_255-791", "rna_call_id": "110016", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d72ed346-e148-4306-b9df-06ced2371069_0|orf_237-743", "protein_id": "d72ed346-e148-4306-b9df-06ced2371069_0|orf_237-743", "rna_call_id": "108902", "variant_amino_acid_start": 28 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790", "protein_id": "d90dc1fb-8301-452d-827a-375f6828e9b2_0|orf_257-790", "rna_call_id": "107477", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-692", "protein_id": "db2318e3-376b-4b78-89a9-8ccd81acafcd_0|orf_255-692", "rna_call_id": "107863", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e206a252-3024-46c7-8156-de253524f53a_0|orf_204-737", "protein_id": "e206a252-3024-46c7-8156-de253524f53a_0|orf_204-737", "rna_call_id": "110753", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-791", "protein_id": "e5b59c0d-8ca6-4fc3-b2a7-d3c81f3a7c85_0|orf_255-791", "rna_call_id": "109615", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788", "protein_id": "f020c86a-4453-486d-be47-b8bb7a1222bd_0|orf_255-788", "rna_call_id": "107851", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788", "protein_id": "f1b82c80-8e23-48b3-b981-7b3c5b989880_0|orf_255-788", "rna_call_id": "109534", "variant_amino_acid_start": 24 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785", "protein_id": "f1f4e399-05b2-4dd7-b51b-ebca63ef8771_0|orf_255-785", "rna_call_id": "108491", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "assembly", "reconstruction_id": "T1-PacBio/assembly/1990|orf_180-713", "protein_id": "1990|orf_180-713", "rna_call_id": "1593", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "reconstruction_id": "T1-PacBio/assembly-ms1/1998|orf_180-713", "protein_id": "1998|orf_180-713", "rna_call_id": "3139", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "reconstruction_id": "T1-PacBio/assembly-ms1/2228|orf_181-1059", "protein_id": "2228|orf_181-1059", "rna_call_id": "3138", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "reconstruction_id": "T1-PacBio/assembly-ms1/374|orf_243-566", "protein_id": "374|orf_243-566", "rna_call_id": "3135", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "reconstruction_id": "T1-PacBio/assembly-permissive/1847|orf_535-1068", "protein_id": "1847|orf_535-1068", "rna_call_id": "9478", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "reconstruction_id": "T1-PacBio/assembly-permissive/1936|orf_168-491", "protein_id": "1936|orf_168-491", "rna_call_id": "9474", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "reconstruction_id": "T1-PacBio/assembly-permissive/286|orf_203-1081", "protein_id": "286|orf_203-1081", "rna_call_id": "9470", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "reconstruction_id": "T1-PacBio/assembly-unspliced/1999|orf_253-786", "protein_id": "1999|orf_253-786", "rna_call_id": "6329", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10239609|orf_256-789", "protein_id": "molecule/10239609|orf_256-789", "rna_call_id": "8170", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10342080|orf_230-763", "protein_id": "molecule/10342080|orf_230-763", "rna_call_id": "8354", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10599306|orf_254-787", "protein_id": "molecule/10599306|orf_254-787", "rna_call_id": "8208", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1214036|orf_234-767", "protein_id": "molecule/1214036|orf_234-767", "rna_call_id": "8330", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1267085|orf_225-758", "protein_id": "molecule/1267085|orf_225-758", "rna_call_id": "8373", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1359040|orf_252-785", "protein_id": "molecule/1359040|orf_252-785", "rna_call_id": "8239", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1555089|orf_263-796", "protein_id": "molecule/1555089|orf_263-796", "rna_call_id": "8303", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1603489|orf_241-774", "protein_id": "molecule/1603489|orf_241-774", "rna_call_id": "8307", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1657276|orf_254-787", "protein_id": "molecule/1657276|orf_254-787", "rna_call_id": "8204", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1796000|orf_233-766", "protein_id": "molecule/1796000|orf_233-766", "rna_call_id": "8339", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1904314|orf_231-764", "protein_id": "molecule/1904314|orf_231-764", "rna_call_id": "8360", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1962053|orf_224-757", "protein_id": "molecule/1962053|orf_224-757", "rna_call_id": "8393", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2235207|orf_255-788", "protein_id": "molecule/2235207|orf_255-788", "rna_call_id": "8206", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2432711|orf_246-779", "protein_id": "molecule/2432711|orf_246-779", "rna_call_id": "8244", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2557105|orf_225-758", "protein_id": "molecule/2557105|orf_225-758", "rna_call_id": "8375", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2721423|orf_245-778", "protein_id": "molecule/2721423|orf_245-778", "rna_call_id": "8248", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3277802|orf_225-758", "protein_id": "molecule/3277802|orf_225-758", "rna_call_id": "8374", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4086372|orf_228-761", "protein_id": "molecule/4086372|orf_228-761", "rna_call_id": "8392", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4120169|orf_245-778", "protein_id": "molecule/4120169|orf_245-778", "rna_call_id": "8250", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4505550|orf_246-779", "protein_id": "molecule/4505550|orf_246-779", "rna_call_id": "8252", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4505591|orf_236-769", "protein_id": "molecule/4505591|orf_236-769", "rna_call_id": "8323", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4541236|orf_241-774", "protein_id": "molecule/4541236|orf_241-774", "rna_call_id": "8305", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4634496|orf_244-567", "protein_id": "molecule/4634496|orf_244-567", "rna_call_id": "8262", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4701424|orf_226-759", "protein_id": "molecule/4701424|orf_226-759", "rna_call_id": "8376", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4736184|orf_255-788", "protein_id": "molecule/4736184|orf_255-788", "rna_call_id": "8210", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4928203|orf_246-779", "protein_id": "molecule/4928203|orf_246-779", "rna_call_id": "8246", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5090184|orf_224-757", "protein_id": "molecule/5090184|orf_224-757", "rna_call_id": "8390", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5373963|orf_253-786", "protein_id": "molecule/5373963|orf_253-786", "rna_call_id": "8214", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5618961|orf_252-785", "protein_id": "molecule/5618961|orf_252-785", "rna_call_id": "8241", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5811592|orf_256-789", "protein_id": "molecule/5811592|orf_256-789", "rna_call_id": "8168", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6336447|orf_254-787", "protein_id": "molecule/6336447|orf_254-787", "rna_call_id": "8212", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/638297|orf_199-732", "protein_id": "molecule/638297|orf_199-732", "rna_call_id": "8160", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6394319|orf_234-557", "protein_id": "molecule/6394319|orf_234-557", "rna_call_id": "8326", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6923299|orf_243-776", "protein_id": "molecule/6923299|orf_243-776", "rna_call_id": "8272", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7019152|orf_257-1039", "protein_id": "molecule/7019152|orf_257-1039", "rna_call_id": "8154", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7145314|orf_245-778", "protein_id": "molecule/7145314|orf_245-778", "rna_call_id": "8254", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7638135|orf_251-784", "protein_id": "molecule/7638135|orf_251-784", "rna_call_id": "8236", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7732877|orf_234-767", "protein_id": "molecule/7732877|orf_234-767", "rna_call_id": "8331", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8146590|orf_240-773", "protein_id": "molecule/8146590|orf_240-773", "rna_call_id": "8309", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8510053|orf_223-756", "protein_id": "molecule/8510053|orf_223-756", "rna_call_id": "8394", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8684285|orf_243-776", "protein_id": "molecule/8684285|orf_243-776", "rna_call_id": "8270", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8845255|orf_244-777", "protein_id": "molecule/8845255|orf_244-777", "rna_call_id": "8266", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9755126|orf_233-556", "protein_id": "molecule/9755126|orf_233-556", "rna_call_id": "8336", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "isonform", "reconstruction_id": "T1-PacBio/isonform/1_0_32|orf_255-788", "protein_id": "1_0_32|orf_255-788", "rna_call_id": "302", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10239609|orf_256-789", "protein_id": "molecule/10239609|orf_256-789", "rna_call_id": "13608", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10342080|orf_230-763", "protein_id": "molecule/10342080|orf_230-763", "rna_call_id": "14029", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10599306|orf_254-787", "protein_id": "molecule/10599306|orf_254-787", "rna_call_id": "13710", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1214036|orf_234-767", "protein_id": "molecule/1214036|orf_234-767", "rna_call_id": "13916", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1267085|orf_225-758", "protein_id": "molecule/1267085|orf_225-758", "rna_call_id": "14075", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1555089|orf_263-796", "protein_id": "molecule/1555089|orf_263-796", "rna_call_id": "13832", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1603489|orf_241-774", "protein_id": "molecule/1603489|orf_241-774", "rna_call_id": "13834", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1657276|orf_254-787", "protein_id": "molecule/1657276|orf_254-787", "rna_call_id": "13629", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1796000|orf_233-766", "protein_id": "molecule/1796000|orf_233-766", "rna_call_id": "13954", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1904314|orf_231-764", "protein_id": "molecule/1904314|orf_231-764", "rna_call_id": "14038", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1962053|orf_224-757", "protein_id": "molecule/1962053|orf_224-757", "rna_call_id": "14160", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2235207|orf_255-788", "protein_id": "molecule/2235207|orf_255-788", "rna_call_id": "13631", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2432711|orf_246-779", "protein_id": "molecule/2432711|orf_246-779", "rna_call_id": "13734", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2557105|orf_225-758", "protein_id": "molecule/2557105|orf_225-758", "rna_call_id": "14083", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2721423|orf_245-778", "protein_id": "molecule/2721423|orf_245-778", "rna_call_id": "13740", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3277802|orf_225-758", "protein_id": "molecule/3277802|orf_225-758", "rna_call_id": "14086", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4086372|orf_229-762", "protein_id": "molecule/4086372|orf_229-762", "rna_call_id": "14157", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4120169|orf_245-778", "protein_id": "molecule/4120169|orf_245-778", "rna_call_id": "13743", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4505550|orf_246-779", "protein_id": "molecule/4505550|orf_246-779", "rna_call_id": "13745", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4505591|orf_236-769", "protein_id": "molecule/4505591|orf_236-769", "rna_call_id": "13894", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4541236|orf_241-774", "protein_id": "molecule/4541236|orf_241-774", "rna_call_id": "13846", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4701424|orf_226-759", "protein_id": "molecule/4701424|orf_226-759", "rna_call_id": "14094", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4736184|orf_255-788", "protein_id": "molecule/4736184|orf_255-788", "rna_call_id": "13648", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4928203|orf_246-779", "protein_id": "molecule/4928203|orf_246-779", "rna_call_id": "13751", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5373963|orf_253-690", "protein_id": "molecule/5373963|orf_253-690", "rna_call_id": "13661", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5618961|orf_252-785", "protein_id": "molecule/5618961|orf_252-785", "rna_call_id": "13720", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5811592|orf_256-789", "protein_id": "molecule/5811592|orf_256-789", "rna_call_id": "13600", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6336447|orf_254-787", "protein_id": "molecule/6336447|orf_254-787", "rna_call_id": "13676", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/638297|orf_199-636", "protein_id": "molecule/638297|orf_199-636", "rna_call_id": "13574", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6394319|orf_234-557", "protein_id": "molecule/6394319|orf_234-557", "rna_call_id": "13938", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6923299|orf_243-776", "protein_id": "molecule/6923299|orf_243-776", "rna_call_id": "13788", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7019152|orf_257-871", "protein_id": "molecule/7019152|orf_257-871", "rna_call_id": "13580", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7145314|orf_245-778", "protein_id": "molecule/7145314|orf_245-778", "rna_call_id": "13760", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7638135|orf_251-784", "protein_id": "molecule/7638135|orf_251-784", "rna_call_id": "13723", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7732877|orf_234-767", "protein_id": "molecule/7732877|orf_234-767", "rna_call_id": "13943", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8146590|orf_240-773", "protein_id": "molecule/8146590|orf_240-773", "rna_call_id": "13864", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8510053|orf_223-756", "protein_id": "molecule/8510053|orf_223-756", "rna_call_id": "14173", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8684285|orf_243-737", "protein_id": "molecule/8684285|orf_243-737", "rna_call_id": "13803", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8845255|orf_244-738", "protein_id": "molecule/8845255|orf_244-738", "rna_call_id": "13780", "variant_amino_acid_start": 24 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9755126|orf_233-556", "protein_id": "molecule/9755126|orf_233-556", "rna_call_id": "13989", "variant_amino_acid_start": 24 }, { "sample": "T2-ILMN", "arm": "spades", "reconstruction_id": "T2-ILMN/spades/NODE_211_length_985_cov_20.235746_g133_i0|orf_212-745", "protein_id": "NODE_211_length_985_cov_20.235746_g133_i0|orf_212-745", "rna_call_id": "3537", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly", "reconstruction_id": "T2-ONT/assembly/5092|orf_715-1248", "protein_id": "5092|orf_715-1248", "rna_call_id": "5780", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly", "reconstruction_id": "T2-ONT/assembly/727|orf_253-786", "protein_id": "727|orf_253-786", "rna_call_id": "5761", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/499|orf_540-1073", "protein_id": "499|orf_540-1073", "rna_call_id": "17872", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/672|orf_253-786", "protein_id": "672|orf_253-786", "rna_call_id": "17815", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/4173|orf_715-1248", "protein_id": "4173|orf_715-1248", "rna_call_id": "44028", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/4259|orf_255-578", "protein_id": "4259|orf_255-578", "rna_call_id": "43987", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/6493|orf_151-588", "protein_id": "6493|orf_151-588", "rna_call_id": "44031", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/683|orf_255-788", "protein_id": "683|orf_255-788", "rna_call_id": "43984", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/2526|orf_715-1248", "protein_id": "2526|orf_715-1248", "rna_call_id": "19877", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/4215|orf_345-878", "protein_id": "4215|orf_345-878", "rna_call_id": "19858", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/682|orf_253-576", "protein_id": "682|orf_253-576", "rna_call_id": "19864", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738", "protein_id": "08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738", "rna_call_id": "43855", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_193-726", "protein_id": "0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_193-726", "rna_call_id": "43865", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759", "protein_id": "1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759", "rna_call_id": "43455", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1241", "protein_id": "1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1241", "rna_call_id": "43930", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788", "protein_id": "2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788", "rna_call_id": "43137", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/435277ac-a08a-4087-a972-33412f349a53_0|orf_230-763", "protein_id": "435277ac-a08a-4087-a972-33412f349a53_0|orf_230-763", "rna_call_id": "43411", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-853", "protein_id": "48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-853", "rna_call_id": "42954", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-787", "protein_id": "4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-787", "rna_call_id": "43140", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4f3f86fe-abab-4a3b-8f9b-88228ef71576_0|orf_255-788", "protein_id": "4f3f86fe-abab-4a3b-8f9b-88228ef71576_0|orf_255-788", "rna_call_id": "43143", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_255-788", "protein_id": "549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_255-788", "rna_call_id": "43164", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/551d1949-201c-42af-90f5-8498941c9be7_0|orf_255-788", "protein_id": "551d1949-201c-42af-90f5-8498941c9be7_0|orf_255-788", "rna_call_id": "43157", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788", "protein_id": "5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788", "rna_call_id": "43154", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738", "protein_id": "5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738", "rna_call_id": "43654", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759", "protein_id": "6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759", "rna_call_id": "43458", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6f476c62-5903-4a00-8bce-bf2611594c88_0|orf_204-737", "protein_id": "6f476c62-5903-4a00-8bce-bf2611594c88_0|orf_204-737", "rna_call_id": "43823", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_545-1078", "protein_id": "72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_545-1078", "rna_call_id": "43951", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788", "protein_id": "7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788", "rna_call_id": "43134", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_255-788", "protein_id": "7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_255-788", "rna_call_id": "43151", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757", "protein_id": "7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757", "rna_call_id": "43517", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788", "protein_id": "99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788", "rna_call_id": "43121", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_204-737", "protein_id": "9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_204-737", "rna_call_id": "43656", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-788", "protein_id": "9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-788", "rna_call_id": "43146", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705", "protein_id": "a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705", "rna_call_id": "43912", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-790", "protein_id": "afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-790", "rna_call_id": "43046", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-625", "protein_id": "b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-625", "rna_call_id": "43953", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_205-738", "protein_id": "b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_205-738", "rna_call_id": "43826", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-718", "protein_id": "cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-718", "rna_call_id": "43879", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-659", "protein_id": "d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-659", "rna_call_id": "43513", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_255-788", "protein_id": "d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_255-788", "rna_call_id": "43161", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_254-691", "protein_id": "d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_254-691", "rna_call_id": "43130", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710", "protein_id": "e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710", "rna_call_id": "43888", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578", "protein_id": "e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578", "rna_call_id": "43124", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e539e289-e5a5-4d32-bfe0-76b9208410eb_0|orf_226-759", "protein_id": "e539e289-e5a5-4d32-bfe0-76b9208410eb_0|orf_226-759", "rna_call_id": "43461", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_205-738", "protein_id": "ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_205-738", "rna_call_id": "43658", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735", "protein_id": "f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735", "rna_call_id": "43779", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714", "protein_id": "fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714", "rna_call_id": "43556", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "isonform", "reconstruction_id": "T2-ONT/isonform/4_0_5|orf_256-789", "protein_id": "4_0_5|orf_256-789", "rna_call_id": "840", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738", "protein_id": "08091592-4636-4143-8655-e1f2b0139f2a_0|orf_205-738", "rna_call_id": "132208", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_192-725", "protein_id": "0943fa72-99e6-4cce-b8b1-dc7bd8857a30_0|orf_192-725", "rna_call_id": "132262", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759", "protein_id": "1bbbc247-dc0e-4570-9326-2d15992638f7_0|orf_226-759", "rna_call_id": "130589", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1202", "protein_id": "1f341960-0415-4661-9356-2c39e85c11cd_0|orf_708-1202", "rna_call_id": "132484", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788", "protein_id": "2f94ab53-3ac3-45a8-b1ab-04a642c5ee1b_1|orf_255-788", "rna_call_id": "129316", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/435277ac-a08a-4087-a972-33412f349a53_0|orf_229-762", "protein_id": "435277ac-a08a-4087-a972-33412f349a53_0|orf_229-762", "rna_call_id": "130513", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-814", "protein_id": "48b518aa-fc68-4847-bf81-e5d9f2f02b4a_0|orf_320-814", "rna_call_id": "128702", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-748", "protein_id": "4dcef516-73bf-4337-bc65-15c2d3364bc4_0|orf_254-748", "rna_call_id": "130022", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_249-746", "protein_id": "549e923f-d5f4-49f4-b90c-004d53f0356c_0|orf_249-746", "rna_call_id": "129758", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788", "protein_id": "5b8fe335-e846-451b-af71-4f4666ab9166_0|orf_255-788", "rna_call_id": "129264", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738", "protein_id": "5e1ed5e2-22af-4a4e-8434-ab7048c9e430_0|orf_205-738", "rna_call_id": "131622", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759", "protein_id": "6bfdfcc0-cf4c-4b45-8529-5db7ca66b5b9_0|orf_226-759", "rna_call_id": "130784", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_547-984", "protein_id": "72f6cd9a-6777-4835-8035-227c2a7ada1e_0|orf_547-984", "rna_call_id": "132521", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788", "protein_id": "7be6d50a-36d9-4949-8eb8-0c215db5716c_0|orf_255-788", "rna_call_id": "129727", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_256-789", "protein_id": "7e37e918-154e-4ec4-91a6-900bfb53e5fe_0|orf_256-789", "rna_call_id": "129883", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757", "protein_id": "7e963c60-218f-470d-8941-384bd78b1f6d_0|orf_224-757", "rna_call_id": "130846", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788", "protein_id": "99902af4-8363-4949-a45d-946d69c801b9_0|orf_255-788", "rna_call_id": "130270", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_202-639", "protein_id": "9c35e204-1c23-4cc4-a4bd-4b45bd2c6582_0|orf_202-639", "rna_call_id": "131863", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-959", "protein_id": "9f05ad92-1417-40bc-b6e7-385f3d237e2e_0|orf_255-959", "rna_call_id": "130308", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705", "protein_id": "a65f4c7c-2846-43db-a136-b57e56a01091_0|orf_172-705", "rna_call_id": "132465", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-751", "protein_id": "afa81104-abc9-4c87-8869-3893d4db9d25_0|orf_257-751", "rna_call_id": "129131", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-529", "protein_id": "b2ccce5a-d32f-463f-80b3-96dab1d44354_0|orf_92-529", "rna_call_id": "132527", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_204-698", "protein_id": "b7a548fd-0a83-4d9e-b511-e83bcb26d7fa_0|orf_204-698", "rna_call_id": "132095", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-715", "protein_id": "cb1283de-27eb-4e7e-87c9-90893f6225a6_0|orf_185-715", "rna_call_id": "132316", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-461", "protein_id": "d3a0d358-ce14-4890-8488-78c7c28baa4c_0|orf_225-461", "rna_call_id": "130868", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_254-787", "protein_id": "d48d8f52-391c-4791-bec8-5d07e0036437_0|orf_254-787", "rna_call_id": "130062", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_251-688", "protein_id": "d827567d-49f0-442b-bcd6-e3e35a742162_0|orf_251-688", "rna_call_id": "129258", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710", "protein_id": "e04ee817-4080-4ba9-b8d7-f02b393114df_0|orf_177-710", "rna_call_id": "132348", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578", "protein_id": "e2ec7dd8-916f-49b0-b853-340d62865440_0|orf_255-578", "rna_call_id": "129720", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_207-740", "protein_id": "ebff60f3-37f0-4bf7-8358-e100e0f8e2e9_0|orf_207-740", "rna_call_id": "131678", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735", "protein_id": "f1508588-20dc-4575-9fc5-16e59c420874_0|orf_202-735", "rna_call_id": "131970", "variant_amino_acid_start": 24 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714", "protein_id": "fea3014d-99a0-42ce-b0e0-0b59e0670cac_0|orf_220-714", "rna_call_id": "130917", "variant_amino_acid_start": 24 }, { "sample": "T3-ONT", "arm": "corrected", "reconstruction_id": "T3-ONT/corrected/886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_247-780", "protein_id": "886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_247-780", "rna_call_id": "42632", "variant_amino_acid_start": 24 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/173af448-383b-440a-b182-4f2dec5c4544_0|orf_314-847", "protein_id": "173af448-383b-440a-b182-4f2dec5c4544_0|orf_314-847", "rna_call_id": "142301", "variant_amino_acid_start": 24 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_242-775", "protein_id": "886bbc74-2e9c-4b68-964e-93daab0a754b_0|orf_242-775", "rna_call_id": "144198", "variant_amino_acid_start": 24 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 2 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 7 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 7 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 4 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 63 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 56 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 3 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 3 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 46 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 46 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 2 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 2 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 5 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 3 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 38 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 38 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 2 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 11, "alt_reads": 12, "total_reads": 23, "vaf": 0.5217, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 41, "alt_reads": 0, "total_reads": 42, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 16, "alt_reads": 46, "total_reads": 62, "vaf": 0.7419, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 1, "alt_reads": 3, "total_reads": 4, "vaf": 0.75, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 16, "alt_reads": 41, "total_reads": 57, "vaf": 0.7193, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 0, "alt_reads": 8, "total_reads": 8, "vaf": 1.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 0, "alt_reads": 22, "total_reads": 22, "vaf": 1.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 0, "alt_reads": 8, "total_reads": 8, "vaf": 1.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 24, "alt_reads": 158, "total_reads": 182, "vaf": 0.8681, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 136, "alt_reads": 237, "total_reads": 373, "vaf": 0.6354, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 12, "alt_reads": 24, "total_reads": 37, "vaf": 0.6486, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 29, "alt_reads": 10, "total_reads": 39, "vaf": 0.2564, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 69, "alt_reads": 305, "total_reads": 374, "vaf": 0.8155, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 105, "alt_reads": 378, "total_reads": 484, "vaf": 0.781, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 66, "alt_reads": 15, "total_reads": 82, "vaf": 0.1829, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 378, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 305, "category": "multiple", "sid_alt_reads": 305, "exacto_raw_rnas": 56 }, "T2-ONT": { "max_alt_reads": 378, "category": "multiple", "sid_alt_reads": 378, "exacto_raw_rnas": 38 }, "T3-ONT": { "max_alt_reads": 15, "category": "multiple", "sid_alt_reads": 15, "exacto_raw_rnas": 2 }, "T1-PacBio": { "max_alt_reads": 46, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 46 }, "T2-ILMN": { "max_alt_reads": 22, "category": "multiple", "sid_alt_reads": 22, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "MYO15B-chr17-75589953", "gene": "MYO15B", "chrom": "chr17", "pos": 75589953, "ref": "GC", "alt": "G", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "fs", "consequence": "frameshift_variant", "vaccines": [ "JLF V1", "JLF V2" ], "published_vaccine_peptides": [ { "peptide_id": "MYO15B-chr17-75589953.peptide-1", "experiments": [ { "additional_testing": "", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038.MT.67.MYO15B", "pool": "L1", "result": "Negative", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2023-09-22", "experiment": "UNC Immune Monitoring (Spring, 2024)", "outcomes": "Observed reactivity to MAP2 / TECPR1; no sequencing performed", "pbmcs_label": "(2023/09/22, 2023/11/28)", "peptide_id": "JLF-100-038R.MT.67.MYO15B.1", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs stimulated with 9 pooled CSBio long peptides. ELISPOT performed with individual peptide stimulation." }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.67.MYO15B.1", "pool": "NA", "result": "Positive (Weak)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2", "JLF V1" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "AGRRAQAPTRVLGLAPP", "scoring_region": { "sequence": "AGRRAQAPTRVLGLAPP", "start": 0, "end": 17, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5dc8c7a0-72f1-4653-a3b5-687de5a668a9_0|orf_125-625", "protein_id": "5dc8c7a0-72f1-4653-a3b5-687de5a668a9_0|orf_125-625", "rna_call_id": "43969", "amino_acid_starts": [ 127 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": null, "reconstructed_candidates": [ { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5dc8c7a0-72f1-4653-a3b5-687de5a668a9_0|orf_125-625", "protein_id": "5dc8c7a0-72f1-4653-a3b5-687de5a668a9_0|orf_125-625", "rna_call_id": "43969", "variant_amino_acid_start": 124 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 5, "alt_reads": 0, "total_reads": 7, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 2, "alt_reads": 0, "total_reads": 2, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 19, "alt_reads": 0, "total_reads": 19, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 4, "alt_reads": 0, "total_reads": 5, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 19, "alt_reads": 0, "total_reads": 19, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 39, "alt_reads": 0, "total_reads": 39, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 83, "alt_reads": 0, "total_reads": 83, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 42, "alt_reads": 0, "total_reads": 42, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 9, "alt_reads": 0, "total_reads": 10, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 4, "alt_reads": 0, "total_reads": 4, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 6, "alt_reads": 1, "total_reads": 7, "vaf": 0.1429, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 5, "alt_reads": 0, "total_reads": 5, "vaf": 0.0, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 2, "alt_reads": 0, "total_reads": 2, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 1, "category": "single", "by_sample": { "T1-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T2-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "EPG5-chr18-45925851", "gene": "EPG5", "chrom": "chr18", "pos": 45925851, "ref": "C", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ala869Thr", "consequence": "missense_variant", "vaccines": [ "CeGaT", "JLF V1", "JLF V2" ], "published_vaccine_peptides": [ { "peptide_id": "EPG5-chr18-45925851.peptide-1", "experiments": [ { "additional_testing": "", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038R.MT.76.EPG5", "pool": "L1", "result": "Negative", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2023-09-22", "experiment": "UNC Immune Monitoring (Spring, 2024)", "outcomes": "Observed reactivity to MAP2 / TECPR1; no sequencing performed", "pbmcs_label": "(2023/09/22, 2023/11/28)", "peptide_id": "JLF-100-038R.MT.76.EPG5.2", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs stimulated with 9 pooled CSBio long peptides. ELISPOT performed with individual peptide stimulation." }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.76.EPG5.2", "pool": "NA", "result": "Positive (Weak)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "KELPLYLWQPSTSEIAVIRDWKK", "scoring_region": { "sequence": "KELPLYLWQPSTSEIAVIRDW", "start": 0, "end": 21, "terminal_tags": [ { "terminus": "C", "start": 21, "end": 23, "sequence": "KK" } ] }, "matches": [] }, { "peptide_id": "EPG5-chr18-45925851.peptide-2", "experiments": [], "in_vaccines": [ "JLF V1" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "KELPLYLWQPSTSEIAVIRD", "scoring_region": { "sequence": "KELPLYLWQPSTSEIAVIRD", "start": 0, "end": 20, "terminal_tags": [] }, "matches": [] }, { "peptide_id": "EPG5-chr18-45925851.peptide-3", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "KKSVIRTLSTIDDVEDRENEKGR", "scoring_region": { "sequence": "KKSVIRTLSTIDDVEDRENEKGR", "start": 0, "end": 23, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "no_call", "residue_confirmed": null, "reconstructed_candidates": [], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 112, "alt_reads": 17, "total_reads": 129, "vaf": 0.1318, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 345, "alt_reads": 0, "total_reads": 345, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 208, "alt_reads": 0, "total_reads": 208, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 35, "alt_reads": 5, "total_reads": 40, "vaf": 0.125, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 205, "alt_reads": 0, "total_reads": 205, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 100, "alt_reads": 0, "total_reads": 100, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 210, "alt_reads": 0, "total_reads": 210, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 103, "alt_reads": 0, "total_reads": 103, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 10, "alt_reads": 0, "total_reads": 10, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 10, "alt_reads": 0, "total_reads": 10, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 6, "alt_reads": 0, "total_reads": 6, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 5, "alt_reads": 0, "total_reads": 5, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 11, "alt_reads": 0, "total_reads": 11, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 10, "alt_reads": 0, "total_reads": 10, "vaf": 0.0, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 10, "alt_reads": 0, "total_reads": 10, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 0, "category": "zero", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "SLC25A12-chr2-171813470", "gene": "SLC25A12", "chrom": "chr2", "pos": 171813470, "ref": "A", "alt": "G", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ile347Thr", "consequence": "missense_variant", "vaccines": [ "CeGaT", "JLF V1", "JLF V2", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "SLC25A12-chr2-171813470.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 14, "sequence": "AYRFTLGSVAGAVGATAVYPTDLVKTRMQNQ", "scoring_region": { "sequence": "AYRFTLGSVAGAVGATAVYPTDLVKTRMQNQ", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "protein_id": "0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "rna_call_id": "4910", "amino_acid_starts": [ 327 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "rna_call_id": "4802", "amino_acid_starts": [ 327 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "protein_id": "3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "rna_call_id": "4813", "amino_acid_starts": [ 327 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "protein_id": "3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "rna_call_id": "4858", "amino_acid_starts": [ 327 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "rna_call_id": "4835", "amino_acid_starts": [ 327 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "rna_call_id": "4662", "amino_acid_starts": [ 152 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "rna_call_id": "4842", "amino_acid_starts": [ 327 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "rna_call_id": "4825", "amino_acid_starts": [ 99 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "protein_id": "ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "rna_call_id": "4637", "amino_acid_starts": [ 327 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "protein_id": "ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "rna_call_id": "4673", "amino_acid_starts": [ 152 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "rna_call_id": "4872", "amino_acid_starts": [ 327 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "rna_call_id": "18453", "amino_acid_starts": [ 305 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "rna_call_id": "18473", "amino_acid_starts": [ 218 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "rna_call_id": "18070", "amino_acid_starts": [ 153 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "rna_call_id": "18664", "amino_acid_starts": [ 327 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "rna_call_id": "18634", "amino_acid_starts": [ 99 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "rna_call_id": "18819", "amino_acid_starts": [ 99 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4537485|orf_32-2068", "protein_id": "molecule/4537485|orf_32-2068", "rna_call_id": "673", "amino_acid_starts": [ 327 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7246117|orf_32-2068", "protein_id": "molecule/7246117|orf_32-2068", "rna_call_id": "658", "amino_acid_starts": [ 327 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4537485|orf_32-1474", "protein_id": "molecule/4537485|orf_32-1474", "rna_call_id": "1336", "amino_acid_starts": [ 327 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "protein_id": "36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "rna_call_id": "25682", "amino_acid_starts": [ 236 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "protein_id": "c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "rna_call_id": "26200", "amino_acid_starts": [ 238 ] } ] }, { "peptide_id": "SLC25A12-chr2-171813470.peptide-2", "experiments": [ { "additional_testing": "", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15)", "peptide_id": "P6-2.SLC25A12", "pool": "S2", "result": "Negative", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "ATAVYPTDL", "scoring_region": { "sequence": "ATAVYPTDL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/00241404-313d-49df-b5c1-01d6d87e229a_0|orf_47-1147", "protein_id": "00241404-313d-49df-b5c1-01d6d87e229a_0|orf_47-1147", "rna_call_id": "4646", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "protein_id": "0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "rna_call_id": "4910", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "rna_call_id": "4802", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "protein_id": "3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "rna_call_id": "4813", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "protein_id": "3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "rna_call_id": "4858", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "rna_call_id": "4835", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "rna_call_id": "4662", "amino_acid_starts": [ 166 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "rna_call_id": "4842", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "rna_call_id": "4825", "amino_acid_starts": [ 113 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "protein_id": "ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "rna_call_id": "4637", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "protein_id": "ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "rna_call_id": "4673", "amino_acid_starts": [ 166 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "rna_call_id": "4872", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "rna_call_id": "18453", "amino_acid_starts": [ 319 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "rna_call_id": "18473", "amino_acid_starts": [ 232 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "rna_call_id": "18070", "amino_acid_starts": [ 167 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "rna_call_id": "18664", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "rna_call_id": "18634", "amino_acid_starts": [ 113 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "rna_call_id": "18819", "amino_acid_starts": [ 113 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4537485|orf_32-2068", "protein_id": "molecule/4537485|orf_32-2068", "rna_call_id": "673", "amino_acid_starts": [ 341 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7246117|orf_32-2068", "protein_id": "molecule/7246117|orf_32-2068", "rna_call_id": "658", "amino_acid_starts": [ 341 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4537485|orf_32-1474", "protein_id": "molecule/4537485|orf_32-1474", "rna_call_id": "1336", "amino_acid_starts": [ 341 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1c547dd9-c7d0-4b68-b56d-cd6d0618f421_0|orf_759-2060", "protein_id": "1c547dd9-c7d0-4b68-b56d-cd6d0618f421_0|orf_759-2060", "rna_call_id": "26575", "amino_acid_starts": [ 96 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "protein_id": "36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "rna_call_id": "25682", "amino_acid_starts": [ 250 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "protein_id": "c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "rna_call_id": "26200", "amino_acid_starts": [ 252 ] } ] }, { "peptide_id": "SLC25A12-chr2-171813470.peptide-3", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038.MT.8.SLC25A12", "pool": "L2", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2023-09-22", "experiment": "UNC Immune Monitoring (Spring, 2024)", "outcomes": "Observed reactivity to MAP2 / TECPR1; no sequencing performed", "pbmcs_label": "(2023/09/22, 2023/11/28)", "peptide_id": "JLF-100-038R.MT.8.SLC25A12.3", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs stimulated with 9 pooled CSBio long peptides. ELISPOT performed with individual peptide stimulation." }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038R.MT.8.SLC25A12.3", "pool": "Pool 1", "result": "Positive (Weak)", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038R.MT.8.SLC25A12.3", "pool": "", "result": "Negative", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.8.SLC25A12.3", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2", "JLF V1" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 8, "sequence": "GSVAGAVGATAVYPTDLVKTRMQNQR", "scoring_region": { "sequence": "GSVAGAVGATAVYPTDLVKTRMQNQR", "start": 0, "end": 26, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "protein_id": "0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "rna_call_id": "4910", "amino_acid_starts": [ 333 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "rna_call_id": "4802", "amino_acid_starts": [ 333 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "protein_id": "3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "rna_call_id": "4813", "amino_acid_starts": [ 333 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "protein_id": "3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "rna_call_id": "4858", "amino_acid_starts": [ 333 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "rna_call_id": "4835", "amino_acid_starts": [ 333 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "rna_call_id": "4662", "amino_acid_starts": [ 158 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "rna_call_id": "4842", "amino_acid_starts": [ 333 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "rna_call_id": "4825", "amino_acid_starts": [ 105 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "protein_id": "ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "rna_call_id": "4637", "amino_acid_starts": [ 333 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "protein_id": "ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "rna_call_id": "4673", "amino_acid_starts": [ 158 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "rna_call_id": "4872", "amino_acid_starts": [ 333 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "rna_call_id": "18453", "amino_acid_starts": [ 311 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "rna_call_id": "18473", "amino_acid_starts": [ 224 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "rna_call_id": "18070", "amino_acid_starts": [ 159 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "rna_call_id": "18664", "amino_acid_starts": [ 333 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "rna_call_id": "18634", "amino_acid_starts": [ 105 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "rna_call_id": "18819", "amino_acid_starts": [ 105 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4537485|orf_32-2068", "protein_id": "molecule/4537485|orf_32-2068", "rna_call_id": "673", "amino_acid_starts": [ 333 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7246117|orf_32-2068", "protein_id": "molecule/7246117|orf_32-2068", "rna_call_id": "658", "amino_acid_starts": [ 333 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4537485|orf_32-1474", "protein_id": "molecule/4537485|orf_32-1474", "rna_call_id": "1336", "amino_acid_starts": [ 333 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "protein_id": "36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "rna_call_id": "25682", "amino_acid_starts": [ 242 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "protein_id": "c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "rna_call_id": "26200", "amino_acid_starts": [ 244 ] } ] }, { "peptide_id": "SLC25A12-chr2-171813470.peptide-4", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 2, "sequence": "VGATAVYPTDLVKTRMQ", "scoring_region": { "sequence": "VGATAVYPTDLVKTRMQ", "start": 0, "end": 17, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "protein_id": "0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "rna_call_id": "4910", "amino_acid_starts": [ 339 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "rna_call_id": "4802", "amino_acid_starts": [ 339 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "protein_id": "3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "rna_call_id": "4813", "amino_acid_starts": [ 339 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "protein_id": "3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "rna_call_id": "4858", "amino_acid_starts": [ 339 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "rna_call_id": "4835", "amino_acid_starts": [ 339 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "rna_call_id": "4662", "amino_acid_starts": [ 164 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "rna_call_id": "4842", "amino_acid_starts": [ 339 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "rna_call_id": "4825", "amino_acid_starts": [ 111 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "protein_id": "ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "rna_call_id": "4637", "amino_acid_starts": [ 339 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "protein_id": "ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "rna_call_id": "4673", "amino_acid_starts": [ 164 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "rna_call_id": "4872", "amino_acid_starts": [ 339 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "rna_call_id": "18453", "amino_acid_starts": [ 317 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "rna_call_id": "18473", "amino_acid_starts": [ 230 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "rna_call_id": "18070", "amino_acid_starts": [ 165 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "rna_call_id": "18664", "amino_acid_starts": [ 339 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "rna_call_id": "18634", "amino_acid_starts": [ 111 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "rna_call_id": "18819", "amino_acid_starts": [ 111 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4537485|orf_32-2068", "protein_id": "molecule/4537485|orf_32-2068", "rna_call_id": "673", "amino_acid_starts": [ 339 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7246117|orf_32-2068", "protein_id": "molecule/7246117|orf_32-2068", "rna_call_id": "658", "amino_acid_starts": [ 339 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4537485|orf_32-1474", "protein_id": "molecule/4537485|orf_32-1474", "rna_call_id": "1336", "amino_acid_starts": [ 339 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "protein_id": "36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "rna_call_id": "25682", "amino_acid_starts": [ 248 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "protein_id": "c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "rna_call_id": "26200", "amino_acid_starts": [ 250 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/00241404-313d-49df-b5c1-01d6d87e229a_0|orf_47-1147", "protein_id": "00241404-313d-49df-b5c1-01d6d87e229a_0|orf_47-1147", "rna_call_id": "4646", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "protein_id": "0ef87b98-c784-46bc-a03f-b4f60cfc8c5a_0|orf_33-2069", "rna_call_id": "4910", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_70-2142", "rna_call_id": "4802", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "protein_id": "3751d2fd-586a-465b-ae37-bac3410caf86_0|orf_33-2069", "rna_call_id": "4813", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "protein_id": "3aad941b-862e-45d3-af95-67dfdd8484e5_0|orf_33-2069", "rna_call_id": "4858", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_44-2080", "rna_call_id": "4835", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-1766", "rna_call_id": "4662", "variant_amino_acid_start": 172 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-2055", "rna_call_id": "4842", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-1439", "rna_call_id": "4825", "variant_amino_acid_start": 119 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "protein_id": "ac91c8ee-865e-4b90-8fe7-f3f9124ce90d_0|orf_23-2155", "rna_call_id": "4637", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "protein_id": "ddfdcb03-2630-4d13-b93b-076eca0198b9_0|orf_228-1739", "rna_call_id": "4673", "variant_amino_acid_start": 172 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_22-2058", "rna_call_id": "4872", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "protein_id": "1c65353d-d721-406e-82d6-01737266afab_0|orf_137-2053", "rna_call_id": "18453", "variant_amino_acid_start": 325 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "protein_id": "548d209e-fb45-4b84-a9ba-fa73dc94ad31_0|orf_372-1196", "rna_call_id": "18473", "variant_amino_acid_start": 238 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "protein_id": "7037e98a-7655-4014-8b7d-4ee4c0fe846e_0|orf_255-908", "rna_call_id": "18070", "variant_amino_acid_start": 173 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "protein_id": "8abfc453-1d9a-4436-a5f5-d314f27339ab_1|orf_19-1920", "rna_call_id": "18664", "variant_amino_acid_start": 347 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "protein_id": "99a36bd3-df3f-4ebe-8997-529518afe2c1_0|orf_87-623", "rna_call_id": "18634", "variant_amino_acid_start": 119 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "protein_id": "e0ad7a18-ee20-41fc-9edf-d9b3cd98d38a_0|orf_707-1642", "rna_call_id": "18819", "variant_amino_acid_start": 119 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4537485|orf_32-2068", "protein_id": "molecule/4537485|orf_32-2068", "rna_call_id": "673", "variant_amino_acid_start": 347 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7246117|orf_32-2068", "protein_id": "molecule/7246117|orf_32-2068", "rna_call_id": "658", "variant_amino_acid_start": 347 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4537485|orf_32-1474", "protein_id": "molecule/4537485|orf_32-1474", "rna_call_id": "1336", "variant_amino_acid_start": 347 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/024bdfba-dcb8-4ee2-b10d-87a5fd91177a_0|orf_54-1175", "protein_id": "024bdfba-dcb8-4ee2-b10d-87a5fd91177a_0|orf_54-1175", "rna_call_id": "25673", "variant_amino_acid_start": 347 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1c547dd9-c7d0-4b68-b56d-cd6d0618f421_0|orf_759-2060", "protein_id": "1c547dd9-c7d0-4b68-b56d-cd6d0618f421_0|orf_759-2060", "rna_call_id": "26575", "variant_amino_acid_start": 102 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "protein_id": "36016d09-7cbd-4114-98f8-a4df043f9bcb_0|orf_629-1531", "rna_call_id": "25682", "variant_amino_acid_start": 256 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "protein_id": "c8f13737-df48-488f-b25b-2e85fac6a25e_0|orf_126-1682", "rna_call_id": "26200", "variant_amino_acid_start": 258 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 28 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 30 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 4 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 4 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 6 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 14 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 66, "alt_reads": 46, "total_reads": 112, "vaf": 0.4107, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 152, "alt_reads": 0, "total_reads": 152, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 78, "alt_reads": 76, "total_reads": 154, "vaf": 0.4935, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 13, "alt_reads": 5, "total_reads": 18, "vaf": 0.2778, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 79, "alt_reads": 70, "total_reads": 149, "vaf": 0.4698, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 26, "alt_reads": 3, "total_reads": 29, "vaf": 0.1034, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 38, "alt_reads": 8, "total_reads": 46, "vaf": 0.1739, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 25, "alt_reads": 4, "total_reads": 29, "vaf": 0.1379, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 40, "alt_reads": 20, "total_reads": 60, "vaf": 0.3333, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 22, "alt_reads": 11, "total_reads": 33, "vaf": 0.3333, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 2, "alt_reads": 3, "total_reads": 5, "vaf": 0.6, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 31, "alt_reads": 1, "total_reads": 32, "vaf": 0.0312, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 79, "alt_reads": 30, "total_reads": 109, "vaf": 0.2752, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 97, "alt_reads": 14, "total_reads": 111, "vaf": 0.1261, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 317, "alt_reads": 0, "total_reads": 317, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 30, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 30, "category": "multiple", "sid_alt_reads": 30, "exacto_raw_rnas": 30 }, "T2-ONT": { "max_alt_reads": 14, "category": "multiple", "sid_alt_reads": 14, "exacto_raw_rnas": 14 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 4, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 4 }, "T2-ILMN": { "max_alt_reads": 8, "category": "multiple", "sid_alt_reads": 8, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "MAP2-chr2-209694768", "gene": "MAP2", "chrom": "chr2", "pos": 209694768, "ref": "CCTGGGCTACTGTGTGTTCAATAAGTACACAGT", "alt": "CAGGG", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Leu867fs", "consequence": "frameshift_variant", "vaccines": [ "JLF V1", "JLF V2", "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "MAP2-chr2-209694768.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 22, "sequence": "DSQLEDRAHCHHLFKTVRIYQGRVVPFTKALMIKFEEIWPQTFH", "scoring_region": { "sequence": "DSQLEDRAHCHHLFKTVRIYQGRVVPFTKALMIKFEEIWPQTFH", "start": 0, "end": 44, "terminal_tags": [] }, "matches": [] }, { "peptide_id": "MAP2-chr2-209694768.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "RVVPFTKAL", "scoring_region": { "sequence": "RVVPFTKAL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [] }, { "peptide_id": "MAP2-chr2-209694768.peptide-3", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 8, "sequence": "KTVRIYQGRVVPFTKALMIKFEE", "scoring_region": { "sequence": "KTVRIYQGRVVPFTKALMIKFEE", "start": 0, "end": 23, "terminal_tags": [] }, "matches": [] }, { "peptide_id": "MAP2-chr2-209694768.peptide-4", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038.MT.14.MAP2", "pool": "L2", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2023-09-22", "experiment": "UNC Immune Monitoring (Spring, 2024)", "outcomes": "Observed reactivity to MAP2 / TECPR1; no sequencing performed", "pbmcs_label": "(2023/09/22, 2023/11/28)", "peptide_id": "JLF-100-038.MT.14.MAP2.2", "pool": "NA", "result": "Positive (Strong)", "summary": "Whole PBMCs stimulated with 9 pooled CSBio long peptides. ELISPOT performed with individual peptide stimulation." }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038.MT.14.MAP2.2", "pool": "Pool 1", "result": "Positive (Weak)", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038.MT.14.MAP2.2", "pool": "", "result": "Positive (Weak)", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038.MT.14.MAP2.2", "pool": "NA", "result": "Positive (Strong**)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2", "JLF V1" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 8, "sequence": "KTVRIYQGRVVPFTKALMIKFEEI", "scoring_region": { "sequence": "KTVRIYQGRVVPFTKALMIKFEEI", "start": 0, "end": 24, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "no_call", "residue_confirmed": null, "reconstructed_candidates": [], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 8, "alt_reads": 0, "total_reads": 32, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 122, "alt_reads": 0, "total_reads": 129, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 7, "alt_reads": 0, "total_reads": 22, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 0, "alt_reads": 0, "total_reads": 2, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna;allele-MAP2-chr2-209694768", "ref_reads": 7, "alt_reads": 0, "total_reads": 16, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 2, "alt_reads": 0, "total_reads": 3, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 3, "alt_reads": 0, "total_reads": 4, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 0, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 5, "alt_reads": 0, "total_reads": 5, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 2, "alt_reads": 0, "total_reads": 2, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 0, "alt_reads": 1, "total_reads": 1, "vaf": 1.0, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": "allele-MAP2-chr2-209694768", "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 1, "category": "single", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "BTD-chr3-15645183", "gene": "BTD", "chrom": "chr3", "pos": 15645183, "ref": "T", "alt": "G", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Phe445Val", "consequence": "missense_variant", "vaccines": [ "JLF V1", "JLF V2", "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "BTD-chr3-15645183.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 16, "sequence": "YLLYERPTLSKELYALGVVDGLHTVHGTYYI", "scoring_region": { "sequence": "YLLYERPTLSKELYALGVVDGLHTVHGTYYI", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_317-1888", "protein_id": "1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_317-1888", "rna_call_id": "5660", "amino_acid_starts": [ 405 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/221525a9-fbf5-4fa9-80da-2585ad81f5ef_0|orf_16-1614", "protein_id": "221525a9-fbf5-4fa9-80da-2585ad81f5ef_0|orf_16-1614", "rna_call_id": "5564", "amino_acid_starts": [ 414 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1737", "protein_id": "571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1737", "rna_call_id": "5537", "amino_acid_starts": [ 425 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_107-1738", "protein_id": "60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_107-1738", "rna_call_id": "5423", "amino_acid_starts": [ 425 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/61ca82b1-36f0-4770-bfa1-16339dfb782f_0|orf_105-1736", "protein_id": "61ca82b1-36f0-4770-bfa1-16339dfb782f_0|orf_105-1736", "rna_call_id": "5541", "amino_acid_starts": [ 425 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1738", "protein_id": "70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1738", "rna_call_id": "5414", "amino_acid_starts": [ 425 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "protein_id": "86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "rna_call_id": "5625", "amino_acid_starts": [ 425 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/93ae6744-c2a2-4b64-805a-f00d84b97ba1_0|orf_802-1617", "protein_id": "93ae6744-c2a2-4b64-805a-f00d84b97ba1_0|orf_802-1617", "rna_call_id": "5468", "amino_acid_starts": [ 153 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a4ed9da-771a-4a70-a5cb-a9c267a9264f_0|orf_26-1624", "protein_id": "9a4ed9da-771a-4a70-a5cb-a9c267a9264f_0|orf_26-1624", "rna_call_id": "5409", "amino_acid_starts": [ 414 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7b32005-eda0-4342-88a8-3cdc1e515c7d_0|orf_17-1615", "protein_id": "a7b32005-eda0-4342-88a8-3cdc1e515c7d_0|orf_17-1615", "rna_call_id": "5476", "amino_acid_starts": [ 414 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_22-732", "protein_id": "ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_22-732", "rna_call_id": "5706", "amino_acid_starts": [ 118 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1614", "protein_id": "be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1614", "rna_call_id": "5442", "amino_acid_starts": [ 414 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_250-1065", "protein_id": "e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_250-1065", "rna_call_id": "5687", "amino_acid_starts": [ 153 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f21da920-255e-4911-bbc2-79980989d93c_0|orf_16-831", "protein_id": "f21da920-255e-4911-bbc2-79980989d93c_0|orf_16-831", "rna_call_id": "5695", "amino_acid_starts": [ 153 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_511-1890", "protein_id": "1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_511-1890", "rna_call_id": "21995", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1671", "protein_id": "571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1671", "rna_call_id": "21448", "amino_acid_starts": [ 425 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1606", "protein_id": "70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1606", "rna_call_id": "21130", "amino_acid_starts": [ 425 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "protein_id": "86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "rna_call_id": "21715", "amino_acid_starts": [ 425 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1485", "protein_id": "be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1485", "rna_call_id": "20995", "amino_acid_starts": [ 414 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f21da920-255e-4911-bbc2-79980989d93c_0|orf_319-831", "protein_id": "f21da920-255e-4911-bbc2-79980989d93c_0|orf_319-831", "rna_call_id": "22141", "amino_acid_starts": [ 52 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3217266|orf_74-514", "protein_id": "molecule/3217266|orf_74-514", "rna_call_id": "1457", "amino_acid_starts": [ 28 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9988818|orf_249-1064", "protein_id": "molecule/9988818|orf_249-1064", "rna_call_id": "1447", "amino_acid_starts": [ 153 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1615", "protein_id": "072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1615", "rna_call_id": "8811", "amino_acid_starts": [ 414 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1b81241b-bf7f-409f-8a1b-d65a7bab6c11_0|orf_17-1615", "protein_id": "1b81241b-bf7f-409f-8a1b-d65a7bab6c11_0|orf_17-1615", "rna_call_id": "8913", "amino_acid_starts": [ 414 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4cd604e9-b6dc-45d0-af6e-1731bdcc1242_0|orf_292-1896", "protein_id": "4cd604e9-b6dc-45d0-af6e-1731bdcc1242_0|orf_292-1896", "rna_call_id": "9059", "amino_acid_starts": [ 417 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "protein_id": "5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "rna_call_id": "9222", "amino_acid_starts": [ 28 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_19-1617", "protein_id": "5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_19-1617", "rna_call_id": "8850", "amino_acid_starts": [ 414 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "protein_id": "68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "rna_call_id": "9178", "amino_acid_starts": [ 118 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_5-1642", "protein_id": "85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_5-1642", "rna_call_id": "8752", "amino_acid_starts": [ 427 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_108-1739", "protein_id": "9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_108-1739", "rna_call_id": "8788", "amino_acid_starts": [ 425 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_17-1615", "protein_id": "b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_17-1615", "rna_call_id": "8846", "amino_acid_starts": [ 414 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_100-1548", "protein_id": "bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_100-1548", "rna_call_id": "8960", "amino_acid_starts": [ 425 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_91-1722", "protein_id": "bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_91-1722", "rna_call_id": "8995", "amino_acid_starts": [ 425 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "protein_id": "cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "rna_call_id": "9141", "amino_acid_starts": [ 345 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_11-1648", "protein_id": "d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_11-1648", "rna_call_id": "8749", "amino_acid_starts": [ 427 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_211-651", "protein_id": "d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_211-651", "rna_call_id": "9190", "amino_acid_starts": [ 28 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_2-1378", "protein_id": "ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_2-1378", "rna_call_id": "9144", "amino_acid_starts": [ 340 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ea626a9f-1d9b-4d80-816c-62de8c451b16_0|orf_106-1737", "protein_id": "ea626a9f-1d9b-4d80-816c-62de8c451b16_0|orf_106-1737", "rna_call_id": "8888", "amino_acid_starts": [ 425 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1612", "protein_id": "072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1612", "rna_call_id": "28743", "amino_acid_starts": [ 414 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "protein_id": "5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "rna_call_id": "30393", "amino_acid_starts": [ 28 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "protein_id": "68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "rna_call_id": "30184", "amino_acid_starts": [ 118 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_266-1642", "protein_id": "85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_266-1642", "rna_call_id": "28518", "amino_acid_starts": [ 340 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_587-1738", "protein_id": "9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_587-1738", "rna_call_id": "28933", "amino_acid_starts": [ 265 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_107-1549", "protein_id": "bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_107-1549", "rna_call_id": "29303", "amino_acid_starts": [ 423 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_487-1725", "protein_id": "bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_487-1725", "rna_call_id": "29429", "amino_acid_starts": [ 294 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_54-1520", "protein_id": "d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_54-1520", "rna_call_id": "28524", "amino_acid_starts": [ 414 ] } ] }, { "peptide_id": "BTD-chr3-15645183.peptide-2", "experiments": [ { "additional_testing": "", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15)", "peptide_id": "P4-2.BTD", "pool": "S1", "result": "Negative", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "GVVDGLHTV", "scoring_region": { "sequence": "GVVDGLHTV", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_317-1888", "protein_id": "1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_317-1888", "rna_call_id": "5660", "amino_acid_starts": [ 421 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/221525a9-fbf5-4fa9-80da-2585ad81f5ef_0|orf_16-1614", "protein_id": "221525a9-fbf5-4fa9-80da-2585ad81f5ef_0|orf_16-1614", "rna_call_id": "5564", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1737", "protein_id": "571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1737", "rna_call_id": "5537", "amino_acid_starts": [ 441 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_107-1738", "protein_id": "60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_107-1738", "rna_call_id": "5423", "amino_acid_starts": [ 441 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/61ca82b1-36f0-4770-bfa1-16339dfb782f_0|orf_105-1736", "protein_id": "61ca82b1-36f0-4770-bfa1-16339dfb782f_0|orf_105-1736", "rna_call_id": "5541", "amino_acid_starts": [ 441 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1738", "protein_id": "70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1738", "rna_call_id": "5414", "amino_acid_starts": [ 441 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "protein_id": "86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "rna_call_id": "5625", "amino_acid_starts": [ 441 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/93ae6744-c2a2-4b64-805a-f00d84b97ba1_0|orf_802-1617", "protein_id": "93ae6744-c2a2-4b64-805a-f00d84b97ba1_0|orf_802-1617", "rna_call_id": "5468", "amino_acid_starts": [ 169 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a4ed9da-771a-4a70-a5cb-a9c267a9264f_0|orf_26-1624", "protein_id": "9a4ed9da-771a-4a70-a5cb-a9c267a9264f_0|orf_26-1624", "rna_call_id": "5409", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7b32005-eda0-4342-88a8-3cdc1e515c7d_0|orf_17-1615", "protein_id": "a7b32005-eda0-4342-88a8-3cdc1e515c7d_0|orf_17-1615", "rna_call_id": "5476", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_22-732", "protein_id": "ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_22-732", "rna_call_id": "5706", "amino_acid_starts": [ 134 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1614", "protein_id": "be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1614", "rna_call_id": "5442", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_250-1065", "protein_id": "e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_250-1065", "rna_call_id": "5687", "amino_acid_starts": [ 169 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f21da920-255e-4911-bbc2-79980989d93c_0|orf_16-831", "protein_id": "f21da920-255e-4911-bbc2-79980989d93c_0|orf_16-831", "rna_call_id": "5695", "amino_acid_starts": [ 169 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_511-1890", "protein_id": "1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_511-1890", "rna_call_id": "21995", "amino_acid_starts": [ 357 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1671", "protein_id": "571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1671", "rna_call_id": "21448", "amino_acid_starts": [ 441 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1606", "protein_id": "70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1606", "rna_call_id": "21130", "amino_acid_starts": [ 441 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "protein_id": "86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "rna_call_id": "21715", "amino_acid_starts": [ 441 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1485", "protein_id": "be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1485", "rna_call_id": "20995", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f21da920-255e-4911-bbc2-79980989d93c_0|orf_319-831", "protein_id": "f21da920-255e-4911-bbc2-79980989d93c_0|orf_319-831", "rna_call_id": "22141", "amino_acid_starts": [ 68 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3217266|orf_74-514", "protein_id": "molecule/3217266|orf_74-514", "rna_call_id": "1457", "amino_acid_starts": [ 44 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9988818|orf_249-1064", "protein_id": "molecule/9988818|orf_249-1064", "rna_call_id": "1447", "amino_acid_starts": [ 169 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1615", "protein_id": "072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1615", "rna_call_id": "8811", "amino_acid_starts": [ 430 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1b81241b-bf7f-409f-8a1b-d65a7bab6c11_0|orf_17-1615", "protein_id": "1b81241b-bf7f-409f-8a1b-d65a7bab6c11_0|orf_17-1615", "rna_call_id": "8913", "amino_acid_starts": [ 430 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4cd604e9-b6dc-45d0-af6e-1731bdcc1242_0|orf_292-1896", "protein_id": "4cd604e9-b6dc-45d0-af6e-1731bdcc1242_0|orf_292-1896", "rna_call_id": "9059", "amino_acid_starts": [ 433 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "protein_id": "5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "rna_call_id": "9222", "amino_acid_starts": [ 44 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_19-1617", "protein_id": "5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_19-1617", "rna_call_id": "8850", "amino_acid_starts": [ 430 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "protein_id": "68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "rna_call_id": "9178", "amino_acid_starts": [ 134 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_5-1642", "protein_id": "85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_5-1642", "rna_call_id": "8752", "amino_acid_starts": [ 443 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_108-1739", "protein_id": "9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_108-1739", "rna_call_id": "8788", "amino_acid_starts": [ 441 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_17-1615", "protein_id": "b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_17-1615", "rna_call_id": "8846", "amino_acid_starts": [ 430 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_100-1548", "protein_id": "bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_100-1548", "rna_call_id": "8960", "amino_acid_starts": [ 441 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_91-1722", "protein_id": "bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_91-1722", "rna_call_id": "8995", "amino_acid_starts": [ 441 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "protein_id": "cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "rna_call_id": "9141", "amino_acid_starts": [ 361 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_11-1648", "protein_id": "d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_11-1648", "rna_call_id": "8749", "amino_acid_starts": [ 443 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_211-651", "protein_id": "d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_211-651", "rna_call_id": "9190", "amino_acid_starts": [ 44 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_2-1378", "protein_id": "ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_2-1378", "rna_call_id": "9144", "amino_acid_starts": [ 356 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ea626a9f-1d9b-4d80-816c-62de8c451b16_0|orf_106-1737", "protein_id": "ea626a9f-1d9b-4d80-816c-62de8c451b16_0|orf_106-1737", "rna_call_id": "8888", "amino_acid_starts": [ 441 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1612", "protein_id": "072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1612", "rna_call_id": "28743", "amino_acid_starts": [ 430 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "protein_id": "5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "rna_call_id": "30393", "amino_acid_starts": [ 44 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_805-1620", "protein_id": "5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_805-1620", "rna_call_id": "28907", "amino_acid_starts": [ 169 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "protein_id": "68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "rna_call_id": "30184", "amino_acid_starts": [ 134 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_266-1642", "protein_id": "85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_266-1642", "rna_call_id": "28518", "amino_acid_starts": [ 356 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_587-1738", "protein_id": "9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_587-1738", "rna_call_id": "28933", "amino_acid_starts": [ 281 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_107-1549", "protein_id": "bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_107-1549", "rna_call_id": "29303", "amino_acid_starts": [ 439 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_487-1725", "protein_id": "bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_487-1725", "rna_call_id": "29429", "amino_acid_starts": [ 310 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1608", "protein_id": "bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1608", "rna_call_id": "29294", "amino_acid_starts": [ 429 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_54-1520", "protein_id": "d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_54-1520", "rna_call_id": "28524", "amino_acid_starts": [ 430 ] } ] }, { "peptide_id": "BTD-chr3-15645183.peptide-3", "experiments": [ { "additional_testing": "", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038.MT.19.BTD", "pool": "L1", "result": "Negative", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2023-09-22", "experiment": "UNC Immune Monitoring (Spring, 2024)", "outcomes": "Observed reactivity to MAP2 / TECPR1; no sequencing performed", "pbmcs_label": "(2023/09/22, 2023/11/28)", "peptide_id": "JLF-100-038R.MT.19.BTD.1", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs stimulated with 9 pooled CSBio long peptides. ELISPOT performed with individual peptide stimulation." }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.19.BTD.1", "pool": "NA", "result": "Positive (Strong)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V3", "JLF V2", "JLF V1" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 11, "sequence": "RPTLSKELYALGVVDGLHTVHGT", "scoring_region": { "sequence": "RPTLSKELYALGVVDGLHTVHGT", "start": 0, "end": 23, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_317-1888", "protein_id": "1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_317-1888", "rna_call_id": "5660", "amino_acid_starts": [ 410 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/221525a9-fbf5-4fa9-80da-2585ad81f5ef_0|orf_16-1614", "protein_id": "221525a9-fbf5-4fa9-80da-2585ad81f5ef_0|orf_16-1614", "rna_call_id": "5564", "amino_acid_starts": [ 419 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1737", "protein_id": "571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1737", "rna_call_id": "5537", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_107-1738", "protein_id": "60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_107-1738", "rna_call_id": "5423", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/61ca82b1-36f0-4770-bfa1-16339dfb782f_0|orf_105-1736", "protein_id": "61ca82b1-36f0-4770-bfa1-16339dfb782f_0|orf_105-1736", "rna_call_id": "5541", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1738", "protein_id": "70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1738", "rna_call_id": "5414", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "protein_id": "86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "rna_call_id": "5625", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/93ae6744-c2a2-4b64-805a-f00d84b97ba1_0|orf_802-1617", "protein_id": "93ae6744-c2a2-4b64-805a-f00d84b97ba1_0|orf_802-1617", "rna_call_id": "5468", "amino_acid_starts": [ 158 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a4ed9da-771a-4a70-a5cb-a9c267a9264f_0|orf_26-1624", "protein_id": "9a4ed9da-771a-4a70-a5cb-a9c267a9264f_0|orf_26-1624", "rna_call_id": "5409", "amino_acid_starts": [ 419 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7b32005-eda0-4342-88a8-3cdc1e515c7d_0|orf_17-1615", "protein_id": "a7b32005-eda0-4342-88a8-3cdc1e515c7d_0|orf_17-1615", "rna_call_id": "5476", "amino_acid_starts": [ 419 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_22-732", "protein_id": "ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_22-732", "rna_call_id": "5706", "amino_acid_starts": [ 123 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1614", "protein_id": "be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1614", "rna_call_id": "5442", "amino_acid_starts": [ 419 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_250-1065", "protein_id": "e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_250-1065", "rna_call_id": "5687", "amino_acid_starts": [ 158 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f21da920-255e-4911-bbc2-79980989d93c_0|orf_16-831", "protein_id": "f21da920-255e-4911-bbc2-79980989d93c_0|orf_16-831", "rna_call_id": "5695", "amino_acid_starts": [ 158 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_511-1890", "protein_id": "1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_511-1890", "rna_call_id": "21995", "amino_acid_starts": [ 346 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1671", "protein_id": "571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1671", "rna_call_id": "21448", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1606", "protein_id": "70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1606", "rna_call_id": "21130", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "protein_id": "86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "rna_call_id": "21715", "amino_acid_starts": [ 430 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1485", "protein_id": "be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1485", "rna_call_id": "20995", "amino_acid_starts": [ 419 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f21da920-255e-4911-bbc2-79980989d93c_0|orf_319-831", "protein_id": "f21da920-255e-4911-bbc2-79980989d93c_0|orf_319-831", "rna_call_id": "22141", "amino_acid_starts": [ 57 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3217266|orf_74-514", "protein_id": "molecule/3217266|orf_74-514", "rna_call_id": "1457", "amino_acid_starts": [ 33 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9988818|orf_249-1064", "protein_id": "molecule/9988818|orf_249-1064", "rna_call_id": "1447", "amino_acid_starts": [ 158 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1615", "protein_id": "072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1615", "rna_call_id": "8811", "amino_acid_starts": [ 419 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1b81241b-bf7f-409f-8a1b-d65a7bab6c11_0|orf_17-1615", "protein_id": "1b81241b-bf7f-409f-8a1b-d65a7bab6c11_0|orf_17-1615", "rna_call_id": "8913", "amino_acid_starts": [ 419 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4cd604e9-b6dc-45d0-af6e-1731bdcc1242_0|orf_292-1896", "protein_id": "4cd604e9-b6dc-45d0-af6e-1731bdcc1242_0|orf_292-1896", "rna_call_id": "9059", "amino_acid_starts": [ 422 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "protein_id": "5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "rna_call_id": "9222", "amino_acid_starts": [ 33 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_19-1617", "protein_id": "5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_19-1617", "rna_call_id": "8850", "amino_acid_starts": [ 419 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "protein_id": "68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "rna_call_id": "9178", "amino_acid_starts": [ 123 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_5-1642", "protein_id": "85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_5-1642", "rna_call_id": "8752", "amino_acid_starts": [ 432 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_108-1739", "protein_id": "9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_108-1739", "rna_call_id": "8788", "amino_acid_starts": [ 430 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_17-1615", "protein_id": "b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_17-1615", "rna_call_id": "8846", "amino_acid_starts": [ 419 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_100-1548", "protein_id": "bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_100-1548", "rna_call_id": "8960", "amino_acid_starts": [ 430 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_91-1722", "protein_id": "bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_91-1722", "rna_call_id": "8995", "amino_acid_starts": [ 430 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "protein_id": "cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "rna_call_id": "9141", "amino_acid_starts": [ 350 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_11-1648", "protein_id": "d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_11-1648", "rna_call_id": "8749", "amino_acid_starts": [ 432 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_211-651", "protein_id": "d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_211-651", "rna_call_id": "9190", "amino_acid_starts": [ 33 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_2-1378", "protein_id": "ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_2-1378", "rna_call_id": "9144", "amino_acid_starts": [ 345 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ea626a9f-1d9b-4d80-816c-62de8c451b16_0|orf_106-1737", "protein_id": "ea626a9f-1d9b-4d80-816c-62de8c451b16_0|orf_106-1737", "rna_call_id": "8888", "amino_acid_starts": [ 430 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1612", "protein_id": "072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1612", "rna_call_id": "28743", "amino_acid_starts": [ 419 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "protein_id": "5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "rna_call_id": "30393", "amino_acid_starts": [ 33 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_805-1620", "protein_id": "5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_805-1620", "rna_call_id": "28907", "amino_acid_starts": [ 158 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "protein_id": "68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "rna_call_id": "30184", "amino_acid_starts": [ 123 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_266-1642", "protein_id": "85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_266-1642", "rna_call_id": "28518", "amino_acid_starts": [ 345 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_587-1738", "protein_id": "9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_587-1738", "rna_call_id": "28933", "amino_acid_starts": [ 270 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_107-1549", "protein_id": "bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_107-1549", "rna_call_id": "29303", "amino_acid_starts": [ 428 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_487-1725", "protein_id": "bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_487-1725", "rna_call_id": "29429", "amino_acid_starts": [ 299 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1608", "protein_id": "bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1608", "rna_call_id": "29294", "amino_acid_starts": [ 418 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_54-1520", "protein_id": "d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_54-1520", "rna_call_id": "28524", "amino_acid_starts": [ 419 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_317-1888", "protein_id": "1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_317-1888", "rna_call_id": "5660", "variant_amino_acid_start": 423 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/221525a9-fbf5-4fa9-80da-2585ad81f5ef_0|orf_16-1614", "protein_id": "221525a9-fbf5-4fa9-80da-2585ad81f5ef_0|orf_16-1614", "rna_call_id": "5564", "variant_amino_acid_start": 432 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1737", "protein_id": "571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1737", "rna_call_id": "5537", "variant_amino_acid_start": 443 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_107-1738", "protein_id": "60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_107-1738", "rna_call_id": "5423", "variant_amino_acid_start": 443 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/61ca82b1-36f0-4770-bfa1-16339dfb782f_0|orf_105-1736", "protein_id": "61ca82b1-36f0-4770-bfa1-16339dfb782f_0|orf_105-1736", "rna_call_id": "5541", "variant_amino_acid_start": 443 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1738", "protein_id": "70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1738", "rna_call_id": "5414", "variant_amino_acid_start": 443 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "protein_id": "86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "rna_call_id": "5625", "variant_amino_acid_start": 443 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/93ae6744-c2a2-4b64-805a-f00d84b97ba1_0|orf_802-1617", "protein_id": "93ae6744-c2a2-4b64-805a-f00d84b97ba1_0|orf_802-1617", "rna_call_id": "5468", "variant_amino_acid_start": 171 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a4ed9da-771a-4a70-a5cb-a9c267a9264f_0|orf_26-1624", "protein_id": "9a4ed9da-771a-4a70-a5cb-a9c267a9264f_0|orf_26-1624", "rna_call_id": "5409", "variant_amino_acid_start": 432 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7b32005-eda0-4342-88a8-3cdc1e515c7d_0|orf_17-1615", "protein_id": "a7b32005-eda0-4342-88a8-3cdc1e515c7d_0|orf_17-1615", "rna_call_id": "5476", "variant_amino_acid_start": 432 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_22-732", "protein_id": "ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_22-732", "rna_call_id": "5706", "variant_amino_acid_start": 136 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1614", "protein_id": "be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1614", "rna_call_id": "5442", "variant_amino_acid_start": 432 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d918dbd9-09c3-4652-aeb8-6985e0b1c25e_0|orf_15-1481", "protein_id": "d918dbd9-09c3-4652-aeb8-6985e0b1c25e_0|orf_15-1481", "rna_call_id": "5558", "variant_amino_acid_start": 431 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_250-1065", "protein_id": "e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_250-1065", "rna_call_id": "5687", "variant_amino_acid_start": 171 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f21da920-255e-4911-bbc2-79980989d93c_0|orf_16-831", "protein_id": "f21da920-255e-4911-bbc2-79980989d93c_0|orf_16-831", "rna_call_id": "5695", "variant_amino_acid_start": 171 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_511-1890", "protein_id": "1fe27ea1-e422-4d40-a511-990fcc58f174_0|orf_511-1890", "rna_call_id": "21995", "variant_amino_acid_start": 359 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1671", "protein_id": "571bb891-8175-449c-ad77-303094490dbc_0|orf_106-1671", "rna_call_id": "21448", "variant_amino_acid_start": 443 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_108-1439", "protein_id": "60b95b6d-490f-49d3-a17f-2e28b032739a_0|orf_108-1439", "rna_call_id": "21332", "variant_amino_acid_start": 443 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1606", "protein_id": "70db7e9c-a495-4bc7-ac9a-33252d75dd63_0|orf_107-1606", "rna_call_id": "21130", "variant_amino_acid_start": 443 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "protein_id": "86af5bbc-ada7-4e50-b330-3f6bc47eb91e_0|orf_91-1722", "rna_call_id": "21715", "variant_amino_acid_start": 443 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_407-595", "protein_id": "ab220e9d-f854-49b9-994e-b14facfedf41_0|orf_407-595", "rna_call_id": "22239", "variant_amino_acid_start": 5 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1485", "protein_id": "be60fd06-bf08-4407-ac46-6ca85ab6c167_0|orf_16-1485", "rna_call_id": "20995", "variant_amino_acid_start": 432 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_405-764", "protein_id": "e6c276c0-64e6-449c-b6f6-e1c14f8a6a49_0|orf_405-764", "rna_call_id": "22094", "variant_amino_acid_start": 119 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f21da920-255e-4911-bbc2-79980989d93c_0|orf_319-831", "protein_id": "f21da920-255e-4911-bbc2-79980989d93c_0|orf_319-831", "rna_call_id": "22141", "variant_amino_acid_start": 70 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3217266|orf_74-514", "protein_id": "molecule/3217266|orf_74-514", "rna_call_id": "1457", "variant_amino_acid_start": 46 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9988818|orf_249-1064", "protein_id": "molecule/9988818|orf_249-1064", "rna_call_id": "1447", "variant_amino_acid_start": 171 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1615", "protein_id": "072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1615", "rna_call_id": "8811", "variant_amino_acid_start": 432 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1b81241b-bf7f-409f-8a1b-d65a7bab6c11_0|orf_17-1615", "protein_id": "1b81241b-bf7f-409f-8a1b-d65a7bab6c11_0|orf_17-1615", "rna_call_id": "8913", "variant_amino_acid_start": 432 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3b9adb7d-f283-4ef6-8c04-930200f8655c_0|orf_31-273", "protein_id": "3b9adb7d-f283-4ef6-8c04-930200f8655c_0|orf_31-273", "rna_call_id": "9229", "variant_amino_acid_start": 23 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4cd604e9-b6dc-45d0-af6e-1731bdcc1242_0|orf_292-1896", "protein_id": "4cd604e9-b6dc-45d0-af6e-1731bdcc1242_0|orf_292-1896", "rna_call_id": "9059", "variant_amino_acid_start": 435 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "protein_id": "5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "rna_call_id": "9222", "variant_amino_acid_start": 46 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_19-1617", "protein_id": "5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_19-1617", "rna_call_id": "8850", "variant_amino_acid_start": 432 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "protein_id": "68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "rna_call_id": "9178", "variant_amino_acid_start": 136 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_5-1642", "protein_id": "85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_5-1642", "rna_call_id": "8752", "variant_amino_acid_start": 445 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8e237050-3e00-455e-b64a-abebfbd02bda_0|orf_64-1512", "protein_id": "8e237050-3e00-455e-b64a-abebfbd02bda_0|orf_64-1512", "rna_call_id": "9026", "variant_amino_acid_start": 443 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_108-1739", "protein_id": "9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_108-1739", "rna_call_id": "8788", "variant_amino_acid_start": 443 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_17-1615", "protein_id": "b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_17-1615", "rna_call_id": "8846", "variant_amino_acid_start": 432 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_100-1548", "protein_id": "bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_100-1548", "rna_call_id": "8960", "variant_amino_acid_start": 443 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_91-1722", "protein_id": "bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_91-1722", "rna_call_id": "8995", "variant_amino_acid_start": 443 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1479", "protein_id": "bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1479", "rna_call_id": "8955", "variant_amino_acid_start": 431 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "protein_id": "cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "rna_call_id": "9141", "variant_amino_acid_start": 363 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_11-1648", "protein_id": "d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_11-1648", "rna_call_id": "8749", "variant_amino_acid_start": 445 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d06de40c-5cbf-4842-9744-88490a657603_0|orf_58-300", "protein_id": "d06de40c-5cbf-4842-9744-88490a657603_0|orf_58-300", "rna_call_id": "9226", "variant_amino_acid_start": 23 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_211-651", "protein_id": "d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_211-651", "rna_call_id": "9190", "variant_amino_acid_start": 46 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_2-1378", "protein_id": "ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_2-1378", "rna_call_id": "9144", "variant_amino_acid_start": 358 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ea626a9f-1d9b-4d80-816c-62de8c451b16_0|orf_106-1737", "protein_id": "ea626a9f-1d9b-4d80-816c-62de8c451b16_0|orf_106-1737", "rna_call_id": "8888", "variant_amino_acid_start": 443 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1612", "protein_id": "072db695-1472-405f-b304-aac5c1bebdba_0|orf_17-1612", "rna_call_id": "28743", "variant_amino_acid_start": 432 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3b9adb7d-f283-4ef6-8c04-930200f8655c_0|orf_31-273", "protein_id": "3b9adb7d-f283-4ef6-8c04-930200f8655c_0|orf_31-273", "rna_call_id": "30424", "variant_amino_acid_start": 23 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "protein_id": "5d9638a6-f929-4974-83ca-de5f90d5bc79_0|orf_2-442", "rna_call_id": "30393", "variant_amino_acid_start": 46 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_805-1620", "protein_id": "5e15b742-6855-4e6d-a83c-3c97bcc8d29b_0|orf_805-1620", "rna_call_id": "28907", "variant_amino_acid_start": 171 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "protein_id": "68e80a1a-66c4-48e0-a6fc-5feb5a664e2a_0|orf_84-794", "rna_call_id": "30184", "variant_amino_acid_start": 136 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_266-1642", "protein_id": "85868fe4-403d-44c1-a4d3-543266c4df1f_0|orf_266-1642", "rna_call_id": "28518", "variant_amino_acid_start": 358 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8e237050-3e00-455e-b64a-abebfbd02bda_0|orf_64-1512", "protein_id": "8e237050-3e00-455e-b64a-abebfbd02bda_0|orf_64-1512", "rna_call_id": "29579", "variant_amino_acid_start": 443 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_587-1738", "protein_id": "9a872f6a-90e0-4164-b8a2-2211adc11ae4_0|orf_587-1738", "rna_call_id": "28933", "variant_amino_acid_start": 283 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_800-1483", "protein_id": "b354b00a-9234-4ce5-8d0d-2811795ad80b_0|orf_800-1483", "rna_call_id": "28818", "variant_amino_acid_start": 170 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_107-1549", "protein_id": "bafb36f8-5be1-4355-9e56-291a2fdb3022_0|orf_107-1549", "rna_call_id": "29303", "variant_amino_acid_start": 441 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_487-1725", "protein_id": "bb1254a1-0dee-406e-bc83-b51cfe4ae1dd_0|orf_487-1725", "rna_call_id": "29429", "variant_amino_acid_start": 312 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1608", "protein_id": "bc426d9a-1ee2-421b-ba39-8131f708c7ba_0|orf_13-1608", "rna_call_id": "29294", "variant_amino_acid_start": 431 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "protein_id": "cf342c89-47dc-4b5d-b64e-a36f34727b8d_0|orf_382-1773", "rna_call_id": "30006", "variant_amino_acid_start": 363 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_54-1520", "protein_id": "d036846d-01c2-4cd0-8fa2-cdfffe5a7917_0|orf_54-1520", "rna_call_id": "28524", "variant_amino_acid_start": 432 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d06de40c-5cbf-4842-9744-88490a657603_0|orf_52-294", "protein_id": "d06de40c-5cbf-4842-9744-88490a657603_0|orf_52-294", "rna_call_id": "30413", "variant_amino_acid_start": 23 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_208-519", "protein_id": "d39c9dc6-ec08-4b22-ab69-c5eb39b83fbe_0|orf_208-519", "rna_call_id": "30243", "variant_amino_acid_start": 46 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_564-1196", "protein_id": "ddf0c6f4-b340-47fd-8e9a-7b727c20d216_0|orf_564-1196", "rna_call_id": "30015", "variant_amino_acid_start": 170 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 16 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 16 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 2 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 21 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 21 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 26, "alt_reads": 8, "total_reads": 34, "vaf": 0.2353, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 31, "alt_reads": 0, "total_reads": 31, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 27, "alt_reads": 8, "total_reads": 35, "vaf": 0.2286, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 26, "alt_reads": 8, "total_reads": 34, "vaf": 0.2353, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 5, "alt_reads": 3, "total_reads": 8, "vaf": 0.375, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 10, "alt_reads": 10, "total_reads": 20, "vaf": 0.5, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 4, "alt_reads": 2, "total_reads": 6, "vaf": 0.3333, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 9, "alt_reads": 1, "total_reads": 10, "vaf": 0.1, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 18, "alt_reads": 4, "total_reads": 22, "vaf": 0.1818, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 4, "alt_reads": 1, "total_reads": 5, "vaf": 0.2, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 7, "alt_reads": 0, "total_reads": 7, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 101, "alt_reads": 16, "total_reads": 117, "vaf": 0.1368, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 146, "alt_reads": 21, "total_reads": 168, "vaf": 0.125, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 111, "alt_reads": 0, "total_reads": 112, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 21, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 16, "category": "multiple", "sid_alt_reads": 16, "exacto_raw_rnas": 16 }, "T2-ONT": { "max_alt_reads": 21, "category": "multiple", "sid_alt_reads": 21, "exacto_raw_rnas": 21 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 2 }, "T2-ILMN": { "max_alt_reads": 10, "category": "multiple", "sid_alt_reads": 10, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "PTH1R-chr3-46898732", "gene": "PTH1R", "chrom": "chr3", "pos": 46898732, "ref": "A", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ile237Phe", "consequence": "missense_variant", "vaccines": [ "JLF V3" ], "published_vaccine_peptides": [ { "peptide_id": "PTH1R-chr3-46898732.peptide-1", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "SFMLRAVSFFVKDAVLYSGAKKK", "scoring_region": { "sequence": "SFMLRAVSFFVKDAVLYSGA", "start": 0, "end": 20, "terminal_tags": [ { "terminus": "C", "start": 20, "end": 23, "sequence": "KKK" } ] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/29863430-01c0-4e60-a76e-73806b2eb778_0|orf_103-1320", "protein_id": "29863430-01c0-4e60-a76e-73806b2eb778_0|orf_103-1320", "rna_call_id": "27773", "amino_acid_starts": [ 41 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/36dd17c7-b040-4472-9e1b-392a28d61036_0|orf_628-1254", "protein_id": "36dd17c7-b040-4472-9e1b-392a28d61036_0|orf_628-1254", "rna_call_id": "25011", "amino_acid_starts": [ 41 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3f5c0d19-0fac-4e7a-8fb1-dfb80db80820_0|orf_193-1410", "protein_id": "3f5c0d19-0fac-4e7a-8fb1-dfb80db80820_0|orf_193-1410", "rna_call_id": "27362", "amino_acid_starts": [ 41 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/49d41f4e-cac0-4f4d-bcf8-a7da3cb02d59_0|orf_257-1474", "protein_id": "49d41f4e-cac0-4f4d-bcf8-a7da3cb02d59_0|orf_257-1474", "rna_call_id": "27231", "amino_acid_starts": [ 41 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5be35184-07ec-4868-9e07-77e7022e3bd0_0|orf_143-325", "protein_id": "5be35184-07ec-4868-9e07-77e7022e3bd0_0|orf_143-325", "rna_call_id": "28005", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/62aa7db6-24fd-44a6-a28f-88ad2da1f0ae_0|orf_273-1253", "protein_id": "62aa7db6-24fd-44a6-a28f-88ad2da1f0ae_0|orf_273-1253", "rna_call_id": "26268", "amino_acid_starts": [ 62 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9d81ec89-0576-401a-80ee-39c7942f21a1_0|orf_235-1335", "protein_id": "9d81ec89-0576-401a-80ee-39c7942f21a1_0|orf_235-1335", "rna_call_id": "23175", "amino_acid_starts": [ 198 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9f5a3bea-c850-4c99-b79f-a7c9c543a90e_0|orf_165-1607", "protein_id": "9f5a3bea-c850-4c99-b79f-a7c9c543a90e_0|orf_165-1607", "rna_call_id": "27034", "amino_acid_starts": [ 94 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a9f68257-cc93-45df-a17f-827ca399c4fa_0|orf_389-1558", "protein_id": "a9f68257-cc93-45df-a17f-827ca399c4fa_0|orf_389-1558", "rna_call_id": "22622", "amino_acid_starts": [ 198 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bfb54451-9a28-4683-99c0-54273114b797_0|orf_323-1558", "protein_id": "bfb54451-9a28-4683-99c0-54273114b797_0|orf_323-1558", "rna_call_id": "22868", "amino_acid_starts": [ 198 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c8b63fd4-61f2-4ec3-930f-74751f25cb5b_0|orf_705-1361", "protein_id": "c8b63fd4-61f2-4ec3-930f-74751f25cb5b_0|orf_705-1361", "rna_call_id": "23277", "amino_acid_starts": [ 41 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10053490|orf_302-1708", "protein_id": "molecule/10053490|orf_302-1708", "rna_call_id": "2260", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10448657|orf_320-2101", "protein_id": "molecule/10448657|orf_320-2101", "rna_call_id": "1839", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10518723|orf_300-2081", "protein_id": "molecule/10518723|orf_300-2081", "rna_call_id": "2896", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10860455|orf_193-1974", "protein_id": "molecule/10860455|orf_193-1974", "rna_call_id": "3725", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1668310|orf_301-2082", "protein_id": "molecule/1668310|orf_301-2082", "rna_call_id": "2331", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2307456|orf_857-1702", "protein_id": "molecule/2307456|orf_857-1702", "rna_call_id": "3735", "amino_acid_starts": [ 6 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3312891|orf_187-1968", "protein_id": "molecule/3312891|orf_187-1968", "rna_call_id": "3807", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4484901|orf_301-2082", "protein_id": "molecule/4484901|orf_301-2082", "rna_call_id": "2498", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5316176|orf_301-2082", "protein_id": "molecule/5316176|orf_301-2082", "rna_call_id": "2557", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5912978|orf_271-1587", "protein_id": "molecule/5912978|orf_271-1587", "rna_call_id": "3881", "amino_acid_starts": [ 198 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6041878|orf_865-2148", "protein_id": "molecule/6041878|orf_865-2148", "rna_call_id": "2010", "amino_acid_starts": [ 41 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6041883|orf_301-2082", "protein_id": "molecule/6041883|orf_301-2082", "rna_call_id": "2599", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6359157|orf_263-2044", "protein_id": "molecule/6359157|orf_263-2044", "rna_call_id": "1587", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6429240|orf_259-2070", "protein_id": "molecule/6429240|orf_259-2070", "rna_call_id": "1618", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6703896|orf_287-1693", "protein_id": "molecule/6703896|orf_287-1693", "rna_call_id": "3263", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/871332|orf_204-1985", "protein_id": "molecule/871332|orf_204-1985", "rna_call_id": "3650", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/875893|orf_899-1846", "protein_id": "molecule/875893|orf_899-1846", "rna_call_id": "3023", "amino_acid_starts": [ 41 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8973334|orf_209-1540", "protein_id": "molecule/8973334|orf_209-1540", "rna_call_id": "3556", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8993491|orf_45-1931", "protein_id": "molecule/8993491|orf_45-1931", "rna_call_id": "3995", "amino_acid_starts": [ 242 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9482727|orf_14-1795", "protein_id": "molecule/9482727|orf_14-1795", "rna_call_id": "4006", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9496445|orf_302-1708", "protein_id": "molecule/9496445|orf_302-1708", "rna_call_id": "2256", "amino_acid_starts": [ 229 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9902043|orf_924-2036", "protein_id": "molecule/9902043|orf_924-2036", "rna_call_id": "1729", "amino_acid_starts": [ 6 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9948047|orf_208-1722", "protein_id": "molecule/9948047|orf_208-1722", "rna_call_id": "3581", "amino_acid_starts": [ 229 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/29863430-01c0-4e60-a76e-73806b2eb778_0|orf_103-1320", "protein_id": "29863430-01c0-4e60-a76e-73806b2eb778_0|orf_103-1320", "rna_call_id": "27773", "variant_amino_acid_start": 49 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/36dd17c7-b040-4472-9e1b-392a28d61036_0|orf_628-1254", "protein_id": "36dd17c7-b040-4472-9e1b-392a28d61036_0|orf_628-1254", "rna_call_id": "25011", "variant_amino_acid_start": 49 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3f5c0d19-0fac-4e7a-8fb1-dfb80db80820_0|orf_193-1410", "protein_id": "3f5c0d19-0fac-4e7a-8fb1-dfb80db80820_0|orf_193-1410", "rna_call_id": "27362", "variant_amino_acid_start": 49 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/49d41f4e-cac0-4f4d-bcf8-a7da3cb02d59_0|orf_257-1474", "protein_id": "49d41f4e-cac0-4f4d-bcf8-a7da3cb02d59_0|orf_257-1474", "rna_call_id": "27231", "variant_amino_acid_start": 49 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5be35184-07ec-4868-9e07-77e7022e3bd0_0|orf_143-325", "protein_id": "5be35184-07ec-4868-9e07-77e7022e3bd0_0|orf_143-325", "rna_call_id": "28005", "variant_amino_acid_start": 14 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/62aa7db6-24fd-44a6-a28f-88ad2da1f0ae_0|orf_273-1253", "protein_id": "62aa7db6-24fd-44a6-a28f-88ad2da1f0ae_0|orf_273-1253", "rna_call_id": "26268", "variant_amino_acid_start": 70 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/63f84d9d-782a-4744-ae02-e4f4b966a222_0|orf_770-1894", "protein_id": "63f84d9d-782a-4744-ae02-e4f4b966a222_0|orf_770-1894", "rna_call_id": "25197", "variant_amino_acid_start": 7 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9d81ec89-0576-401a-80ee-39c7942f21a1_0|orf_235-1335", "protein_id": "9d81ec89-0576-401a-80ee-39c7942f21a1_0|orf_235-1335", "rna_call_id": "23175", "variant_amino_acid_start": 206 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9f5a3bea-c850-4c99-b79f-a7c9c543a90e_0|orf_165-1607", "protein_id": "9f5a3bea-c850-4c99-b79f-a7c9c543a90e_0|orf_165-1607", "rna_call_id": "27034", "variant_amino_acid_start": 102 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a9f68257-cc93-45df-a17f-827ca399c4fa_0|orf_389-1558", "protein_id": "a9f68257-cc93-45df-a17f-827ca399c4fa_0|orf_389-1558", "rna_call_id": "22622", "variant_amino_acid_start": 206 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bfb54451-9a28-4683-99c0-54273114b797_0|orf_323-1558", "protein_id": "bfb54451-9a28-4683-99c0-54273114b797_0|orf_323-1558", "rna_call_id": "22868", "variant_amino_acid_start": 206 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c8b63fd4-61f2-4ec3-930f-74751f25cb5b_0|orf_705-1361", "protein_id": "c8b63fd4-61f2-4ec3-930f-74751f25cb5b_0|orf_705-1361", "rna_call_id": "23277", "variant_amino_acid_start": 49 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10053490|orf_302-1708", "protein_id": "molecule/10053490|orf_302-1708", "rna_call_id": "2260", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10448657|orf_320-2101", "protein_id": "molecule/10448657|orf_320-2101", "rna_call_id": "1839", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10518723|orf_300-2081", "protein_id": "molecule/10518723|orf_300-2081", "rna_call_id": "2896", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10860455|orf_193-1974", "protein_id": "molecule/10860455|orf_193-1974", "rna_call_id": "3725", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1668310|orf_301-2082", "protein_id": "molecule/1668310|orf_301-2082", "rna_call_id": "2331", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2307456|orf_857-1702", "protein_id": "molecule/2307456|orf_857-1702", "rna_call_id": "3735", "variant_amino_acid_start": 14 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3312891|orf_187-1968", "protein_id": "molecule/3312891|orf_187-1968", "rna_call_id": "3807", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4484901|orf_301-2082", "protein_id": "molecule/4484901|orf_301-2082", "rna_call_id": "2498", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5316176|orf_301-2082", "protein_id": "molecule/5316176|orf_301-2082", "rna_call_id": "2557", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5912978|orf_271-1587", "protein_id": "molecule/5912978|orf_271-1587", "rna_call_id": "3881", "variant_amino_acid_start": 206 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6041878|orf_865-2148", "protein_id": "molecule/6041878|orf_865-2148", "rna_call_id": "2010", "variant_amino_acid_start": 49 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6041883|orf_301-2082", "protein_id": "molecule/6041883|orf_301-2082", "rna_call_id": "2599", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6359157|orf_263-2044", "protein_id": "molecule/6359157|orf_263-2044", "rna_call_id": "1587", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6429240|orf_259-2070", "protein_id": "molecule/6429240|orf_259-2070", "rna_call_id": "1618", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6703896|orf_287-1693", "protein_id": "molecule/6703896|orf_287-1693", "rna_call_id": "3263", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/871332|orf_204-1985", "protein_id": "molecule/871332|orf_204-1985", "rna_call_id": "3650", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/875893|orf_899-1846", "protein_id": "molecule/875893|orf_899-1846", "rna_call_id": "3023", "variant_amino_acid_start": 49 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8973334|orf_209-1540", "protein_id": "molecule/8973334|orf_209-1540", "rna_call_id": "3556", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8993491|orf_45-1931", "protein_id": "molecule/8993491|orf_45-1931", "rna_call_id": "3995", "variant_amino_acid_start": 250 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9482727|orf_14-1795", "protein_id": "molecule/9482727|orf_14-1795", "rna_call_id": "4006", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9496445|orf_302-1708", "protein_id": "molecule/9496445|orf_302-1708", "rna_call_id": "2256", "variant_amino_acid_start": 237 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9902043|orf_924-2036", "protein_id": "molecule/9902043|orf_924-2036", "rna_call_id": "1729", "variant_amino_acid_start": 14 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9948047|orf_208-1722", "protein_id": "molecule/9948047|orf_208-1722", "rna_call_id": "3581", "variant_amino_acid_start": 237 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 13 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 28 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 327, "alt_reads": 0, "total_reads": 327, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 69, "alt_reads": 0, "total_reads": 69, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 755, "alt_reads": 50, "total_reads": 807, "vaf": 0.062, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 91, "alt_reads": 0, "total_reads": 91, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 762, "alt_reads": 49, "total_reads": 813, "vaf": 0.0603, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 72, "alt_reads": 0, "total_reads": 72, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 132, "alt_reads": 0, "total_reads": 132, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 68, "alt_reads": 0, "total_reads": 68, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 92, "alt_reads": 4, "total_reads": 96, "vaf": 0.0417, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 117, "alt_reads": 0, "total_reads": 117, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 18, "alt_reads": 0, "total_reads": 19, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 360, "alt_reads": 13, "total_reads": 374, "vaf": 0.0348, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 179, "alt_reads": 0, "total_reads": 179, "vaf": 0.0, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 5, "alt_reads": 0, "total_reads": 5, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 28, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 13, "category": "multiple", "sid_alt_reads": 13, "exacto_raw_rnas": 13 }, "T2-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 28, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 28 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "ABI3BP-chr3-100850671", "gene": "ABI3BP", "chrom": "chr3", "pos": 100850671, "ref": "C", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Arg472Met", "consequence": "missense_variant", "vaccines": [ "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "ABI3BP-chr3-100850671.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 17, "sequence": "TATSDRILDSIPPKTSRTLEQPMATLAPSET", "scoring_region": { "sequence": "TATSDRILDSIPPKTSRTLEQPMATLAPSET", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [] }, { "peptide_id": "ABI3BP-chr3-100850671.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "TLEQPMATL", "scoring_region": { "sequence": "TLEQPMATL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "peptide", "residue_confirmed": false, "reconstructed_candidates": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7ded8e54-a148-4363-8209-a0bd39ad5fc0_0|orf_516-1004", "protein_id": "7ded8e54-a148-4363-8209-a0bd39ad5fc0_0|orf_516-1004", "rna_call_id": "34603", "variant_amino_acid_start": 76 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 2 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 24, "alt_reads": 0, "total_reads": 24, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 6, "alt_reads": 0, "total_reads": 6, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 39, "alt_reads": 5, "total_reads": 44, "vaf": 0.1136, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 5, "alt_reads": 0, "total_reads": 5, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 39, "alt_reads": 5, "total_reads": 44, "vaf": 0.1136, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 4, "alt_reads": 1, "total_reads": 5, "vaf": 0.2, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 6, "alt_reads": 3, "total_reads": 9, "vaf": 0.3333, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 4, "alt_reads": 1, "total_reads": 5, "vaf": 0.2, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 3, "alt_reads": 0, "total_reads": 3, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 2, "alt_reads": 0, "total_reads": 2, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 4, "alt_reads": 0, "total_reads": 4, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 8, "alt_reads": 2, "total_reads": 10, "vaf": 0.2, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 2, "alt_reads": 0, "total_reads": 2, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 3, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": 2, "exacto_raw_rnas": 2 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 3, "category": "multiple", "sid_alt_reads": 3, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "ANKRD17-chr4-73097139", "gene": "ANKRD17", "chrom": "chr4", "pos": 73097139, "ref": "C", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Gly1719Arg", "consequence": "missense_variant", "vaccines": [ "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "ANKRD17-chr4-73097139.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 17, "sequence": "PNGKLTVASPKRGQKREERWKEVVRRSKKV", "scoring_region": { "sequence": "PNGKLTVASPKRGQKREERWKEVVRRSKKV", "start": 0, "end": 30, "terminal_tags": [] }, "matches": [] }, { "peptide_id": "ANKRD17-chr4-73097139.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "ERWKEVVRR", "scoring_region": { "sequence": "ERWKEVVRR", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "peptide", "residue_confirmed": false, "reconstructed_candidates": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/508b0700-95a4-414d-a553-aeee3bfcd85e_0|orf_352-675", "protein_id": "508b0700-95a4-414d-a553-aeee3bfcd85e_0|orf_352-675", "rna_call_id": "35155", "variant_amino_acid_start": 102 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 3 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 16 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 538, "alt_reads": 2, "total_reads": 540, "vaf": 0.0037, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 864, "alt_reads": 0, "total_reads": 867, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 884, "alt_reads": 37, "total_reads": 925, "vaf": 0.04, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 84, "alt_reads": 0, "total_reads": 84, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 887, "alt_reads": 34, "total_reads": 923, "vaf": 0.0368, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 129, "alt_reads": 22, "total_reads": 152, "vaf": 0.1447, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 257, "alt_reads": 45, "total_reads": 303, "vaf": 0.1485, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 135, "alt_reads": 22, "total_reads": 157, "vaf": 0.1401, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 35, "alt_reads": 0, "total_reads": 35, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 69, "alt_reads": 8, "total_reads": 77, "vaf": 0.1039, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 10, "alt_reads": 0, "total_reads": 10, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 42, "alt_reads": 0, "total_reads": 42, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 70, "alt_reads": 1, "total_reads": 71, "vaf": 0.0141, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 143, "alt_reads": 16, "total_reads": 159, "vaf": 0.1006, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 142, "alt_reads": 0, "total_reads": 142, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 45, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T2-ONT": { "max_alt_reads": 16, "category": "multiple", "sid_alt_reads": 16, "exacto_raw_rnas": 16 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 45, "category": "multiple", "sid_alt_reads": 45, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "KDM3B-chr5-138391529", "gene": "KDM3B", "chrom": "chr5", "pos": 138391529, "ref": "C", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Pro633Ser", "consequence": "missense_variant", "vaccines": [ "CeGaT", "JLF V1", "JLF V2" ], "published_vaccine_peptides": [ { "peptide_id": "KDM3B-chr5-138391529.peptide-1", "experiments": [ { "additional_testing": "", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038R.MT.29.KDM3B", "pool": "L1", "result": "Negative", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2023-09-22", "experiment": "UNC Immune Monitoring (Spring, 2024)", "outcomes": "Observed reactivity to MAP2 / TECPR1; no sequencing performed", "pbmcs_label": "(2023/09/22, 2023/11/28)", "peptide_id": "JLF-100-038R.MT.29.KDM3B.1", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs stimulated with 9 pooled CSBio long peptides. ELISPOT performed with individual peptide stimulation." }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.29.KDM3B.1", "pool": "NA", "result": "Positive (Strong)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2", "JLF V1" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "HENLFLQPPKLSREESSNPFLAFVEK", "scoring_region": { "sequence": "HENLFLQPPKLSREESSNPFLAFVEK", "start": 0, "end": 26, "terminal_tags": [] }, "matches": [] }, { "peptide_id": "KDM3B-chr5-138391529.peptide-2", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "PPKLSREESSNPFLAFV", "scoring_region": { "sequence": "PPKLSREESSNPFLAFV", "start": 0, "end": 17, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "no_call", "residue_confirmed": null, "reconstructed_candidates": [], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 103, "alt_reads": 31, "total_reads": 136, "vaf": 0.2279, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 1132, "alt_reads": 3, "total_reads": 1135, "vaf": 0.0026, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 329, "alt_reads": 0, "total_reads": 332, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 55, "alt_reads": 6, "total_reads": 61, "vaf": 0.0984, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 327, "alt_reads": 0, "total_reads": 329, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 79, "alt_reads": 0, "total_reads": 79, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 169, "alt_reads": 0, "total_reads": 170, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 82, "alt_reads": 0, "total_reads": 82, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 86, "alt_reads": 0, "total_reads": 86, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 114, "alt_reads": 0, "total_reads": 114, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 17, "alt_reads": 0, "total_reads": 17, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 138, "alt_reads": 0, "total_reads": 138, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 16, "alt_reads": 0, "total_reads": 16, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 23, "alt_reads": 0, "total_reads": 23, "vaf": 0.0, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 17, "alt_reads": 0, "total_reads": 17, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 0, "category": "zero", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "WWC1-chr5-168399513", "gene": "WWC1", "chrom": "chr5", "pos": 168399513, "ref": "T", "alt": "G", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Val179Gly", "consequence": "missense_variant", "vaccines": [ "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "WWC1-chr5-168399513.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 17, "sequence": "AEIATAKSRVNKLKREMGHLQHELQFKERGF", "scoring_region": { "sequence": "AEIATAKSRVNKLKREMGHLQHELQFKERGF", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/de456efb-25e9-457f-88b0-be99553d802f_0|orf_277-930", "protein_id": "de456efb-25e9-457f-88b0-be99553d802f_0|orf_277-930", "rna_call_id": "44015", "amino_acid_starts": [ 162 ] } ] }, { "peptide_id": "WWC1-chr5-168399513.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "GHLQHELQF", "scoring_region": { "sequence": "GHLQHELQF", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/de456efb-25e9-457f-88b0-be99553d802f_0|orf_277-930", "protein_id": "de456efb-25e9-457f-88b0-be99553d802f_0|orf_277-930", "rna_call_id": "44015", "amino_acid_starts": [ 179 ] } ] }, { "peptide_id": "WWC1-chr5-168399513.peptide-3", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 7, "sequence": "NKLKREMGHLQHELQFKERG", "scoring_region": { "sequence": "NKLKREMGHLQHELQFKERG", "start": 0, "end": 20, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/de456efb-25e9-457f-88b0-be99553d802f_0|orf_277-930", "protein_id": "de456efb-25e9-457f-88b0-be99553d802f_0|orf_277-930", "rna_call_id": "44015", "amino_acid_starts": [ 172 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a0dc8337-844f-4153-a293-1e0cf5c6194d_0|orf_3027-3371", "protein_id": "a0dc8337-844f-4153-a293-1e0cf5c6194d_0|orf_3027-3371", "rna_call_id": "33400", "variant_amino_acid_start": 44 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/de456efb-25e9-457f-88b0-be99553d802f_0|orf_277-930", "protein_id": "de456efb-25e9-457f-88b0-be99553d802f_0|orf_277-930", "rna_call_id": "44015", "variant_amino_acid_start": 179 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 2 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 56, "alt_reads": 0, "total_reads": 56, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 285, "alt_reads": 1, "total_reads": 287, "vaf": 0.0035, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 31, "alt_reads": 5, "total_reads": 37, "vaf": 0.1351, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 54, "alt_reads": 0, "total_reads": 54, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 31, "alt_reads": 5, "total_reads": 36, "vaf": 0.1389, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 6, "alt_reads": 2, "total_reads": 8, "vaf": 0.25, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 7, "alt_reads": 2, "total_reads": 9, "vaf": 0.2222, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 6, "alt_reads": 2, "total_reads": 8, "vaf": 0.25, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 8, "alt_reads": 0, "total_reads": 8, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 10, "alt_reads": 0, "total_reads": 10, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 0, "alt_reads": 2, "total_reads": 2, "vaf": 1.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 4, "alt_reads": 1, "total_reads": 5, "vaf": 0.2, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 4, "alt_reads": 2, "total_reads": 6, "vaf": 0.3333, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 2, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T2-ONT": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": 2, "exacto_raw_rnas": 2 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": 2, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "H1_2-chr6-26055824", "gene": "H1-2", "chrom": "chr6", "pos": 26055824, "ref": "ACCTTGGGCTTAGCGG", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ala197_Lys201del", "consequence": "inframe_deletion", "vaccines": [ "CeGaT" ], "published_vaccine_peptides": [ { "peptide_id": "H1_2-chr6-26055824.peptide-1", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "AAKAVKPKVVKPKKAA", "scoring_region": { "sequence": "AAKAVKPKVVKPKKAA", "start": 0, "end": 16, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/844|orf_44-670", "protein_id": "844|orf_44-670", "rna_call_id": "6406", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/3946|orf_55-681", "protein_id": "3946|orf_55-681", "rna_call_id": "17855", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/3948|orf_93-788", "protein_id": "3948|orf_93-788", "rna_call_id": "17866", "amino_acid_starts": [ 212 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669", "protein_id": "0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669", "rna_call_id": "10553", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/07221c19-a06c-4c60-926c-1c99f30decba_0|orf_44-670", "protein_id": "07221c19-a06c-4c60-926c-1c99f30decba_0|orf_44-670", "rna_call_id": "10035", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/087b22fd-a293-4c2b-9715-31a029618a13_0|orf_44-670", "protein_id": "087b22fd-a293-4c2b-9715-31a029618a13_0|orf_44-670", "rna_call_id": "9977", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0902d3e1-f88a-42e8-b12a-0d7411cef3c2_0|orf_47-673", "protein_id": "0902d3e1-f88a-42e8-b12a-0d7411cef3c2_0|orf_47-673", "rna_call_id": "10191", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0e5b2ee2-7047-47fb-9b21-26672a685d22_0|orf_44-670", "protein_id": "0e5b2ee2-7047-47fb-9b21-26672a685d22_0|orf_44-670", "rna_call_id": "11260", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675", "protein_id": "0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675", "rna_call_id": "10350", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/17fde470-2d2f-44b8-81d3-7446ae3f8c5f_0|orf_44-670", "protein_id": "17fde470-2d2f-44b8-81d3-7446ae3f8c5f_0|orf_44-670", "rna_call_id": "10700", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-673", "protein_id": "1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-673", "rna_call_id": "11254", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/260bc0d5-74b8-458d-8a89-23be5d847b3c_0|orf_49-675", "protein_id": "260bc0d5-74b8-458d-8a89-23be5d847b3c_0|orf_49-675", "rna_call_id": "11044", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670", "protein_id": "279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670", "rna_call_id": "10816", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/293bf4c4-e7c0-4136-bff3-a82ab6b4b1ea_0|orf_47-673", "protein_id": "293bf4c4-e7c0-4136-bff3-a82ab6b4b1ea_0|orf_47-673", "rna_call_id": "10137", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673", "protein_id": "2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673", "rna_call_id": "10155", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2d039f4a-6c2c-4b03-b6c1-125a33099818_0|orf_43-669", "protein_id": "2d039f4a-6c2c-4b03-b6c1-125a33099818_0|orf_43-669", "rna_call_id": "10245", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669", "protein_id": "3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669", "rna_call_id": "10849", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3961dbeb-b7fd-4458-ad3c-d798766f9a19_0|orf_49-675", "protein_id": "3961dbeb-b7fd-4458-ad3c-d798766f9a19_0|orf_49-675", "rna_call_id": "10780", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3a8a5143-37d2-408c-a67e-56478c9ff4ae_0|orf_48-674", "protein_id": "3a8a5143-37d2-408c-a67e-56478c9ff4ae_0|orf_48-674", "rna_call_id": "11356", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3b62d6cd-157e-45e9-be59-319f24a539d8_0|orf_43-669", "protein_id": "3b62d6cd-157e-45e9-be59-319f24a539d8_0|orf_43-669", "rna_call_id": "10928", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3d811ec8-6f16-46a1-810d-89b8c12b1d85_0|orf_43-669", "protein_id": "3d811ec8-6f16-46a1-810d-89b8c12b1d85_0|orf_43-669", "rna_call_id": "10862", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670", "protein_id": "3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670", "rna_call_id": "10498", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673", "protein_id": "3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673", "rna_call_id": "11456", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4357959e-9607-4ce6-b605-b99dabd038ec_0|orf_47-673", "protein_id": "4357959e-9607-4ce6-b605-b99dabd038ec_0|orf_47-673", "rna_call_id": "10195", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4825f9b4-eab1-4402-a0cd-500f181c6fe3_0|orf_43-651", "protein_id": "4825f9b4-eab1-4402-a0cd-500f181c6fe3_0|orf_43-651", "rna_call_id": "10690", "amino_acid_starts": [ 183 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4a924a47-aa14-43cf-80a8-9e05c1b973d1_0|orf_47-673", "protein_id": "4a924a47-aa14-43cf-80a8-9e05c1b973d1_0|orf_47-673", "rna_call_id": "10968", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4b31b2a5-29a5-4311-b845-833cf9294358_0|orf_43-669", "protein_id": "4b31b2a5-29a5-4311-b845-833cf9294358_0|orf_43-669", "rna_call_id": "11474", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4d888581-850f-4cce-8485-0977db44ca29_0|orf_49-675", "protein_id": "4d888581-850f-4cce-8485-0977db44ca29_0|orf_49-675", "rna_call_id": "10784", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/51632d48-b427-4a80-abe3-e02916ccbc69_0|orf_73-699", "protein_id": "51632d48-b427-4a80-abe3-e02916ccbc69_0|orf_73-699", "rna_call_id": "10073", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/52c61f84-0a35-43a5-84d9-4d2ecb8f7d4e_0|orf_49-675", "protein_id": "52c61f84-0a35-43a5-84d9-4d2ecb8f7d4e_0|orf_49-675", "rna_call_id": "11488", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5418683c-affa-4273-bf81-cf027643e81f_0|orf_47-673", "protein_id": "5418683c-affa-4273-bf81-cf027643e81f_0|orf_47-673", "rna_call_id": "10962", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/56780a19-5a31-43c8-b9be-6ebc896c3012_0|orf_43-669", "protein_id": "56780a19-5a31-43c8-b9be-6ebc896c3012_0|orf_43-669", "rna_call_id": "10262", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/59406cd0-1f81-4df2-bb71-2dc45b30e394_0|orf_30-656", "protein_id": "59406cd0-1f81-4df2-bb71-2dc45b30e394_0|orf_30-656", "rna_call_id": "10846", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-673", "protein_id": "597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-673", "rna_call_id": "10739", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5cb71db8-55e7-4dd1-a528-42af3ad19de7_0|orf_44-670", "protein_id": "5cb71db8-55e7-4dd1-a528-42af3ad19de7_0|orf_44-670", "rna_call_id": "10676", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5d84450e-5103-4c7e-81a3-1d859bc3a687_0|orf_48-674", "protein_id": "5d84450e-5103-4c7e-81a3-1d859bc3a687_0|orf_48-674", "rna_call_id": "10855", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6135d740-094c-4a32-ba29-810ce10c83a5_0|orf_44-670", "protein_id": "6135d740-094c-4a32-ba29-810ce10c83a5_0|orf_44-670", "rna_call_id": "10813", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/630bedda-bee2-4954-81e3-547a7a4542a4_0|orf_44-670", "protein_id": "630bedda-bee2-4954-81e3-547a7a4542a4_0|orf_44-670", "rna_call_id": "10841", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/68975354-e52a-42cf-80bc-46588e084cf1_0|orf_448-1140", "protein_id": "68975354-e52a-42cf-80bc-46588e084cf1_0|orf_448-1140", "rna_call_id": "11398", "amino_acid_starts": [ 211 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6a268bf2-2a3e-482f-9616-5956e8a2250f_0|orf_44-670", "protein_id": "6a268bf2-2a3e-482f-9616-5956e8a2250f_0|orf_44-670", "rna_call_id": "10016", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675", "protein_id": "6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675", "rna_call_id": "9986", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_255-671", "protein_id": "6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_255-671", "rna_call_id": "11024", "amino_acid_starts": [ 119 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/73f6044f-38ee-47d0-aa41-daeb02d25632_0|orf_47-673", "protein_id": "73f6044f-38ee-47d0-aa41-daeb02d25632_0|orf_47-673", "rna_call_id": "11048", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/83dff833-2718-4993-afce-b63764344099_0|orf_47-673", "protein_id": "83dff833-2718-4993-afce-b63764344099_0|orf_47-673", "rna_call_id": "10229", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670", "protein_id": "849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670", "rna_call_id": "10671", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670", "protein_id": "87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670", "rna_call_id": "11201", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/89c3cfdc-9577-425b-9635-0aadfd160dd9_0|orf_48-674", "protein_id": "89c3cfdc-9577-425b-9635-0aadfd160dd9_0|orf_48-674", "rna_call_id": "10579", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/89f2e4b1-73e0-4766-8ebe-25b613377c13_0|orf_43-669", "protein_id": "89f2e4b1-73e0-4766-8ebe-25b613377c13_0|orf_43-669", "rna_call_id": "10993", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-675", "protein_id": "8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-675", "rna_call_id": "10733", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/90dfb37b-dd9c-4782-8161-62f94cdf33e7_0|orf_44-670", "protein_id": "90dfb37b-dd9c-4782-8161-62f94cdf33e7_0|orf_44-670", "rna_call_id": "11265", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/953ad68e-6f5a-432f-a101-d8b55521c923_0|orf_36-662", "protein_id": "953ad68e-6f5a-432f-a101-d8b55521c923_0|orf_36-662", "rna_call_id": "10019", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/95508ff9-b9a0-4078-8c23-c061ab4a77b6_0|orf_20-697", "protein_id": "95508ff9-b9a0-4078-8c23-c061ab4a77b6_0|orf_20-697", "rna_call_id": "10612", "amino_acid_starts": [ 206 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/95c406c1-5b10-4790-8088-4e5180dccdcb_0|orf_47-673", "protein_id": "95c406c1-5b10-4790-8088-4e5180dccdcb_0|orf_47-673", "rna_call_id": "10182", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/996b7767-bcba-4be7-9ee1-b99a8abf9719_0|orf_49-675", "protein_id": "996b7767-bcba-4be7-9ee1-b99a8abf9719_0|orf_49-675", "rna_call_id": "10022", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_49-675", "protein_id": "99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_49-675", "rna_call_id": "10821", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669", "protein_id": "9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669", "rna_call_id": "10629", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9ecf34d8-c6e5-4322-ad0e-e113fdf29b3f_0|orf_44-670", "protein_id": "9ecf34d8-c6e5-4322-ad0e-e113fdf29b3f_0|orf_44-670", "rna_call_id": "11011", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669", "protein_id": "a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669", "rna_call_id": "10697", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a6de019a-9d88-4bec-837d-4fee7007615b_0|orf_44-670", "protein_id": "a6de019a-9d88-4bec-837d-4fee7007615b_0|orf_44-670", "rna_call_id": "11192", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-674", "protein_id": "a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-674", "rna_call_id": "10094", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a783655f-207e-48b4-849e-e4bb57720778_0|orf_43-669", "protein_id": "a783655f-207e-48b4-849e-e4bb57720778_0|orf_43-669", "rna_call_id": "11493", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a95e9948-a37b-478a-a432-b49d9ff178e7_0|orf_44-670", "protein_id": "a95e9948-a37b-478a-a432-b49d9ff178e7_0|orf_44-670", "rna_call_id": "10827", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673", "protein_id": "ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673", "rna_call_id": "9982", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670", "protein_id": "acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670", "rna_call_id": "10131", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/aee1d64e-0663-4d0b-b21a-ded58f3d1f29_0|orf_48-674", "protein_id": "aee1d64e-0663-4d0b-b21a-ded58f3d1f29_0|orf_48-674", "rna_call_id": "10641", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/af46850a-2e2f-471b-adc9-a40cd8777f1c_0|orf_43-669", "protein_id": "af46850a-2e2f-471b-adc9-a40cd8777f1c_0|orf_43-669", "rna_call_id": "10186", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674", "protein_id": "af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674", "rna_call_id": "10202", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670", "protein_id": "b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670", "rna_call_id": "10128", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673", "protein_id": "b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673", "rna_call_id": "10172", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b461cead-1b21-45f0-9ae5-4a83da8ca9e8_0|orf_44-670", "protein_id": "b461cead-1b21-45f0-9ae5-4a83da8ca9e8_0|orf_44-670", "rna_call_id": "10242", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b6836833-252e-45cf-90be-b7f220ed8d50_0|orf_44-670", "protein_id": "b6836833-252e-45cf-90be-b7f220ed8d50_0|orf_44-670", "rna_call_id": "10069", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673", "protein_id": "b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673", "rna_call_id": "11303", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b876b8a7-5fc0-4a14-8c45-e91de2d213fb_0|orf_44-670", "protein_id": "b876b8a7-5fc0-4a14-8c45-e91de2d213fb_0|orf_44-670", "rna_call_id": "10208", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b93b3cfb-9c03-4af3-90bd-5c43faafb586_0|orf_44-670", "protein_id": "b93b3cfb-9c03-4af3-90bd-5c43faafb586_0|orf_44-670", "rna_call_id": "10443", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651", "protein_id": "bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651", "rna_call_id": "11244", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_44-670", "protein_id": "bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_44-670", "rna_call_id": "10777", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662", "protein_id": "bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662", "rna_call_id": "10859", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c264799c-cddf-49ee-b108-cda27354123e_0|orf_44-670", "protein_id": "c264799c-cddf-49ee-b108-cda27354123e_0|orf_44-670", "rna_call_id": "10592", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_50-676", "protein_id": "c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_50-676", "rna_call_id": "11387", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670", "protein_id": "c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670", "rna_call_id": "10179", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-670", "protein_id": "c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-670", "rna_call_id": "10694", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633", "protein_id": "ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633", "rna_call_id": "10938", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-670", "protein_id": "cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-670", "rna_call_id": "10495", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cbafe623-503b-46ec-a57e-79df5e4297bb_0|orf_49-675", "protein_id": "cbafe623-503b-46ec-a57e-79df5e4297bb_0|orf_49-675", "rna_call_id": "10913", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cc9eb3ce-d494-4233-9708-7112dde283e9_0|orf_46-672", "protein_id": "cc9eb3ce-d494-4233-9708-7112dde283e9_0|orf_46-672", "rna_call_id": "10996", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670", "protein_id": "cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670", "rna_call_id": "11158", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670", "protein_id": "d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670", "rna_call_id": "10117", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669", "protein_id": "d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669", "rna_call_id": "10668", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d7b09f07-90a0-4c7f-b83c-5990feee6ac7_1|orf_48-674", "protein_id": "d7b09f07-90a0-4c7f-b83c-5990feee6ac7_1|orf_48-674", "rna_call_id": "10233", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670", "protein_id": "d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670", "rna_call_id": "9957", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/da578df2-44a8-40c9-aedc-25a3eb7fefb3_0|orf_44-670", "protein_id": "da578df2-44a8-40c9-aedc-25a3eb7fefb3_0|orf_44-670", "rna_call_id": "10632", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/db018663-ed5f-4abb-81ac-4c9c5192228f_0|orf_44-670", "protein_id": "db018663-ed5f-4abb-81ac-4c9c5192228f_0|orf_44-670", "rna_call_id": "10922", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dbabc853-5a86-423c-9f50-30b1cd95b7ee_0|orf_44-670", "protein_id": "dbabc853-5a86-423c-9f50-30b1cd95b7ee_0|orf_44-670", "rna_call_id": "10878", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e0fc0075-f849-4ff3-9e61-97fbf7390aeb_0|orf_47-673", "protein_id": "e0fc0075-f849-4ff3-9e61-97fbf7390aeb_0|orf_47-673", "rna_call_id": "11394", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670", "protein_id": "e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670", "rna_call_id": "11300", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669", "protein_id": "e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669", "rna_call_id": "10088", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670", "protein_id": "e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670", "rna_call_id": "10651", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e9281592-9005-4993-955b-3ce53224ec5a_0|orf_49-675", "protein_id": "e9281592-9005-4993-955b-3ce53224ec5a_0|orf_49-675", "rna_call_id": "10518", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ecb4f698-0298-4069-8813-2f64c22ceecd_0|orf_44-670", "protein_id": "ecb4f698-0298-4069-8813-2f64c22ceecd_0|orf_44-670", "rna_call_id": "11030", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-670", "protein_id": "ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-670", "rna_call_id": "11222", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670", "protein_id": "f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670", "rna_call_id": "10105", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f40b9f75-c699-4785-a396-a2c7e1faa904_0|orf_44-670", "protein_id": "f40b9f75-c699-4785-a396-a2c7e1faa904_0|orf_44-670", "rna_call_id": "10726", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673", "protein_id": "f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673", "rna_call_id": "10720", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674", "protein_id": "f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674", "rna_call_id": "11231", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fa660ceb-1d1b-407b-91d5-dfae44515c0d_0|orf_25-651", "protein_id": "fa660ceb-1d1b-407b-91d5-dfae44515c0d_0|orf_25-651", "rna_call_id": "10032", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fbb9b78b-80ce-4e93-b6c4-d5f617e28ab4_0|orf_255-665", "protein_id": "fbb9b78b-80ce-4e93-b6c4-d5f617e28ab4_0|orf_255-665", "rna_call_id": "10683", "amino_acid_starts": [ 117 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fdb4c4d3-0978-4aba-b315-4cf6e0d555fc_0|orf_44-670", "protein_id": "fdb4c4d3-0978-4aba-b315-4cf6e0d555fc_0|orf_44-670", "rna_call_id": "10041", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-673", "protein_id": "ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-673", "rna_call_id": "10752", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "isonform", "reconstruction_id": "T1-ONT/isonform/3_0_19|orf_15-695", "protein_id": "3_0_19|orf_15-695", "rna_call_id": "226", "amino_acid_starts": [ 207 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669", "protein_id": "0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669", "rna_call_id": "37114", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675", "protein_id": "0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675", "rna_call_id": "35192", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-676", "protein_id": "1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-676", "rna_call_id": "37597", "amino_acid_starts": [ 190 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670", "protein_id": "279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670", "rna_call_id": "36342", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673", "protein_id": "2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673", "rna_call_id": "34653", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669", "protein_id": "3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669", "rna_call_id": "34870", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670", "protein_id": "3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670", "rna_call_id": "35036", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673", "protein_id": "3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673", "rna_call_id": "38093", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-670", "protein_id": "597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-670", "rna_call_id": "36485", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675", "protein_id": "6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675", "rna_call_id": "33939", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_388-669", "protein_id": "6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_388-669", "rna_call_id": "35664", "amino_acid_starts": [ 74 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670", "protein_id": "849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670", "rna_call_id": "36860", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670", "protein_id": "87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670", "rna_call_id": "37329", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-678", "protein_id": "8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-678", "rna_call_id": "36401", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_48-665", "protein_id": "99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_48-665", "rna_call_id": "36141", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669", "protein_id": "9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669", "rna_call_id": "35541", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669", "protein_id": "a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669", "rna_call_id": "36193", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-671", "protein_id": "a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-671", "rna_call_id": "34354", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673", "protein_id": "ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673", "rna_call_id": "33915", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670", "protein_id": "acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670", "rna_call_id": "34694", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674", "protein_id": "af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674", "rna_call_id": "34643", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670", "protein_id": "b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670", "rna_call_id": "34331", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673", "protein_id": "b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673", "rna_call_id": "34430", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673", "protein_id": "b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673", "rna_call_id": "37675", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651", "protein_id": "bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651", "rna_call_id": "37553", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_255-668", "protein_id": "bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_255-668", "rna_call_id": "37180", "amino_acid_starts": [ 118 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662", "protein_id": "bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662", "rna_call_id": "36299", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_261-677", "protein_id": "c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_261-677", "rna_call_id": "37904", "amino_acid_starts": [ 119 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670", "protein_id": "c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670", "rna_call_id": "34725", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-667", "protein_id": "c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-667", "rna_call_id": "37066", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633", "protein_id": "ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633", "rna_call_id": "36806", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-664", "protein_id": "cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-664", "rna_call_id": "36198", "amino_acid_starts": [ 187 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670", "protein_id": "cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670", "rna_call_id": "37239", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670", "protein_id": "d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670", "rna_call_id": "34088", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669", "protein_id": "d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669", "rna_call_id": "36014", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670", "protein_id": "d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670", "rna_call_id": "33773", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670", "protein_id": "e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670", "rna_call_id": "37628", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669", "protein_id": "e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669", "rna_call_id": "34531", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670", "protein_id": "e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670", "rna_call_id": "36287", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-667", "protein_id": "ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-667", "rna_call_id": "37311", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670", "protein_id": "f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670", "rna_call_id": "34373", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673", "protein_id": "f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673", "rna_call_id": "35150", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674", "protein_id": "f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674", "rna_call_id": "37588", "amino_acid_starts": [ 189 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-670", "protein_id": "ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-670", "rna_call_id": "37012", "amino_acid_starts": [ 188 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10064376|orf_48-674", "protein_id": "molecule/10064376|orf_48-674", "rna_call_id": "2965", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10178021|orf_46-672", "protein_id": "molecule/10178021|orf_46-672", "rna_call_id": "2988", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10189342|orf_43-669", "protein_id": "molecule/10189342|orf_43-669", "rna_call_id": "3634", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1019294|orf_43-669", "protein_id": "molecule/1019294|orf_43-669", "rna_call_id": "2773", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1019374|orf_42-668", "protein_id": "molecule/1019374|orf_42-668", "rna_call_id": "3612", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1025464|orf_43-669", "protein_id": "molecule/1025464|orf_43-669", "rna_call_id": "3760", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10343427|orf_43-669", "protein_id": "molecule/10343427|orf_43-669", "rna_call_id": "3438", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10554216|orf_29-655", "protein_id": "molecule/10554216|orf_29-655", "rna_call_id": "2753", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10602017|orf_47-673", "protein_id": "molecule/10602017|orf_47-673", "rna_call_id": "2980", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1060653|orf_43-669", "protein_id": "molecule/1060653|orf_43-669", "rna_call_id": "3010", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10717497|orf_49-675", "protein_id": "molecule/10717497|orf_49-675", "rna_call_id": "3355", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10795793|orf_48-674", "protein_id": "molecule/10795793|orf_48-674", "rna_call_id": "3364", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1080066|orf_48-674", "protein_id": "molecule/1080066|orf_48-674", "rna_call_id": "3074", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10937825|orf_43-669", "protein_id": "molecule/10937825|orf_43-669", "rna_call_id": "3610", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10965437|orf_25-651", "protein_id": "molecule/10965437|orf_25-651", "rna_call_id": "3036", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1113042|orf_43-669", "protein_id": "molecule/1113042|orf_43-669", "rna_call_id": "2994", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1113063|orf_43-669", "protein_id": "molecule/1113063|orf_43-669", "rna_call_id": "3753", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1113255|orf_10-636", "protein_id": "molecule/1113255|orf_10-636", "rna_call_id": "2838", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/115464|orf_47-673", "protein_id": "molecule/115464|orf_47-673", "rna_call_id": "2991", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1161327|orf_43-669", "protein_id": "molecule/1161327|orf_43-669", "rna_call_id": "3415", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/120934|orf_46-672", "protein_id": "molecule/120934|orf_46-672", "rna_call_id": "3077", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1214434|orf_48-674", "protein_id": "molecule/1214434|orf_48-674", "rna_call_id": "3722", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1268463|orf_46-672", "protein_id": "molecule/1268463|orf_46-672", "rna_call_id": "2830", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1319565|orf_43-669", "protein_id": "molecule/1319565|orf_43-669", "rna_call_id": "3755", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1413780|orf_19-645", "protein_id": "molecule/1413780|orf_19-645", "rna_call_id": "3472", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1538081|orf_43-669", "protein_id": "molecule/1538081|orf_43-669", "rna_call_id": "3417", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/174187|orf_46-672", "protein_id": "molecule/174187|orf_46-672", "rna_call_id": "3383", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/174199|orf_43-669", "protein_id": "molecule/174199|orf_43-669", "rna_call_id": "3747", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1801550|orf_45-671", "protein_id": "molecule/1801550|orf_45-671", "rna_call_id": "3729", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1801561|orf_43-669", "protein_id": "molecule/1801561|orf_43-669", "rna_call_id": "3440", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1882867|orf_43-669", "protein_id": "molecule/1882867|orf_43-669", "rna_call_id": "3628", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1896631|orf_46-672", "protein_id": "molecule/1896631|orf_46-672", "rna_call_id": "3738", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2243892|orf_48-674", "protein_id": "molecule/2243892|orf_48-674", "rna_call_id": "3345", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2274290|orf_43-669", "protein_id": "molecule/2274290|orf_43-669", "rna_call_id": "3630", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2277834|orf_45-671", "protein_id": "molecule/2277834|orf_45-671", "rna_call_id": "3614", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2302647|orf_46-672", "protein_id": "molecule/2302647|orf_46-672", "rna_call_id": "2997", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2369244|orf_43-669", "protein_id": "molecule/2369244|orf_43-669", "rna_call_id": "3757", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2502925|orf_45-671", "protein_id": "molecule/2502925|orf_45-671", "rna_call_id": "3603", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2579186|orf_43-669", "protein_id": "molecule/2579186|orf_43-669", "rna_call_id": "3632", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2600411|orf_11-685", "protein_id": "molecule/2600411|orf_11-685", "rna_call_id": "3683", "amino_acid_starts": [ 205 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2629266|orf_46-672", "protein_id": "molecule/2629266|orf_46-672", "rna_call_id": "2821", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2629282|orf_47-673", "protein_id": "molecule/2629282|orf_47-673", "rna_call_id": "3732", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2629287|orf_47-673", "protein_id": "molecule/2629287|orf_47-673", "rna_call_id": "3744", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/271837|orf_42-668", "protein_id": "molecule/271837|orf_42-668", "rna_call_id": "3008", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2817741|orf_44-670", "protein_id": "molecule/2817741|orf_44-670", "rna_call_id": "3783", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2904375|orf_43-669", "protein_id": "molecule/2904375|orf_43-669", "rna_call_id": "3448", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3005554|orf_43-669", "protein_id": "molecule/3005554|orf_43-669", "rna_call_id": "3419", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3031815|orf_46-672", "protein_id": "molecule/3031815|orf_46-672", "rna_call_id": "3741", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3085879|orf_43-669", "protein_id": "molecule/3085879|orf_43-669", "rna_call_id": "3617", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3158192|orf_43-669", "protein_id": "molecule/3158192|orf_43-669", "rna_call_id": "3421", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3199407|orf_43-669", "protein_id": "molecule/3199407|orf_43-669", "rna_call_id": "3762", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3246875|orf_48-674", "protein_id": "molecule/3246875|orf_48-674", "rna_call_id": "3719", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3493006|orf_28-654", "protein_id": "molecule/3493006|orf_28-654", "rna_call_id": "3033", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3496939|orf_19-645", "protein_id": "molecule/3496939|orf_19-645", "rna_call_id": "3470", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3517396|orf_48-674", "protein_id": "molecule/3517396|orf_48-674", "rna_call_id": "3735", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3580456|orf_43-669", "protein_id": "molecule/3580456|orf_43-669", "rna_call_id": "3423", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3619747|orf_49-675", "protein_id": "molecule/3619747|orf_49-675", "rna_call_id": "3348", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3619751|orf_48-674", "protein_id": "molecule/3619751|orf_48-674", "rna_call_id": "3725", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3619768|orf_43-669", "protein_id": "molecule/3619768|orf_43-669", "rna_call_id": "3084", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3650643|orf_42-668", "protein_id": "molecule/3650643|orf_42-668", "rna_call_id": "3454", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3664114|orf_42-668", "protein_id": "molecule/3664114|orf_42-668", "rna_call_id": "3090", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3748101|orf_42-668", "protein_id": "molecule/3748101|orf_42-668", "rna_call_id": "3029", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3784489|orf_44-670", "protein_id": "molecule/3784489|orf_44-670", "rna_call_id": "3405", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3902661|orf_47-673", "protein_id": "molecule/3902661|orf_47-673", "rna_call_id": "2974", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3907167|orf_47-673", "protein_id": "molecule/3907167|orf_47-673", "rna_call_id": "3587", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3909094|orf_47-673", "protein_id": "molecule/3909094|orf_47-673", "rna_call_id": "3367", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3991115|orf_47-673", "protein_id": "molecule/3991115|orf_47-673", "rna_call_id": "2767", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4068210|orf_42-668", "protein_id": "molecule/4068210|orf_42-668", "rna_call_id": "3764", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4111036|orf_43-669", "protein_id": "molecule/4111036|orf_43-669", "rna_call_id": "3012", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/412686|orf_48-674", "protein_id": "molecule/412686|orf_48-674", "rna_call_id": "3080", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4221078|orf_43-669", "protein_id": "molecule/4221078|orf_43-669", "rna_call_id": "3623", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4244472|orf_43-669", "protein_id": "molecule/4244472|orf_43-669", "rna_call_id": "3000", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4295386|orf_30-656", "protein_id": "molecule/4295386|orf_30-656", "rna_call_id": "3038", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4433251|orf_47-673", "protein_id": "molecule/4433251|orf_47-673", "rna_call_id": "2827", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4463788|orf_43-669", "protein_id": "molecule/4463788|orf_43-669", "rna_call_id": "3023", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4473974|orf_42-668", "protein_id": "molecule/4473974|orf_42-668", "rna_call_id": "3086", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4556021|orf_42-668", "protein_id": "molecule/4556021|orf_42-668", "rna_call_id": "3025", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4712523|orf_46-672", "protein_id": "molecule/4712523|orf_46-672", "rna_call_id": "3426", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5167467|orf_47-661", "protein_id": "molecule/5167467|orf_47-661", "rna_call_id": "3773", "amino_acid_starts": [ 185 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5236959|orf_43-669", "protein_id": "molecule/5236959|orf_43-669", "rna_call_id": "3450", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5303072|orf_48-674", "protein_id": "molecule/5303072|orf_48-674", "rna_call_id": "3578", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5423741|orf_48-674", "protein_id": "molecule/5423741|orf_48-674", "rna_call_id": "2968", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5497944|orf_48-674", "protein_id": "molecule/5497944|orf_48-674", "rna_call_id": "3361", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/557027|orf_49-675", "protein_id": "molecule/557027|orf_49-675", "rna_call_id": "3342", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5642927|orf_43-669", "protein_id": "molecule/5642927|orf_43-669", "rna_call_id": "3088", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5696462|orf_42-668", "protein_id": "molecule/5696462|orf_42-668", "rna_call_id": "3429", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/575063|orf_47-673", "protein_id": "molecule/575063|orf_47-673", "rna_call_id": "3358", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/575078|orf_43-669", "protein_id": "molecule/575078|orf_43-669", "rna_call_id": "3403", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5779419|orf_48-674", "protein_id": "molecule/5779419|orf_48-674", "rna_call_id": "3352", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5801272|orf_43-669", "protein_id": "molecule/5801272|orf_43-669", "rna_call_id": "3606", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5812246|orf_46-672", "protein_id": "molecule/5812246|orf_46-672", "rna_call_id": "3591", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5839747|orf_42-668", "protein_id": "molecule/5839747|orf_42-668", "rna_call_id": "3409", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6205103|orf_47-673", "protein_id": "molecule/6205103|orf_47-673", "rna_call_id": "2833", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6227211|orf_47-673", "protein_id": "molecule/6227211|orf_47-673", "rna_call_id": "3370", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6229052|orf_43-669", "protein_id": "molecule/6229052|orf_43-669", "rna_call_id": "2757", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6242703|orf_47-673", "protein_id": "molecule/6242703|orf_47-673", "rna_call_id": "3373", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6267171|orf_46-672", "protein_id": "molecule/6267171|orf_46-672", "rna_call_id": "3387", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6361521|orf_42-668", "protein_id": "molecule/6361521|orf_42-668", "rna_call_id": "3014", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6368826|orf_43-669", "protein_id": "molecule/6368826|orf_43-669", "rna_call_id": "3411", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6368908|orf_28-654", "protein_id": "molecule/6368908|orf_28-654", "rna_call_id": "3641", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6458552|orf_47-673", "protein_id": "molecule/6458552|orf_47-673", "rna_call_id": "3581", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6506733|orf_35-661", "protein_id": "molecule/6506733|orf_35-661", "rna_call_id": "3461", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6592287|orf_42-668", "protein_id": "molecule/6592287|orf_42-668", "rna_call_id": "3396", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6654287|orf_43-669", "protein_id": "molecule/6654287|orf_43-669", "rna_call_id": "3780", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6654941|orf_43-669", "protein_id": "molecule/6654941|orf_43-669", "rna_call_id": "3442", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6659006|orf_43-669", "protein_id": "molecule/6659006|orf_43-669", "rna_call_id": "3398", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6707164|orf_43-669", "protein_id": "molecule/6707164|orf_43-669", "rna_call_id": "3027", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6707170|orf_43-669", "protein_id": "molecule/6707170|orf_43-669", "rna_call_id": "3444", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6990504|orf_42-668", "protein_id": "molecule/6990504|orf_42-668", "rna_call_id": "3031", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7026565|orf_9-635", "protein_id": "molecule/7026565|orf_9-635", "rna_call_id": "3474", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7132448|orf_43-669", "protein_id": "molecule/7132448|orf_43-669", "rna_call_id": "3016", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7216973|orf_42-668", "protein_id": "molecule/7216973|orf_42-668", "rna_call_id": "2775", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7273585|orf_46-675", "protein_id": "molecule/7273585|orf_46-675", "rna_call_id": "3456", "amino_acid_starts": [ 190 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7279353|orf_46-672", "protein_id": "molecule/7279353|orf_46-672", "rna_call_id": "2977", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7541603|orf_43-669", "protein_id": "molecule/7541603|orf_43-669", "rna_call_id": "3452", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/754378|orf_47-673", "protein_id": "molecule/754378|orf_47-673", "rna_call_id": "2824", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7620765|orf_43-669", "protein_id": "molecule/7620765|orf_43-669", "rna_call_id": "3004", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7739018|orf_43-669", "protein_id": "molecule/7739018|orf_43-669", "rna_call_id": "3006", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7740558|orf_44-670", "protein_id": "molecule/7740558|orf_44-670", "rna_call_id": "3608", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7752404|orf_46-672", "protein_id": "molecule/7752404|orf_46-672", "rna_call_id": "3584", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/780783|orf_46-672", "protein_id": "molecule/780783|orf_46-672", "rna_call_id": "3749", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7967093|orf_43-669", "protein_id": "molecule/7967093|orf_43-669", "rna_call_id": "3636", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8063840|orf_45-671", "protein_id": "molecule/8063840|orf_45-671", "rna_call_id": "2770", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8063908|orf_43-669", "protein_id": "molecule/8063908|orf_43-669", "rna_call_id": "3446", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8093175|orf_43-669", "protein_id": "molecule/8093175|orf_43-669", "rna_call_id": "2836", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8154416|orf_42-668", "protein_id": "molecule/8154416|orf_42-668", "rna_call_id": "3092", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8763893|orf_43-669", "protein_id": "molecule/8763893|orf_43-669", "rna_call_id": "2983", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8763895|orf_48-674", "protein_id": "molecule/8763895|orf_48-674", "rna_call_id": "3377", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8803526|orf_43-669", "protein_id": "molecule/8803526|orf_43-669", "rna_call_id": "3599", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8904710|orf_42-668", "protein_id": "molecule/8904710|orf_42-668", "rna_call_id": "3638", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8976671|orf_43-669", "protein_id": "molecule/8976671|orf_43-669", "rna_call_id": "3432", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9254182|orf_43-669", "protein_id": "molecule/9254182|orf_43-669", "rna_call_id": "3625", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9281724|orf_43-669", "protein_id": "molecule/9281724|orf_43-669", "rna_call_id": "3601", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9344838|orf_47-673", "protein_id": "molecule/9344838|orf_47-673", "rna_call_id": "3390", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9461903|orf_43-669", "protein_id": "molecule/9461903|orf_43-669", "rna_call_id": "3434", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9535324|orf_43-669", "protein_id": "molecule/9535324|orf_43-669", "rna_call_id": "3436", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9541363|orf_47-673", "protein_id": "molecule/9541363|orf_47-673", "rna_call_id": "2971", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9541370|orf_46-672", "protein_id": "molecule/9541370|orf_46-672", "rna_call_id": "2985", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9541377|orf_46-672", "protein_id": "molecule/9541377|orf_46-672", "rna_call_id": "3393", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9559770|orf_43-669", "protein_id": "molecule/9559770|orf_43-669", "rna_call_id": "3018", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9559773|orf_43-669", "protein_id": "molecule/9559773|orf_43-669", "rna_call_id": "3413", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9665833|orf_45-671", "protein_id": "molecule/9665833|orf_45-671", "rna_call_id": "3594", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9676206|orf_48-674", "protein_id": "molecule/9676206|orf_48-674", "rna_call_id": "3071", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9716734|orf_46-672", "protein_id": "molecule/9716734|orf_46-672", "rna_call_id": "2732", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9761681|orf_42-668", "protein_id": "molecule/9761681|orf_42-668", "rna_call_id": "3021", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9853399|orf_47-673", "protein_id": "molecule/9853399|orf_47-673", "rna_call_id": "3380", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9975242|orf_43-669", "protein_id": "molecule/9975242|orf_43-669", "rna_call_id": "3401", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "isonform", "reconstruction_id": "T1-PacBio/isonform/0_0_2|orf_11-685", "protein_id": "0_0_2|orf_11-685", "rna_call_id": "125", "amino_acid_starts": [ 205 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10178021|orf_46-672", "protein_id": "molecule/10178021|orf_46-672", "rna_call_id": "5026", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1025464|orf_43-669", "protein_id": "molecule/1025464|orf_43-669", "rna_call_id": "6049", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10343427|orf_43-669", "protein_id": "molecule/10343427|orf_43-669", "rna_call_id": "5720", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10602017|orf_47-673", "protein_id": "molecule/10602017|orf_47-673", "rna_call_id": "5031", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1060653|orf_43-669", "protein_id": "molecule/1060653|orf_43-669", "rna_call_id": "4756", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10717497|orf_49-675", "protein_id": "molecule/10717497|orf_49-675", "rna_call_id": "5731", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10795793|orf_48-674", "protein_id": "molecule/10795793|orf_48-674", "rna_call_id": "5737", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1080066|orf_48-674", "protein_id": "molecule/1080066|orf_48-674", "rna_call_id": "5055", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10937825|orf_43-669", "protein_id": "molecule/10937825|orf_43-669", "rna_call_id": "5989", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1113063|orf_43-669", "protein_id": "molecule/1113063|orf_43-669", "rna_call_id": "6053", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1161327|orf_43-669", "protein_id": "molecule/1161327|orf_43-669", "rna_call_id": "5191", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/120934|orf_46-672", "protein_id": "molecule/120934|orf_46-672", "rna_call_id": "5042", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1214434|orf_48-674", "protein_id": "molecule/1214434|orf_48-674", "rna_call_id": "6075", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1268463|orf_46-672", "protein_id": "molecule/1268463|orf_46-672", "rna_call_id": "4677", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1319565|orf_43-669", "protein_id": "molecule/1319565|orf_43-669", "rna_call_id": "6079", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1538081|orf_43-669", "protein_id": "molecule/1538081|orf_43-669", "rna_call_id": "5218", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/174187|orf_46-672", "protein_id": "molecule/174187|orf_46-672", "rna_call_id": "5131", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1882867|orf_43-669", "protein_id": "molecule/1882867|orf_43-669", "rna_call_id": "5779", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1896631|orf_46-672", "protein_id": "molecule/1896631|orf_46-672", "rna_call_id": "6116", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2243892|orf_48-674", "protein_id": "molecule/2243892|orf_48-674", "rna_call_id": "5248", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2277834|orf_44-670", "protein_id": "molecule/2277834|orf_44-670", "rna_call_id": "5793", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2369244|orf_43-669", "protein_id": "molecule/2369244|orf_43-669", "rna_call_id": "6122", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2502925|orf_45-671", "protein_id": "molecule/2502925|orf_45-671", "rna_call_id": "5806", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2600411|orf_11-685", "protein_id": "molecule/2600411|orf_11-685", "rna_call_id": "6134", "amino_acid_starts": [ 205 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2629282|orf_47-673", "protein_id": "molecule/2629282|orf_47-673", "rna_call_id": "6137", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2629287|orf_47-673", "protein_id": "molecule/2629287|orf_47-673", "rna_call_id": "6140", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/271837|orf_42-668", "protein_id": "molecule/271837|orf_42-668", "rna_call_id": "4752", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3005554|orf_43-669", "protein_id": "molecule/3005554|orf_43-669", "rna_call_id": "5284", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3031815|orf_46-672", "protein_id": "molecule/3031815|orf_46-672", "rna_call_id": "6150", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3085879|orf_43-669", "protein_id": "molecule/3085879|orf_43-669", "rna_call_id": "5826", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3158192|orf_43-669", "protein_id": "molecule/3158192|orf_43-669", "rna_call_id": "5286", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3246875|orf_259-675", "protein_id": "molecule/3246875|orf_259-675", "rna_call_id": "6163", "amino_acid_starts": [ 119 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3493006|orf_28-654", "protein_id": "molecule/3493006|orf_28-654", "rna_call_id": "4815", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3496939|orf_19-645", "protein_id": "molecule/3496939|orf_19-645", "rna_call_id": "5291", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3580456|orf_43-669", "protein_id": "molecule/3580456|orf_43-669", "rna_call_id": "5295", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3619747|orf_49-675", "protein_id": "molecule/3619747|orf_49-675", "rna_call_id": "5297", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3619751|orf_48-674", "protein_id": "molecule/3619751|orf_48-674", "rna_call_id": "6179", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3619768|orf_43-669", "protein_id": "molecule/3619768|orf_43-669", "rna_call_id": "5072", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3664114|orf_42-668", "protein_id": "molecule/3664114|orf_42-668", "rna_call_id": "5074", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3902661|orf_47-673", "protein_id": "molecule/3902661|orf_47-673", "rna_call_id": "4824", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3909094|orf_47-673", "protein_id": "molecule/3909094|orf_47-673", "rna_call_id": "5323", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3991115|orf_47-673", "protein_id": "molecule/3991115|orf_47-673", "rna_call_id": "4626", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4111036|orf_43-669", "protein_id": "molecule/4111036|orf_43-669", "rna_call_id": "4837", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4433251|orf_47-673", "protein_id": "molecule/4433251|orf_47-673", "rna_call_id": "4698", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4473974|orf_42-719", "protein_id": "molecule/4473974|orf_42-719", "rna_call_id": "5082", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4556021|orf_42-668", "protein_id": "molecule/4556021|orf_42-668", "rna_call_id": "4870", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5423741|orf_48-674", "protein_id": "molecule/5423741|orf_48-674", "rna_call_id": "4883", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5497944|orf_48-674", "protein_id": "molecule/5497944|orf_48-674", "rna_call_id": "5426", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5642927|orf_43-669", "protein_id": "molecule/5642927|orf_43-669", "rna_call_id": "5094", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5779419|orf_48-674", "protein_id": "molecule/5779419|orf_48-674", "rna_call_id": "5437", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5812246|orf_46-672", "protein_id": "molecule/5812246|orf_46-672", "rna_call_id": "5882", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6227211|orf_47-673", "protein_id": "molecule/6227211|orf_47-673", "rna_call_id": "5470", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6229052|orf_43-669", "protein_id": "molecule/6229052|orf_43-669", "rna_call_id": "4619", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6242703|orf_47-673", "protein_id": "molecule/6242703|orf_47-673", "rna_call_id": "5474", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6267171|orf_46-672", "protein_id": "molecule/6267171|orf_46-672", "rna_call_id": "5477", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6361521|orf_42-668", "protein_id": "molecule/6361521|orf_42-668", "rna_call_id": "4896", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6368826|orf_43-669", "protein_id": "molecule/6368826|orf_43-669", "rna_call_id": "5496", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6368908|orf_28-654", "protein_id": "molecule/6368908|orf_28-654", "rna_call_id": "5890", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6458552|orf_47-673", "protein_id": "molecule/6458552|orf_47-673", "rna_call_id": "5894", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6506733|orf_35-661", "protein_id": "molecule/6506733|orf_35-661", "rna_call_id": "5504", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6654287|orf_43-669", "protein_id": "molecule/6654287|orf_43-669", "rna_call_id": "6228", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6659006|orf_43-669", "protein_id": "molecule/6659006|orf_43-669", "rna_call_id": "5524", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7026565|orf_9-635", "protein_id": "molecule/7026565|orf_9-635", "rna_call_id": "5537", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7132448|orf_43-669", "protein_id": "molecule/7132448|orf_43-669", "rna_call_id": "4912", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7216973|orf_42-668", "protein_id": "molecule/7216973|orf_42-668", "rna_call_id": "4641", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7620765|orf_43-669", "protein_id": "molecule/7620765|orf_43-669", "rna_call_id": "4929", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7739018|orf_43-669", "protein_id": "molecule/7739018|orf_43-669", "rna_call_id": "4938", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7740558|orf_44-670", "protein_id": "molecule/7740558|orf_44-670", "rna_call_id": "5911", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8093175|orf_43-669", "protein_id": "molecule/8093175|orf_43-669", "rna_call_id": "4729", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8154416|orf_42-668", "protein_id": "molecule/8154416|orf_42-668", "rna_call_id": "5102", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8763893|orf_43-669", "protein_id": "molecule/8763893|orf_43-669", "rna_call_id": "4962", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8763895|orf_48-674", "protein_id": "molecule/8763895|orf_48-674", "rna_call_id": "5620", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8803526|orf_43-669", "protein_id": "molecule/8803526|orf_43-669", "rna_call_id": "5934", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8976671|orf_43-669", "protein_id": "molecule/8976671|orf_43-669", "rna_call_id": "5634", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9254182|orf_43-669", "protein_id": "molecule/9254182|orf_43-669", "rna_call_id": "5955", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9281724|orf_43-669", "protein_id": "molecule/9281724|orf_43-669", "rna_call_id": "5960", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9461903|orf_43-669", "protein_id": "molecule/9461903|orf_43-669", "rna_call_id": "5647", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9535324|orf_43-669", "protein_id": "molecule/9535324|orf_43-669", "rna_call_id": "5649", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9541363|orf_47-673", "protein_id": "molecule/9541363|orf_47-673", "rna_call_id": "4993", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9541370|orf_46-672", "protein_id": "molecule/9541370|orf_46-672", "rna_call_id": "4997", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9541377|orf_46-672", "protein_id": "molecule/9541377|orf_46-672", "rna_call_id": "5655", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9559770|orf_43-669", "protein_id": "molecule/9559770|orf_43-669", "rna_call_id": "5001", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9559773|orf_43-669", "protein_id": "molecule/9559773|orf_43-669", "rna_call_id": "5658", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9665833|orf_45-671", "protein_id": "molecule/9665833|orf_45-671", "rna_call_id": "5967", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9676206|orf_48-674", "protein_id": "molecule/9676206|orf_48-674", "rna_call_id": "5114", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9716734|orf_46-672", "protein_id": "molecule/9716734|orf_46-672", "rna_call_id": "4585", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9761681|orf_42-668", "protein_id": "molecule/9761681|orf_42-668", "rna_call_id": "5014", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9853399|orf_47-673", "protein_id": "molecule/9853399|orf_47-673", "rna_call_id": "5679", "amino_acid_starts": [ 189 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9975242|orf_43-669", "protein_id": "molecule/9975242|orf_43-669", "rna_call_id": "5683", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ILMN", "arm": "spades", "reconstruction_id": "T2-ILMN/spades/NODE_234_length_917_cov_295.735782_g151_i1|orf_96-722", "protein_id": "NODE_234_length_917_cov_295.735782_g151_i1|orf_96-722", "rna_call_id": "987", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/4848|orf_48-674", "protein_id": "4848|orf_48-674", "rna_call_id": "16471", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/4371|orf_47-676", "protein_id": "4371|orf_47-676", "rna_call_id": "7690", "amino_acid_starts": [ 190 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/00e1a7a7-a849-493f-91f3-916756e6767c_0|orf_11-637", "protein_id": "00e1a7a7-a849-493f-91f3-916756e6767c_0|orf_11-637", "rna_call_id": "15670", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670", "protein_id": "054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670", "rna_call_id": "15192", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0658a79d-f8a6-465b-8758-366524843620_0|orf_48-674", "protein_id": "0658a79d-f8a6-465b-8758-366524843620_0|orf_48-674", "rna_call_id": "15567", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/08fe5bcd-b9e0-469e-ba6c-3937bbcda46b_0|orf_44-670", "protein_id": "08fe5bcd-b9e0-469e-ba6c-3937bbcda46b_0|orf_44-670", "rna_call_id": "15751", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-669", "protein_id": "1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-669", "rna_call_id": "15795", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1ef93086-8df7-4a04-a29c-1d6b12aae90a_0|orf_17-691", "protein_id": "1ef93086-8df7-4a04-a29c-1d6b12aae90a_0|orf_17-691", "rna_call_id": "16235", "amino_acid_starts": [ 205 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/20fd2883-b9f7-4282-a480-3cd2739220ad_0|orf_44-670", "protein_id": "20fd2883-b9f7-4282-a480-3cd2739220ad_0|orf_44-670", "rna_call_id": "15390", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/278b380e-3753-4219-a35a-9cae497b3c7f_0|orf_44-670", "protein_id": "278b380e-3753-4219-a35a-9cae497b3c7f_0|orf_44-670", "rna_call_id": "15204", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670", "protein_id": "293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670", "rna_call_id": "15356", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2c53a304-61bc-454e-9b0c-dd9f819dffe5_0|orf_44-670", "protein_id": "2c53a304-61bc-454e-9b0c-dd9f819dffe5_0|orf_44-670", "rna_call_id": "15590", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2efc9e9b-96cc-495e-8dcc-d911cc9d8343_0|orf_43-669", "protein_id": "2efc9e9b-96cc-495e-8dcc-d911cc9d8343_0|orf_43-669", "rna_call_id": "16316", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/34660733-b584-435c-b611-9ddc7849c850_1|orf_43-669", "protein_id": "34660733-b584-435c-b611-9ddc7849c850_1|orf_43-669", "rna_call_id": "15549", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/379c3b22-7ff6-4dd5-9110-7c0a22511929_0|orf_253-669", "protein_id": "379c3b22-7ff6-4dd5-9110-7c0a22511929_0|orf_253-669", "rna_call_id": "15545", "amino_acid_starts": [ 119 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3ad4c0a3-2671-4ecc-ab97-889b5d68e06c_0|orf_43-669", "protein_id": "3ad4c0a3-2671-4ecc-ab97-889b5d68e06c_0|orf_43-669", "rna_call_id": "16291", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3b7cf8a1-03e0-41e1-b4ab-6d7d33d59cc4_0|orf_43-669", "protein_id": "3b7cf8a1-03e0-41e1-b4ab-6d7d33d59cc4_0|orf_43-669", "rna_call_id": "16214", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3de037c0-0452-414d-affa-011587517a1a_0|orf_48-674", "protein_id": "3de037c0-0452-414d-affa-011587517a1a_0|orf_48-674", "rna_call_id": "15524", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3ff9f63e-a2f6-4d75-9e3d-ffcf8183c6e8_0|orf_44-670", "protein_id": "3ff9f63e-a2f6-4d75-9e3d-ffcf8183c6e8_0|orf_44-670", "rna_call_id": "15101", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/415d45cf-6017-4d77-a1e0-f8a1d50c200f_0|orf_44-670", "protein_id": "415d45cf-6017-4d77-a1e0-f8a1d50c200f_0|orf_44-670", "rna_call_id": "16244", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/473959ff-802c-485d-91ab-f76a1d66fe9a_0|orf_44-670", "protein_id": "473959ff-802c-485d-91ab-f76a1d66fe9a_0|orf_44-670", "rna_call_id": "15279", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_49-675", "protein_id": "4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_49-675", "rna_call_id": "16100", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5d2b4724-eba3-45cc-bd3c-b61053dd5aff_0|orf_47-673", "protein_id": "5d2b4724-eba3-45cc-bd3c-b61053dd5aff_0|orf_47-673", "rna_call_id": "15131", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/625a9ca9-6607-42c2-9ba9-2b053f5cd3e5_0|orf_44-670", "protein_id": "625a9ca9-6607-42c2-9ba9-2b053f5cd3e5_0|orf_44-670", "rna_call_id": "16241", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670", "protein_id": "68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670", "rna_call_id": "15304", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670", "protein_id": "68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670", "rna_call_id": "16195", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6a73d850-1113-4f09-84b2-9647a744a5dc_0|orf_44-670", "protein_id": "6a73d850-1113-4f09-84b2-9647a744a5dc_0|orf_44-670", "rna_call_id": "15506", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675", "protein_id": "6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675", "rna_call_id": "15578", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6e3f2a58-07bf-47fc-95d6-e57d174825d5_0|orf_44-670", "protein_id": "6e3f2a58-07bf-47fc-95d6-e57d174825d5_0|orf_44-670", "rna_call_id": "15399", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669", "protein_id": "6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669", "rna_call_id": "16162", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-670", "protein_id": "72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-670", "rna_call_id": "15511", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669", "protein_id": "770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669", "rna_call_id": "16169", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/786ecba7-1163-40c1-9142-8e717527fc28_0|orf_22-696", "protein_id": "786ecba7-1163-40c1-9142-8e717527fc28_0|orf_22-696", "rna_call_id": "15559", "amino_acid_starts": [ 205 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7b85ffa1-c810-45b5-9650-b280e73fa75e_0|orf_49-675", "protein_id": "7b85ffa1-c810-45b5-9650-b280e73fa75e_0|orf_49-675", "rna_call_id": "15393", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670", "protein_id": "833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670", "rna_call_id": "15324", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8653b867-3394-42bc-a8fd-96b7da7bd1ca_0|orf_43-669", "protein_id": "8653b867-3394-42bc-a8fd-96b7da7bd1ca_0|orf_43-669", "rna_call_id": "16211", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670", "protein_id": "87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670", "rna_call_id": "16154", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8f440213-3e7a-40d0-aa54-47b12941a722_0|orf_48-674", "protein_id": "8f440213-3e7a-40d0-aa54-47b12941a722_0|orf_48-674", "rna_call_id": "16189", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-670", "protein_id": "99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-670", "rna_call_id": "16253", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670", "protein_id": "9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670", "rna_call_id": "15327", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9ffcdb49-3aec-4816-a90d-9da82d82c112_0|orf_44-670", "protein_id": "9ffcdb49-3aec-4816-a90d-9da82d82c112_0|orf_44-670", "rna_call_id": "16206", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675", "protein_id": "a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675", "rna_call_id": "16097", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a284d2c8-997b-4db5-bb9b-7750aa918e6c_0|orf_43-669", "protein_id": "a284d2c8-997b-4db5-bb9b-7750aa918e6c_0|orf_43-669", "rna_call_id": "15657", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674", "protein_id": "a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674", "rna_call_id": "15502", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a3014ab1-2fc4-49dc-971b-aaff607eb2fc_0|orf_44-670", "protein_id": "a3014ab1-2fc4-49dc-971b-aaff607eb2fc_0|orf_44-670", "rna_call_id": "16288", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670", "protein_id": "a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670", "rna_call_id": "16143", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-670", "protein_id": "a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-670", "rna_call_id": "15722", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ad0300a7-20a8-4d81-9c7d-2300127d58ef_0|orf_48-674", "protein_id": "ad0300a7-20a8-4d81-9c7d-2300127d58ef_0|orf_48-674", "rna_call_id": "15651", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-670", "protein_id": "b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-670", "rna_call_id": "15153", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-670", "protein_id": "b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-670", "rna_call_id": "15232", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/c21537b1-9480-40ad-b7e7-31b8024c5119_0|orf_43-669", "protein_id": "c21537b1-9480-40ad-b7e7-31b8024c5119_0|orf_43-669", "rna_call_id": "16297", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/c26a52cb-be64-4f94-b766-4123cf3546f2_0|orf_43-669", "protein_id": "c26a52cb-be64-4f94-b766-4123cf3546f2_0|orf_43-669", "rna_call_id": "16402", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/c7d15036-4f25-42ea-adda-d5ba4189b18d_0|orf_43-669", "protein_id": "c7d15036-4f25-42ea-adda-d5ba4189b18d_0|orf_43-669", "rna_call_id": "16259", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670", "protein_id": "ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670", "rna_call_id": "15315", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ceb41408-0f12-4929-8914-0c76724a5fe1_0|orf_44-670", "protein_id": "ceb41408-0f12-4929-8914-0c76724a5fe1_0|orf_44-670", "rna_call_id": "15593", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d6fa3932-decb-41c2-9b9e-c1dff5878895_0|orf_44-670", "protein_id": "d6fa3932-decb-41c2-9b9e-c1dff5878895_0|orf_44-670", "rna_call_id": "16281", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/de9f9123-ff2a-4cd6-a809-b6ddbb48e37e_0|orf_46-672", "protein_id": "de9f9123-ff2a-4cd6-a809-b6ddbb48e37e_0|orf_46-672", "rna_call_id": "15336", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e23b92a1-5e1a-4f6a-882b-2284ec9bb3e3_0|orf_49-675", "protein_id": "e23b92a1-5e1a-4f6a-882b-2284ec9bb3e3_0|orf_49-675", "rna_call_id": "15910", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646", "protein_id": "e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646", "rna_call_id": "15444", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e556685c-989d-4d73-867a-690aab68e19d_0|orf_44-670", "protein_id": "e556685c-989d-4d73-867a-690aab68e19d_0|orf_44-670", "rna_call_id": "16223", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ee340ba0-088d-49e8-b790-fc1423e29b47_0|orf_48-674", "protein_id": "ee340ba0-088d-49e8-b790-fc1423e29b47_0|orf_48-674", "rna_call_id": "15822", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/eed4e4df-213d-4c9f-855d-3f555068da8a_0|orf_44-670", "protein_id": "eed4e4df-213d-4c9f-855d-3f555068da8a_0|orf_44-670", "rna_call_id": "16179", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f1276bdf-f624-4d8b-a9b3-54746b52bae7_0|orf_44-670", "protein_id": "f1276bdf-f624-4d8b-a9b3-54746b52bae7_0|orf_44-670", "rna_call_id": "16082", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f2a7a88b-1745-466f-807d-0ded1a965898_0|orf_44-670", "protein_id": "f2a7a88b-1745-466f-807d-0ded1a965898_0|orf_44-670", "rna_call_id": "15189", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fbc5d884-01b8-4519-a712-2774b2228229_0|orf_44-670", "protein_id": "fbc5d884-01b8-4519-a712-2774b2228229_0|orf_44-670", "rna_call_id": "15756", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671", "protein_id": "fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671", "rna_call_id": "16118", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664", "protein_id": "fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664", "rna_call_id": "15343", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670", "protein_id": "fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670", "rna_call_id": "15707", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "isonform", "reconstruction_id": "T2-ONT/isonform/3_0_222|orf_45-671", "protein_id": "3_0_222|orf_45-671", "rna_call_id": "267", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "isonform", "reconstruction_id": "T2-ONT/isonform/3_0_7|orf_521-1195", "protein_id": "3_0_7|orf_521-1195", "rna_call_id": "260", "amino_acid_starts": [ 205 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670", "protein_id": "054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670", "rna_call_id": "44744", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-666", "protein_id": "1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-666", "rna_call_id": "45883", "amino_acid_starts": [ 188 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670", "protein_id": "293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670", "rna_call_id": "45331", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_48-674", "protein_id": "4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_48-674", "rna_call_id": "46838", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670", "protein_id": "68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670", "rna_call_id": "45415", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670", "protein_id": "68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670", "rna_call_id": "47397", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675", "protein_id": "6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675", "rna_call_id": "45117", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669", "protein_id": "6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669", "rna_call_id": "47246", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-667", "protein_id": "72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-667", "rna_call_id": "45306", "amino_acid_starts": [ 188 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669", "protein_id": "770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669", "rna_call_id": "47909", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7b335514-1380-4257-b451-f61559e03856_0|orf_255-665", "protein_id": "7b335514-1380-4257-b451-f61559e03856_0|orf_255-665", "rna_call_id": "45912", "amino_acid_starts": [ 117 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670", "protein_id": "833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670", "rna_call_id": "45389", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670", "protein_id": "87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670", "rna_call_id": "47155", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-664", "protein_id": "99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-664", "rna_call_id": "47893", "amino_acid_starts": [ 187 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670", "protein_id": "9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670", "rna_call_id": "44840", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675", "protein_id": "a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675", "rna_call_id": "47007", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674", "protein_id": "a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674", "rna_call_id": "45654", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670", "protein_id": "a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670", "rna_call_id": "47324", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-667", "protein_id": "a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-667", "rna_call_id": "45952", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-667", "protein_id": "b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-667", "rna_call_id": "44510", "amino_acid_starts": [ 188 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-664", "protein_id": "b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-664", "rna_call_id": "44582", "amino_acid_starts": [ 187 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670", "protein_id": "ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670", "rna_call_id": "44805", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646", "protein_id": "e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646", "rna_call_id": "45018", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671", "protein_id": "fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671", "rna_call_id": "47506", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664", "protein_id": "fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664", "rna_call_id": "44835", "amino_acid_starts": [ 189 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670", "protein_id": "fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670", "rna_call_id": "45888", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/17dcd23f-1e2a-45a5-85e2-e7a0ca76a5ac_0|orf_44-670", "protein_id": "17dcd23f-1e2a-45a5-85e2-e7a0ca76a5ac_0|orf_44-670", "rna_call_id": "53674", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/4028efaf-b681-4fec-b4be-261db0562201_0|orf_49-675", "protein_id": "4028efaf-b681-4fec-b4be-261db0562201_0|orf_49-675", "rna_call_id": "56013", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/5476238d-8936-4f7c-b883-afe7dc67ca92_0|orf_44-670", "protein_id": "5476238d-8936-4f7c-b883-afe7dc67ca92_0|orf_44-670", "rna_call_id": "55501", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/805ff3a9-0de9-4bed-b83f-69bc1bc780c9_0|orf_44-670", "protein_id": "805ff3a9-0de9-4bed-b83f-69bc1bc780c9_0|orf_44-670", "rna_call_id": "53003", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/9529b7df-3b95-402a-bb7f-e79eda4de2b2_0|orf_16-642", "protein_id": "9529b7df-3b95-402a-bb7f-e79eda4de2b2_0|orf_16-642", "rna_call_id": "55512", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/9d73538e-aa8f-425a-9c4b-f1d03decd394_0|orf_50-676", "protein_id": "9d73538e-aa8f-425a-9c4b-f1d03decd394_0|orf_50-676", "rna_call_id": "56941", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/b099a8db-a8a3-4321-a4c3-275f37df801b_0|orf_44-670", "protein_id": "b099a8db-a8a3-4321-a4c3-275f37df801b_0|orf_44-670", "rna_call_id": "57011", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/d81cc75f-12ce-4528-bb1e-d0a288abffed_0|orf_43-741", "protein_id": "d81cc75f-12ce-4528-bb1e-d0a288abffed_0|orf_43-741", "rna_call_id": "56447", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/ed20e7e9-f81b-47f6-9227-a88481cfdadb_0|orf_49-675", "protein_id": "ed20e7e9-f81b-47f6-9227-a88481cfdadb_0|orf_49-675", "rna_call_id": "53396", "amino_acid_starts": [ 189 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/f29f5411-d9a6-4cf5-9e4b-2a10c907cf19_0|orf_48-674", "protein_id": "f29f5411-d9a6-4cf5-9e4b-2a10c907cf19_0|orf_48-674", "rna_call_id": "54255", "amino_acid_starts": [ 189 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": null, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/844|orf_44-670", "protein_id": "844|orf_44-670", "rna_call_id": "6406", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/3946|orf_55-681", "protein_id": "3946|orf_55-681", "rna_call_id": "17855", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/3948|orf_93-788", "protein_id": "3948|orf_93-788", "rna_call_id": "17866", "variant_amino_acid_start": 220 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669", "protein_id": "0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669", "rna_call_id": "10553", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/07221c19-a06c-4c60-926c-1c99f30decba_0|orf_44-670", "protein_id": "07221c19-a06c-4c60-926c-1c99f30decba_0|orf_44-670", "rna_call_id": "10035", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/087b22fd-a293-4c2b-9715-31a029618a13_0|orf_44-670", "protein_id": "087b22fd-a293-4c2b-9715-31a029618a13_0|orf_44-670", "rna_call_id": "9977", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0902d3e1-f88a-42e8-b12a-0d7411cef3c2_0|orf_47-673", "protein_id": "0902d3e1-f88a-42e8-b12a-0d7411cef3c2_0|orf_47-673", "rna_call_id": "10191", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0e5b2ee2-7047-47fb-9b21-26672a685d22_0|orf_44-670", "protein_id": "0e5b2ee2-7047-47fb-9b21-26672a685d22_0|orf_44-670", "rna_call_id": "11260", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675", "protein_id": "0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675", "rna_call_id": "10350", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/17fde470-2d2f-44b8-81d3-7446ae3f8c5f_0|orf_44-670", "protein_id": "17fde470-2d2f-44b8-81d3-7446ae3f8c5f_0|orf_44-670", "rna_call_id": "10700", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-673", "protein_id": "1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-673", "rna_call_id": "11254", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/260bc0d5-74b8-458d-8a89-23be5d847b3c_0|orf_49-675", "protein_id": "260bc0d5-74b8-458d-8a89-23be5d847b3c_0|orf_49-675", "rna_call_id": "11044", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670", "protein_id": "279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670", "rna_call_id": "10816", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/293bf4c4-e7c0-4136-bff3-a82ab6b4b1ea_0|orf_47-673", "protein_id": "293bf4c4-e7c0-4136-bff3-a82ab6b4b1ea_0|orf_47-673", "rna_call_id": "10137", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673", "protein_id": "2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673", "rna_call_id": "10155", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2d039f4a-6c2c-4b03-b6c1-125a33099818_0|orf_43-669", "protein_id": "2d039f4a-6c2c-4b03-b6c1-125a33099818_0|orf_43-669", "rna_call_id": "10245", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669", "protein_id": "3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669", "rna_call_id": "10849", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3961dbeb-b7fd-4458-ad3c-d798766f9a19_0|orf_49-675", "protein_id": "3961dbeb-b7fd-4458-ad3c-d798766f9a19_0|orf_49-675", "rna_call_id": "10780", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3a8a5143-37d2-408c-a67e-56478c9ff4ae_0|orf_48-674", "protein_id": "3a8a5143-37d2-408c-a67e-56478c9ff4ae_0|orf_48-674", "rna_call_id": "11356", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3b62d6cd-157e-45e9-be59-319f24a539d8_0|orf_43-669", "protein_id": "3b62d6cd-157e-45e9-be59-319f24a539d8_0|orf_43-669", "rna_call_id": "10928", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3d811ec8-6f16-46a1-810d-89b8c12b1d85_0|orf_43-669", "protein_id": "3d811ec8-6f16-46a1-810d-89b8c12b1d85_0|orf_43-669", "rna_call_id": "10862", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670", "protein_id": "3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670", "rna_call_id": "10498", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673", "protein_id": "3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673", "rna_call_id": "11456", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4357959e-9607-4ce6-b605-b99dabd038ec_0|orf_47-673", "protein_id": "4357959e-9607-4ce6-b605-b99dabd038ec_0|orf_47-673", "rna_call_id": "10195", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4825f9b4-eab1-4402-a0cd-500f181c6fe3_0|orf_43-651", "protein_id": "4825f9b4-eab1-4402-a0cd-500f181c6fe3_0|orf_43-651", "rna_call_id": "10690", "variant_amino_acid_start": 191 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4a924a47-aa14-43cf-80a8-9e05c1b973d1_0|orf_47-673", "protein_id": "4a924a47-aa14-43cf-80a8-9e05c1b973d1_0|orf_47-673", "rna_call_id": "10968", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4b31b2a5-29a5-4311-b845-833cf9294358_0|orf_43-669", "protein_id": "4b31b2a5-29a5-4311-b845-833cf9294358_0|orf_43-669", "rna_call_id": "11474", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/4d888581-850f-4cce-8485-0977db44ca29_0|orf_49-675", "protein_id": "4d888581-850f-4cce-8485-0977db44ca29_0|orf_49-675", "rna_call_id": "10784", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/51632d48-b427-4a80-abe3-e02916ccbc69_0|orf_73-699", "protein_id": "51632d48-b427-4a80-abe3-e02916ccbc69_0|orf_73-699", "rna_call_id": "10073", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/52c61f84-0a35-43a5-84d9-4d2ecb8f7d4e_0|orf_49-675", "protein_id": "52c61f84-0a35-43a5-84d9-4d2ecb8f7d4e_0|orf_49-675", "rna_call_id": "11488", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5418683c-affa-4273-bf81-cf027643e81f_0|orf_47-673", "protein_id": "5418683c-affa-4273-bf81-cf027643e81f_0|orf_47-673", "rna_call_id": "10962", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/56780a19-5a31-43c8-b9be-6ebc896c3012_0|orf_43-669", "protein_id": "56780a19-5a31-43c8-b9be-6ebc896c3012_0|orf_43-669", "rna_call_id": "10262", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/59406cd0-1f81-4df2-bb71-2dc45b30e394_0|orf_30-656", "protein_id": "59406cd0-1f81-4df2-bb71-2dc45b30e394_0|orf_30-656", "rna_call_id": "10846", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-673", "protein_id": "597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-673", "rna_call_id": "10739", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5cb71db8-55e7-4dd1-a528-42af3ad19de7_0|orf_44-670", "protein_id": "5cb71db8-55e7-4dd1-a528-42af3ad19de7_0|orf_44-670", "rna_call_id": "10676", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5d84450e-5103-4c7e-81a3-1d859bc3a687_0|orf_48-674", "protein_id": "5d84450e-5103-4c7e-81a3-1d859bc3a687_0|orf_48-674", "rna_call_id": "10855", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6135d740-094c-4a32-ba29-810ce10c83a5_0|orf_44-670", "protein_id": "6135d740-094c-4a32-ba29-810ce10c83a5_0|orf_44-670", "rna_call_id": "10813", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/630bedda-bee2-4954-81e3-547a7a4542a4_0|orf_44-670", "protein_id": "630bedda-bee2-4954-81e3-547a7a4542a4_0|orf_44-670", "rna_call_id": "10841", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/68975354-e52a-42cf-80bc-46588e084cf1_0|orf_448-1140", "protein_id": "68975354-e52a-42cf-80bc-46588e084cf1_0|orf_448-1140", "rna_call_id": "11398", "variant_amino_acid_start": 219 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6a268bf2-2a3e-482f-9616-5956e8a2250f_0|orf_44-670", "protein_id": "6a268bf2-2a3e-482f-9616-5956e8a2250f_0|orf_44-670", "rna_call_id": "10016", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675", "protein_id": "6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675", "rna_call_id": "9986", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_255-671", "protein_id": "6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_255-671", "rna_call_id": "11024", "variant_amino_acid_start": 127 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/73f6044f-38ee-47d0-aa41-daeb02d25632_0|orf_47-673", "protein_id": "73f6044f-38ee-47d0-aa41-daeb02d25632_0|orf_47-673", "rna_call_id": "11048", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/83dff833-2718-4993-afce-b63764344099_0|orf_47-673", "protein_id": "83dff833-2718-4993-afce-b63764344099_0|orf_47-673", "rna_call_id": "10229", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670", "protein_id": "849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670", "rna_call_id": "10671", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670", "protein_id": "87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670", "rna_call_id": "11201", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/89c3cfdc-9577-425b-9635-0aadfd160dd9_0|orf_48-674", "protein_id": "89c3cfdc-9577-425b-9635-0aadfd160dd9_0|orf_48-674", "rna_call_id": "10579", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/89f2e4b1-73e0-4766-8ebe-25b613377c13_0|orf_43-669", "protein_id": "89f2e4b1-73e0-4766-8ebe-25b613377c13_0|orf_43-669", "rna_call_id": "10993", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-675", "protein_id": "8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-675", "rna_call_id": "10733", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/90dfb37b-dd9c-4782-8161-62f94cdf33e7_0|orf_44-670", "protein_id": "90dfb37b-dd9c-4782-8161-62f94cdf33e7_0|orf_44-670", "rna_call_id": "11265", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/953ad68e-6f5a-432f-a101-d8b55521c923_0|orf_36-662", "protein_id": "953ad68e-6f5a-432f-a101-d8b55521c923_0|orf_36-662", "rna_call_id": "10019", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/95508ff9-b9a0-4078-8c23-c061ab4a77b6_0|orf_20-697", "protein_id": "95508ff9-b9a0-4078-8c23-c061ab4a77b6_0|orf_20-697", "rna_call_id": "10612", "variant_amino_acid_start": 214 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/95c406c1-5b10-4790-8088-4e5180dccdcb_0|orf_47-673", "protein_id": "95c406c1-5b10-4790-8088-4e5180dccdcb_0|orf_47-673", "rna_call_id": "10182", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/996b7767-bcba-4be7-9ee1-b99a8abf9719_0|orf_49-675", "protein_id": "996b7767-bcba-4be7-9ee1-b99a8abf9719_0|orf_49-675", "rna_call_id": "10022", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_49-675", "protein_id": "99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_49-675", "rna_call_id": "10821", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669", "protein_id": "9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669", "rna_call_id": "10629", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9ecf34d8-c6e5-4322-ad0e-e113fdf29b3f_0|orf_44-670", "protein_id": "9ecf34d8-c6e5-4322-ad0e-e113fdf29b3f_0|orf_44-670", "rna_call_id": "11011", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669", "protein_id": "a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669", "rna_call_id": "10697", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a6de019a-9d88-4bec-837d-4fee7007615b_0|orf_44-670", "protein_id": "a6de019a-9d88-4bec-837d-4fee7007615b_0|orf_44-670", "rna_call_id": "11192", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-674", "protein_id": "a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-674", "rna_call_id": "10094", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a783655f-207e-48b4-849e-e4bb57720778_0|orf_43-669", "protein_id": "a783655f-207e-48b4-849e-e4bb57720778_0|orf_43-669", "rna_call_id": "11493", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a95e9948-a37b-478a-a432-b49d9ff178e7_0|orf_44-670", "protein_id": "a95e9948-a37b-478a-a432-b49d9ff178e7_0|orf_44-670", "rna_call_id": "10827", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673", "protein_id": "ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673", "rna_call_id": "9982", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670", "protein_id": "acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670", "rna_call_id": "10131", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/aee1d64e-0663-4d0b-b21a-ded58f3d1f29_0|orf_48-674", "protein_id": "aee1d64e-0663-4d0b-b21a-ded58f3d1f29_0|orf_48-674", "rna_call_id": "10641", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/af46850a-2e2f-471b-adc9-a40cd8777f1c_0|orf_43-669", "protein_id": "af46850a-2e2f-471b-adc9-a40cd8777f1c_0|orf_43-669", "rna_call_id": "10186", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674", "protein_id": "af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674", "rna_call_id": "10202", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670", "protein_id": "b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670", "rna_call_id": "10128", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673", "protein_id": "b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673", "rna_call_id": "10172", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b461cead-1b21-45f0-9ae5-4a83da8ca9e8_0|orf_44-670", "protein_id": "b461cead-1b21-45f0-9ae5-4a83da8ca9e8_0|orf_44-670", "rna_call_id": "10242", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b6836833-252e-45cf-90be-b7f220ed8d50_0|orf_44-670", "protein_id": "b6836833-252e-45cf-90be-b7f220ed8d50_0|orf_44-670", "rna_call_id": "10069", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673", "protein_id": "b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673", "rna_call_id": "11303", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b876b8a7-5fc0-4a14-8c45-e91de2d213fb_0|orf_44-670", "protein_id": "b876b8a7-5fc0-4a14-8c45-e91de2d213fb_0|orf_44-670", "rna_call_id": "10208", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b93b3cfb-9c03-4af3-90bd-5c43faafb586_0|orf_44-670", "protein_id": "b93b3cfb-9c03-4af3-90bd-5c43faafb586_0|orf_44-670", "rna_call_id": "10443", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651", "protein_id": "bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651", "rna_call_id": "11244", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_44-670", "protein_id": "bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_44-670", "rna_call_id": "10777", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662", "protein_id": "bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662", "rna_call_id": "10859", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c264799c-cddf-49ee-b108-cda27354123e_0|orf_44-670", "protein_id": "c264799c-cddf-49ee-b108-cda27354123e_0|orf_44-670", "rna_call_id": "10592", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_50-676", "protein_id": "c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_50-676", "rna_call_id": "11387", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670", "protein_id": "c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670", "rna_call_id": "10179", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-670", "protein_id": "c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-670", "rna_call_id": "10694", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633", "protein_id": "ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633", "rna_call_id": "10938", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-670", "protein_id": "cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-670", "rna_call_id": "10495", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cbafe623-503b-46ec-a57e-79df5e4297bb_0|orf_49-675", "protein_id": "cbafe623-503b-46ec-a57e-79df5e4297bb_0|orf_49-675", "rna_call_id": "10913", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cc9eb3ce-d494-4233-9708-7112dde283e9_0|orf_46-672", "protein_id": "cc9eb3ce-d494-4233-9708-7112dde283e9_0|orf_46-672", "rna_call_id": "10996", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670", "protein_id": "cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670", "rna_call_id": "11158", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670", "protein_id": "d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670", "rna_call_id": "10117", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669", "protein_id": "d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669", "rna_call_id": "10668", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d7b09f07-90a0-4c7f-b83c-5990feee6ac7_1|orf_48-674", "protein_id": "d7b09f07-90a0-4c7f-b83c-5990feee6ac7_1|orf_48-674", "rna_call_id": "10233", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670", "protein_id": "d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670", "rna_call_id": "9957", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/da578df2-44a8-40c9-aedc-25a3eb7fefb3_0|orf_44-670", "protein_id": "da578df2-44a8-40c9-aedc-25a3eb7fefb3_0|orf_44-670", "rna_call_id": "10632", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/db018663-ed5f-4abb-81ac-4c9c5192228f_0|orf_44-670", "protein_id": "db018663-ed5f-4abb-81ac-4c9c5192228f_0|orf_44-670", "rna_call_id": "10922", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dbabc853-5a86-423c-9f50-30b1cd95b7ee_0|orf_44-670", "protein_id": "dbabc853-5a86-423c-9f50-30b1cd95b7ee_0|orf_44-670", "rna_call_id": "10878", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e0fc0075-f849-4ff3-9e61-97fbf7390aeb_0|orf_47-673", "protein_id": "e0fc0075-f849-4ff3-9e61-97fbf7390aeb_0|orf_47-673", "rna_call_id": "11394", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670", "protein_id": "e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670", "rna_call_id": "11300", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669", "protein_id": "e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669", "rna_call_id": "10088", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670", "protein_id": "e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670", "rna_call_id": "10651", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e9281592-9005-4993-955b-3ce53224ec5a_0|orf_49-675", "protein_id": "e9281592-9005-4993-955b-3ce53224ec5a_0|orf_49-675", "rna_call_id": "10518", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ecb4f698-0298-4069-8813-2f64c22ceecd_0|orf_44-670", "protein_id": "ecb4f698-0298-4069-8813-2f64c22ceecd_0|orf_44-670", "rna_call_id": "11030", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-670", "protein_id": "ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-670", "rna_call_id": "11222", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670", "protein_id": "f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670", "rna_call_id": "10105", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f40b9f75-c699-4785-a396-a2c7e1faa904_0|orf_44-670", "protein_id": "f40b9f75-c699-4785-a396-a2c7e1faa904_0|orf_44-670", "rna_call_id": "10726", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673", "protein_id": "f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673", "rna_call_id": "10720", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674", "protein_id": "f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674", "rna_call_id": "11231", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fa660ceb-1d1b-407b-91d5-dfae44515c0d_0|orf_25-651", "protein_id": "fa660ceb-1d1b-407b-91d5-dfae44515c0d_0|orf_25-651", "rna_call_id": "10032", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fbb9b78b-80ce-4e93-b6c4-d5f617e28ab4_0|orf_255-665", "protein_id": "fbb9b78b-80ce-4e93-b6c4-d5f617e28ab4_0|orf_255-665", "rna_call_id": "10683", "variant_amino_acid_start": 125 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fdb4c4d3-0978-4aba-b315-4cf6e0d555fc_0|orf_44-670", "protein_id": "fdb4c4d3-0978-4aba-b315-4cf6e0d555fc_0|orf_44-670", "rna_call_id": "10041", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-673", "protein_id": "ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-673", "rna_call_id": "10752", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "isonform", "reconstruction_id": "T1-ONT/isonform/3_0_19|orf_15-695", "protein_id": "3_0_19|orf_15-695", "rna_call_id": "226", "variant_amino_acid_start": 215 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669", "protein_id": "0586532b-432b-4f1e-b2cf-67dd6530f7f3_0|orf_43-669", "rna_call_id": "37114", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675", "protein_id": "0f8e29b9-e732-41bd-9a2e-81059b2dd295_0|orf_49-675", "rna_call_id": "35192", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-676", "protein_id": "1c25b8e5-865b-41e0-901a-216ee503e3d7_0|orf_47-676", "rna_call_id": "37597", "variant_amino_acid_start": 198 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670", "protein_id": "279e6f69-fef5-4162-996a-f1b100c12af5_0|orf_44-670", "rna_call_id": "36342", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673", "protein_id": "2b76d2aa-fa89-4474-ab55-02742e331ccb_0|orf_47-673", "rna_call_id": "34653", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669", "protein_id": "3627e9b6-4976-46df-b08b-6725125a3d88_0|orf_43-669", "rna_call_id": "34870", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670", "protein_id": "3efdc2f9-bf9f-46b8-a70a-5fc90c702ab1_0|orf_44-670", "rna_call_id": "35036", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673", "protein_id": "3fb07658-cdcf-4083-8092-13883a22c96f_0|orf_47-673", "rna_call_id": "38093", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-670", "protein_id": "597a4227-ca72-4f26-8480-3dee667560c0_0|orf_47-670", "rna_call_id": "36485", "variant_amino_acid_start": 196 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675", "protein_id": "6ed64b09-d0c8-40b6-b5dc-87f4b1210c00_0|orf_49-675", "rna_call_id": "33939", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_388-669", "protein_id": "6fc02db4-aa4a-49ba-a079-861945ba51a8_0|orf_388-669", "rna_call_id": "35664", "variant_amino_acid_start": 82 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670", "protein_id": "849afddf-7ac6-465b-b9f1-a6087e91437a_0|orf_44-670", "rna_call_id": "36860", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670", "protein_id": "87769555-ca3e-440b-b1ce-db7584609963_0|orf_44-670", "rna_call_id": "37329", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-678", "protein_id": "8b9ccd79-46bd-4ece-b4cb-ca1e6cf920d2_0|orf_49-678", "rna_call_id": "36401", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_48-665", "protein_id": "99fa7039-ded0-4da9-9da2-8333cb828c24_0|orf_48-665", "rna_call_id": "36141", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669", "protein_id": "9eaebb0d-a848-4b78-80d2-3387a72e46f3_0|orf_43-669", "rna_call_id": "35541", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669", "protein_id": "a6bf59fa-96af-4e99-9b25-2db1bc99ade3_0|orf_43-669", "rna_call_id": "36193", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-671", "protein_id": "a75cd995-0ec4-4b79-bde7-f00cfd233a06_0|orf_48-671", "rna_call_id": "34354", "variant_amino_acid_start": 196 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673", "protein_id": "ab18f26d-3e95-4424-8a6a-372427125a03_0|orf_47-673", "rna_call_id": "33915", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670", "protein_id": "acea1454-be69-4248-b9ab-1a4abfb6e225_0|orf_44-670", "rna_call_id": "34694", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674", "protein_id": "af6ba2a8-6096-4b2a-81dc-95529f57fa82_0|orf_48-674", "rna_call_id": "34643", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670", "protein_id": "b15748ba-9774-4211-85af-687ac18e9b70_0|orf_44-670", "rna_call_id": "34331", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673", "protein_id": "b416fa11-9a33-4e68-81e3-0530f63c0935_0|orf_47-673", "rna_call_id": "34430", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673", "protein_id": "b6921a93-7de0-4b84-9d43-a8359941b4b7_0|orf_47-673", "rna_call_id": "37675", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651", "protein_id": "bc6829bc-5ab4-4df8-9464-586a9646846e_0|orf_25-651", "rna_call_id": "37553", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_255-668", "protein_id": "bd5d7e73-728d-4bc5-8eff-e79fa1e71a4d_0|orf_255-668", "rna_call_id": "37180", "variant_amino_acid_start": 126 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662", "protein_id": "bd976ea9-c42f-4e9d-b8af-a4fc7a2c985f_0|orf_36-662", "rna_call_id": "36299", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_261-677", "protein_id": "c47b5837-3dcf-43d9-863c-91f54d9e5e56_0|orf_261-677", "rna_call_id": "37904", "variant_amino_acid_start": 127 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670", "protein_id": "c528f060-d8b0-4c8a-b1d6-e2ef4980f652_0|orf_44-670", "rna_call_id": "34725", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-667", "protein_id": "c866a199-e099-4d53-86f2-88783106b0e8_0|orf_44-667", "rna_call_id": "37066", "variant_amino_acid_start": 196 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633", "protein_id": "ca3ba512-ec9d-447c-8153-cbb88a358003_0|orf_7-633", "rna_call_id": "36806", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-664", "protein_id": "cb7c0a6e-8cc1-4d64-a32b-bb81a1c27426_0|orf_44-664", "rna_call_id": "36198", "variant_amino_acid_start": 195 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670", "protein_id": "cdf67dc8-4d94-4a77-8f9f-0d6242741536_0|orf_44-670", "rna_call_id": "37239", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670", "protein_id": "d2cdfbec-e359-4567-ba63-d8c3fef91a8c_0|orf_44-670", "rna_call_id": "34088", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669", "protein_id": "d38d01a2-7578-4db4-af65-11c5ddd7c46c_0|orf_43-669", "rna_call_id": "36014", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670", "protein_id": "d922fc14-74bf-4879-9750-82bb2c8d523f_0|orf_44-670", "rna_call_id": "33773", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670", "protein_id": "e606e73c-4b64-40d2-931a-1d5b85e0e590_0|orf_44-670", "rna_call_id": "37628", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669", "protein_id": "e79fe873-80b6-4077-9c00-8a3d2eed5dea_0|orf_43-669", "rna_call_id": "34531", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670", "protein_id": "e847f660-ed1f-4d03-bac8-6eaacefafb40_0|orf_44-670", "rna_call_id": "36287", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-667", "protein_id": "ed561fd7-4648-45e1-9f0b-e092f34dd513_0|orf_44-667", "rna_call_id": "37311", "variant_amino_acid_start": 196 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670", "protein_id": "f37bb4da-5810-49d3-8b23-7b87e9388f11_0|orf_44-670", "rna_call_id": "34373", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673", "protein_id": "f980e3b9-9960-4ada-8e02-7d786a47bee9_0|orf_47-673", "rna_call_id": "35150", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674", "protein_id": "f9e9de44-c464-4119-970e-befb5712a932_0|orf_48-674", "rna_call_id": "37588", "variant_amino_acid_start": 197 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-670", "protein_id": "ff2d29f9-fbdb-426b-b70c-29c9ef76dc1b_0|orf_47-670", "rna_call_id": "37012", "variant_amino_acid_start": 196 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10064376|orf_48-674", "protein_id": "molecule/10064376|orf_48-674", "rna_call_id": "2965", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10178021|orf_46-672", "protein_id": "molecule/10178021|orf_46-672", "rna_call_id": "2988", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10189342|orf_43-669", "protein_id": "molecule/10189342|orf_43-669", "rna_call_id": "3634", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1019294|orf_43-669", "protein_id": "molecule/1019294|orf_43-669", "rna_call_id": "2773", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1019374|orf_42-668", "protein_id": "molecule/1019374|orf_42-668", "rna_call_id": "3612", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1025464|orf_43-669", "protein_id": "molecule/1025464|orf_43-669", "rna_call_id": "3760", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10343427|orf_43-669", "protein_id": "molecule/10343427|orf_43-669", "rna_call_id": "3438", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10554216|orf_29-655", "protein_id": "molecule/10554216|orf_29-655", "rna_call_id": "2753", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10602017|orf_47-673", "protein_id": "molecule/10602017|orf_47-673", "rna_call_id": "2980", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1060653|orf_43-669", "protein_id": "molecule/1060653|orf_43-669", "rna_call_id": "3010", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10717497|orf_49-675", "protein_id": "molecule/10717497|orf_49-675", "rna_call_id": "3355", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10795793|orf_48-674", "protein_id": "molecule/10795793|orf_48-674", "rna_call_id": "3364", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1080066|orf_48-674", "protein_id": "molecule/1080066|orf_48-674", "rna_call_id": "3074", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10937825|orf_43-669", "protein_id": "molecule/10937825|orf_43-669", "rna_call_id": "3610", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10965437|orf_25-651", "protein_id": "molecule/10965437|orf_25-651", "rna_call_id": "3036", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1113042|orf_43-669", "protein_id": "molecule/1113042|orf_43-669", "rna_call_id": "2994", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1113063|orf_43-669", "protein_id": "molecule/1113063|orf_43-669", "rna_call_id": "3753", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1113255|orf_10-636", "protein_id": "molecule/1113255|orf_10-636", "rna_call_id": "2838", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/115464|orf_47-673", "protein_id": "molecule/115464|orf_47-673", "rna_call_id": "2991", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1161327|orf_43-669", "protein_id": "molecule/1161327|orf_43-669", "rna_call_id": "3415", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/120934|orf_46-672", "protein_id": "molecule/120934|orf_46-672", "rna_call_id": "3077", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1214434|orf_48-674", "protein_id": "molecule/1214434|orf_48-674", "rna_call_id": "3722", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1268463|orf_46-672", "protein_id": "molecule/1268463|orf_46-672", "rna_call_id": "2830", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1319565|orf_43-669", "protein_id": "molecule/1319565|orf_43-669", "rna_call_id": "3755", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1413780|orf_19-645", "protein_id": "molecule/1413780|orf_19-645", "rna_call_id": "3472", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1538081|orf_43-669", "protein_id": "molecule/1538081|orf_43-669", "rna_call_id": "3417", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/174187|orf_46-672", "protein_id": "molecule/174187|orf_46-672", "rna_call_id": "3383", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/174199|orf_43-669", "protein_id": "molecule/174199|orf_43-669", "rna_call_id": "3747", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1801550|orf_45-671", "protein_id": "molecule/1801550|orf_45-671", "rna_call_id": "3729", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1801561|orf_43-669", "protein_id": "molecule/1801561|orf_43-669", "rna_call_id": "3440", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1882867|orf_43-669", "protein_id": "molecule/1882867|orf_43-669", "rna_call_id": "3628", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1896631|orf_46-672", "protein_id": "molecule/1896631|orf_46-672", "rna_call_id": "3738", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2243892|orf_48-674", "protein_id": "molecule/2243892|orf_48-674", "rna_call_id": "3345", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2274290|orf_43-669", "protein_id": "molecule/2274290|orf_43-669", "rna_call_id": "3630", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2277834|orf_45-671", "protein_id": "molecule/2277834|orf_45-671", "rna_call_id": "3614", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2302647|orf_46-672", "protein_id": "molecule/2302647|orf_46-672", "rna_call_id": "2997", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2369244|orf_43-669", "protein_id": "molecule/2369244|orf_43-669", "rna_call_id": "3757", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2502925|orf_45-671", "protein_id": "molecule/2502925|orf_45-671", "rna_call_id": "3603", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2579186|orf_43-669", "protein_id": "molecule/2579186|orf_43-669", "rna_call_id": "3632", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2600411|orf_11-685", "protein_id": "molecule/2600411|orf_11-685", "rna_call_id": "3683", "variant_amino_acid_start": 213 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2629266|orf_46-672", "protein_id": "molecule/2629266|orf_46-672", "rna_call_id": "2821", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2629282|orf_47-673", "protein_id": "molecule/2629282|orf_47-673", "rna_call_id": "3732", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2629287|orf_47-673", "protein_id": "molecule/2629287|orf_47-673", "rna_call_id": "3744", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/271837|orf_42-668", "protein_id": "molecule/271837|orf_42-668", "rna_call_id": "3008", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2817741|orf_44-670", "protein_id": "molecule/2817741|orf_44-670", "rna_call_id": "3783", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/2904375|orf_43-669", "protein_id": "molecule/2904375|orf_43-669", "rna_call_id": "3448", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3005554|orf_43-669", "protein_id": "molecule/3005554|orf_43-669", "rna_call_id": "3419", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3031815|orf_46-672", "protein_id": "molecule/3031815|orf_46-672", "rna_call_id": "3741", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3085879|orf_43-669", "protein_id": "molecule/3085879|orf_43-669", "rna_call_id": "3617", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3158192|orf_43-669", "protein_id": "molecule/3158192|orf_43-669", "rna_call_id": "3421", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3199407|orf_43-669", "protein_id": "molecule/3199407|orf_43-669", "rna_call_id": "3762", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3246875|orf_48-674", "protein_id": "molecule/3246875|orf_48-674", "rna_call_id": "3719", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3493006|orf_28-654", "protein_id": "molecule/3493006|orf_28-654", "rna_call_id": "3033", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3496939|orf_19-645", "protein_id": "molecule/3496939|orf_19-645", "rna_call_id": "3470", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3517396|orf_48-674", "protein_id": "molecule/3517396|orf_48-674", "rna_call_id": "3735", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3580456|orf_43-669", "protein_id": "molecule/3580456|orf_43-669", "rna_call_id": "3423", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3619747|orf_49-675", "protein_id": "molecule/3619747|orf_49-675", "rna_call_id": "3348", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3619751|orf_48-674", "protein_id": "molecule/3619751|orf_48-674", "rna_call_id": "3725", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3619768|orf_43-669", "protein_id": "molecule/3619768|orf_43-669", "rna_call_id": "3084", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3650643|orf_42-668", "protein_id": "molecule/3650643|orf_42-668", "rna_call_id": "3454", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3664114|orf_42-668", "protein_id": "molecule/3664114|orf_42-668", "rna_call_id": "3090", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3748101|orf_42-668", "protein_id": "molecule/3748101|orf_42-668", "rna_call_id": "3029", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3784489|orf_44-670", "protein_id": "molecule/3784489|orf_44-670", "rna_call_id": "3405", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3902661|orf_47-673", "protein_id": "molecule/3902661|orf_47-673", "rna_call_id": "2974", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3907167|orf_47-673", "protein_id": "molecule/3907167|orf_47-673", "rna_call_id": "3587", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3909094|orf_47-673", "protein_id": "molecule/3909094|orf_47-673", "rna_call_id": "3367", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3991115|orf_47-673", "protein_id": "molecule/3991115|orf_47-673", "rna_call_id": "2767", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4068210|orf_42-668", "protein_id": "molecule/4068210|orf_42-668", "rna_call_id": "3764", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4111036|orf_43-669", "protein_id": "molecule/4111036|orf_43-669", "rna_call_id": "3012", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/412686|orf_48-674", "protein_id": "molecule/412686|orf_48-674", "rna_call_id": "3080", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4221078|orf_43-669", "protein_id": "molecule/4221078|orf_43-669", "rna_call_id": "3623", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4244472|orf_43-669", "protein_id": "molecule/4244472|orf_43-669", "rna_call_id": "3000", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4295386|orf_30-656", "protein_id": "molecule/4295386|orf_30-656", "rna_call_id": "3038", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4433251|orf_47-673", "protein_id": "molecule/4433251|orf_47-673", "rna_call_id": "2827", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4463788|orf_43-669", "protein_id": "molecule/4463788|orf_43-669", "rna_call_id": "3023", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4473974|orf_42-668", "protein_id": "molecule/4473974|orf_42-668", "rna_call_id": "3086", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4556021|orf_42-668", "protein_id": "molecule/4556021|orf_42-668", "rna_call_id": "3025", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4712523|orf_46-672", "protein_id": "molecule/4712523|orf_46-672", "rna_call_id": "3426", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5167467|orf_47-661", "protein_id": "molecule/5167467|orf_47-661", "rna_call_id": "3773", "variant_amino_acid_start": 193 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5236959|orf_43-669", "protein_id": "molecule/5236959|orf_43-669", "rna_call_id": "3450", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5303072|orf_48-674", "protein_id": "molecule/5303072|orf_48-674", "rna_call_id": "3578", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5423741|orf_48-674", "protein_id": "molecule/5423741|orf_48-674", "rna_call_id": "2968", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5497944|orf_48-674", "protein_id": "molecule/5497944|orf_48-674", "rna_call_id": "3361", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/557027|orf_49-675", "protein_id": "molecule/557027|orf_49-675", "rna_call_id": "3342", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5642927|orf_43-669", "protein_id": "molecule/5642927|orf_43-669", "rna_call_id": "3088", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5696462|orf_42-668", "protein_id": "molecule/5696462|orf_42-668", "rna_call_id": "3429", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/575063|orf_47-673", "protein_id": "molecule/575063|orf_47-673", "rna_call_id": "3358", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/575078|orf_43-669", "protein_id": "molecule/575078|orf_43-669", "rna_call_id": "3403", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5779419|orf_48-674", "protein_id": "molecule/5779419|orf_48-674", "rna_call_id": "3352", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5801272|orf_43-669", "protein_id": "molecule/5801272|orf_43-669", "rna_call_id": "3606", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5812246|orf_46-672", "protein_id": "molecule/5812246|orf_46-672", "rna_call_id": "3591", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5839747|orf_42-668", "protein_id": "molecule/5839747|orf_42-668", "rna_call_id": "3409", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6205103|orf_47-673", "protein_id": "molecule/6205103|orf_47-673", "rna_call_id": "2833", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6227211|orf_47-673", "protein_id": "molecule/6227211|orf_47-673", "rna_call_id": "3370", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6229052|orf_43-669", "protein_id": "molecule/6229052|orf_43-669", "rna_call_id": "2757", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6242703|orf_47-673", "protein_id": "molecule/6242703|orf_47-673", "rna_call_id": "3373", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6267171|orf_46-672", "protein_id": "molecule/6267171|orf_46-672", "rna_call_id": "3387", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6361521|orf_42-668", "protein_id": "molecule/6361521|orf_42-668", "rna_call_id": "3014", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6368826|orf_43-669", "protein_id": "molecule/6368826|orf_43-669", "rna_call_id": "3411", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6368908|orf_28-654", "protein_id": "molecule/6368908|orf_28-654", "rna_call_id": "3641", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6458552|orf_47-673", "protein_id": "molecule/6458552|orf_47-673", "rna_call_id": "3581", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6506733|orf_35-661", "protein_id": "molecule/6506733|orf_35-661", "rna_call_id": "3461", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6592287|orf_42-668", "protein_id": "molecule/6592287|orf_42-668", "rna_call_id": "3396", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6654287|orf_43-669", "protein_id": "molecule/6654287|orf_43-669", "rna_call_id": "3780", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6654941|orf_43-669", "protein_id": "molecule/6654941|orf_43-669", "rna_call_id": "3442", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6659006|orf_43-669", "protein_id": "molecule/6659006|orf_43-669", "rna_call_id": "3398", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6707164|orf_43-669", "protein_id": "molecule/6707164|orf_43-669", "rna_call_id": "3027", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6707170|orf_43-669", "protein_id": "molecule/6707170|orf_43-669", "rna_call_id": "3444", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6990504|orf_42-668", "protein_id": "molecule/6990504|orf_42-668", "rna_call_id": "3031", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7026565|orf_9-635", "protein_id": "molecule/7026565|orf_9-635", "rna_call_id": "3474", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7132448|orf_43-669", "protein_id": "molecule/7132448|orf_43-669", "rna_call_id": "3016", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7216973|orf_42-668", "protein_id": "molecule/7216973|orf_42-668", "rna_call_id": "2775", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7273585|orf_46-675", "protein_id": "molecule/7273585|orf_46-675", "rna_call_id": "3456", "variant_amino_acid_start": 198 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7279353|orf_46-672", "protein_id": "molecule/7279353|orf_46-672", "rna_call_id": "2977", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7541603|orf_43-669", "protein_id": "molecule/7541603|orf_43-669", "rna_call_id": "3452", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/754378|orf_47-673", "protein_id": "molecule/754378|orf_47-673", "rna_call_id": "2824", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7620765|orf_43-669", "protein_id": "molecule/7620765|orf_43-669", "rna_call_id": "3004", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7739018|orf_43-669", "protein_id": "molecule/7739018|orf_43-669", "rna_call_id": "3006", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7740558|orf_44-670", "protein_id": "molecule/7740558|orf_44-670", "rna_call_id": "3608", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7752404|orf_46-672", "protein_id": "molecule/7752404|orf_46-672", "rna_call_id": "3584", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/780783|orf_46-672", "protein_id": "molecule/780783|orf_46-672", "rna_call_id": "3749", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7967093|orf_43-669", "protein_id": "molecule/7967093|orf_43-669", "rna_call_id": "3636", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8063840|orf_45-671", "protein_id": "molecule/8063840|orf_45-671", "rna_call_id": "2770", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8063908|orf_43-669", "protein_id": "molecule/8063908|orf_43-669", "rna_call_id": "3446", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8093175|orf_43-669", "protein_id": "molecule/8093175|orf_43-669", "rna_call_id": "2836", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8154416|orf_42-668", "protein_id": "molecule/8154416|orf_42-668", "rna_call_id": "3092", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8763893|orf_43-669", "protein_id": "molecule/8763893|orf_43-669", "rna_call_id": "2983", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8763895|orf_48-674", "protein_id": "molecule/8763895|orf_48-674", "rna_call_id": "3377", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8803526|orf_43-669", "protein_id": "molecule/8803526|orf_43-669", "rna_call_id": "3599", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8904710|orf_42-668", "protein_id": "molecule/8904710|orf_42-668", "rna_call_id": "3638", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8976671|orf_43-669", "protein_id": "molecule/8976671|orf_43-669", "rna_call_id": "3432", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9254182|orf_43-669", "protein_id": "molecule/9254182|orf_43-669", "rna_call_id": "3625", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9281724|orf_43-669", "protein_id": "molecule/9281724|orf_43-669", "rna_call_id": "3601", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9344838|orf_47-673", "protein_id": "molecule/9344838|orf_47-673", "rna_call_id": "3390", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9461903|orf_43-669", "protein_id": "molecule/9461903|orf_43-669", "rna_call_id": "3434", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9535324|orf_43-669", "protein_id": "molecule/9535324|orf_43-669", "rna_call_id": "3436", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9541363|orf_47-673", "protein_id": "molecule/9541363|orf_47-673", "rna_call_id": "2971", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9541370|orf_46-672", "protein_id": "molecule/9541370|orf_46-672", "rna_call_id": "2985", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9541377|orf_46-672", "protein_id": "molecule/9541377|orf_46-672", "rna_call_id": "3393", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9559770|orf_43-669", "protein_id": "molecule/9559770|orf_43-669", "rna_call_id": "3018", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9559773|orf_43-669", "protein_id": "molecule/9559773|orf_43-669", "rna_call_id": "3413", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9665833|orf_45-671", "protein_id": "molecule/9665833|orf_45-671", "rna_call_id": "3594", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9676206|orf_48-674", "protein_id": "molecule/9676206|orf_48-674", "rna_call_id": "3071", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9716734|orf_46-672", "protein_id": "molecule/9716734|orf_46-672", "rna_call_id": "2732", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9761681|orf_42-668", "protein_id": "molecule/9761681|orf_42-668", "rna_call_id": "3021", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9853399|orf_47-673", "protein_id": "molecule/9853399|orf_47-673", "rna_call_id": "3380", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9975242|orf_43-669", "protein_id": "molecule/9975242|orf_43-669", "rna_call_id": "3401", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "isonform", "reconstruction_id": "T1-PacBio/isonform/0_0_2|orf_11-685", "protein_id": "0_0_2|orf_11-685", "rna_call_id": "125", "variant_amino_acid_start": 213 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10178021|orf_46-672", "protein_id": "molecule/10178021|orf_46-672", "rna_call_id": "5026", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1025464|orf_43-669", "protein_id": "molecule/1025464|orf_43-669", "rna_call_id": "6049", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10343427|orf_43-669", "protein_id": "molecule/10343427|orf_43-669", "rna_call_id": "5720", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10602017|orf_47-673", "protein_id": "molecule/10602017|orf_47-673", "rna_call_id": "5031", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1060653|orf_43-669", "protein_id": "molecule/1060653|orf_43-669", "rna_call_id": "4756", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10717497|orf_49-675", "protein_id": "molecule/10717497|orf_49-675", "rna_call_id": "5731", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10795793|orf_48-674", "protein_id": "molecule/10795793|orf_48-674", "rna_call_id": "5737", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1080066|orf_48-674", "protein_id": "molecule/1080066|orf_48-674", "rna_call_id": "5055", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10937825|orf_43-669", "protein_id": "molecule/10937825|orf_43-669", "rna_call_id": "5989", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1113063|orf_43-669", "protein_id": "molecule/1113063|orf_43-669", "rna_call_id": "6053", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1161327|orf_43-669", "protein_id": "molecule/1161327|orf_43-669", "rna_call_id": "5191", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/120934|orf_46-672", "protein_id": "molecule/120934|orf_46-672", "rna_call_id": "5042", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1214434|orf_48-674", "protein_id": "molecule/1214434|orf_48-674", "rna_call_id": "6075", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1268463|orf_46-672", "protein_id": "molecule/1268463|orf_46-672", "rna_call_id": "4677", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1319565|orf_43-669", "protein_id": "molecule/1319565|orf_43-669", "rna_call_id": "6079", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1538081|orf_43-669", "protein_id": "molecule/1538081|orf_43-669", "rna_call_id": "5218", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/174187|orf_46-672", "protein_id": "molecule/174187|orf_46-672", "rna_call_id": "5131", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1882867|orf_43-669", "protein_id": "molecule/1882867|orf_43-669", "rna_call_id": "5779", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/1896631|orf_46-672", "protein_id": "molecule/1896631|orf_46-672", "rna_call_id": "6116", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2243892|orf_48-674", "protein_id": "molecule/2243892|orf_48-674", "rna_call_id": "5248", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2277834|orf_44-670", "protein_id": "molecule/2277834|orf_44-670", "rna_call_id": "5793", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2369244|orf_43-669", "protein_id": "molecule/2369244|orf_43-669", "rna_call_id": "6122", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2502925|orf_45-671", "protein_id": "molecule/2502925|orf_45-671", "rna_call_id": "5806", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2600411|orf_11-685", "protein_id": "molecule/2600411|orf_11-685", "rna_call_id": "6134", "variant_amino_acid_start": 213 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2629282|orf_47-673", "protein_id": "molecule/2629282|orf_47-673", "rna_call_id": "6137", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/2629287|orf_47-673", "protein_id": "molecule/2629287|orf_47-673", "rna_call_id": "6140", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/271837|orf_42-668", "protein_id": "molecule/271837|orf_42-668", "rna_call_id": "4752", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3005554|orf_43-669", "protein_id": "molecule/3005554|orf_43-669", "rna_call_id": "5284", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3031815|orf_46-672", "protein_id": "molecule/3031815|orf_46-672", "rna_call_id": "6150", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3085879|orf_43-669", "protein_id": "molecule/3085879|orf_43-669", "rna_call_id": "5826", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3158192|orf_43-669", "protein_id": "molecule/3158192|orf_43-669", "rna_call_id": "5286", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3246875|orf_259-675", "protein_id": "molecule/3246875|orf_259-675", "rna_call_id": "6163", "variant_amino_acid_start": 127 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3493006|orf_28-654", "protein_id": "molecule/3493006|orf_28-654", "rna_call_id": "4815", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3496939|orf_19-645", "protein_id": "molecule/3496939|orf_19-645", "rna_call_id": "5291", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3580456|orf_43-669", "protein_id": "molecule/3580456|orf_43-669", "rna_call_id": "5295", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3619747|orf_49-675", "protein_id": "molecule/3619747|orf_49-675", "rna_call_id": "5297", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3619751|orf_48-674", "protein_id": "molecule/3619751|orf_48-674", "rna_call_id": "6179", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3619768|orf_43-669", "protein_id": "molecule/3619768|orf_43-669", "rna_call_id": "5072", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3624875|orf_42-668", "protein_id": "molecule/3624875|orf_42-668", "rna_call_id": "5835", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3664114|orf_42-668", "protein_id": "molecule/3664114|orf_42-668", "rna_call_id": "5074", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3902661|orf_47-673", "protein_id": "molecule/3902661|orf_47-673", "rna_call_id": "4824", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3909094|orf_47-673", "protein_id": "molecule/3909094|orf_47-673", "rna_call_id": "5323", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3991115|orf_47-673", "protein_id": "molecule/3991115|orf_47-673", "rna_call_id": "4626", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4111036|orf_43-669", "protein_id": "molecule/4111036|orf_43-669", "rna_call_id": "4837", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4433251|orf_47-673", "protein_id": "molecule/4433251|orf_47-673", "rna_call_id": "4698", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4473974|orf_42-719", "protein_id": "molecule/4473974|orf_42-719", "rna_call_id": "5082", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4556021|orf_42-668", "protein_id": "molecule/4556021|orf_42-668", "rna_call_id": "4870", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5423741|orf_48-674", "protein_id": "molecule/5423741|orf_48-674", "rna_call_id": "4883", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5497944|orf_48-674", "protein_id": "molecule/5497944|orf_48-674", "rna_call_id": "5426", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5642927|orf_43-669", "protein_id": "molecule/5642927|orf_43-669", "rna_call_id": "5094", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5696462|orf_42-644", "protein_id": "molecule/5696462|orf_42-644", "rna_call_id": "5433", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5779419|orf_48-674", "protein_id": "molecule/5779419|orf_48-674", "rna_call_id": "5437", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5801272|orf_43-669", "protein_id": "molecule/5801272|orf_43-669", "rna_call_id": "5880", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5812246|orf_46-672", "protein_id": "molecule/5812246|orf_46-672", "rna_call_id": "5882", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6227211|orf_47-673", "protein_id": "molecule/6227211|orf_47-673", "rna_call_id": "5470", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6229052|orf_43-669", "protein_id": "molecule/6229052|orf_43-669", "rna_call_id": "4619", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6242703|orf_47-673", "protein_id": "molecule/6242703|orf_47-673", "rna_call_id": "5474", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6267171|orf_46-672", "protein_id": "molecule/6267171|orf_46-672", "rna_call_id": "5477", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6361521|orf_42-668", "protein_id": "molecule/6361521|orf_42-668", "rna_call_id": "4896", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6368826|orf_43-669", "protein_id": "molecule/6368826|orf_43-669", "rna_call_id": "5496", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6368908|orf_28-654", "protein_id": "molecule/6368908|orf_28-654", "rna_call_id": "5890", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6458552|orf_47-673", "protein_id": "molecule/6458552|orf_47-673", "rna_call_id": "5894", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6506733|orf_35-661", "protein_id": "molecule/6506733|orf_35-661", "rna_call_id": "5504", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6654287|orf_43-669", "protein_id": "molecule/6654287|orf_43-669", "rna_call_id": "6228", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6659006|orf_43-669", "protein_id": "molecule/6659006|orf_43-669", "rna_call_id": "5524", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7026565|orf_9-635", "protein_id": "molecule/7026565|orf_9-635", "rna_call_id": "5537", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7132448|orf_43-669", "protein_id": "molecule/7132448|orf_43-669", "rna_call_id": "4912", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7216973|orf_42-668", "protein_id": "molecule/7216973|orf_42-668", "rna_call_id": "4641", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7620765|orf_43-669", "protein_id": "molecule/7620765|orf_43-669", "rna_call_id": "4929", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7739018|orf_43-669", "protein_id": "molecule/7739018|orf_43-669", "rna_call_id": "4938", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7740558|orf_44-670", "protein_id": "molecule/7740558|orf_44-670", "rna_call_id": "5911", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8093175|orf_43-669", "protein_id": "molecule/8093175|orf_43-669", "rna_call_id": "4729", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8154416|orf_42-668", "protein_id": "molecule/8154416|orf_42-668", "rna_call_id": "5102", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8763893|orf_43-669", "protein_id": "molecule/8763893|orf_43-669", "rna_call_id": "4962", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8763895|orf_48-674", "protein_id": "molecule/8763895|orf_48-674", "rna_call_id": "5620", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8803526|orf_43-669", "protein_id": "molecule/8803526|orf_43-669", "rna_call_id": "5934", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8976671|orf_43-669", "protein_id": "molecule/8976671|orf_43-669", "rna_call_id": "5634", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9254182|orf_43-669", "protein_id": "molecule/9254182|orf_43-669", "rna_call_id": "5955", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9281724|orf_43-669", "protein_id": "molecule/9281724|orf_43-669", "rna_call_id": "5960", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9461903|orf_43-669", "protein_id": "molecule/9461903|orf_43-669", "rna_call_id": "5647", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9535324|orf_43-669", "protein_id": "molecule/9535324|orf_43-669", "rna_call_id": "5649", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9541363|orf_47-673", "protein_id": "molecule/9541363|orf_47-673", "rna_call_id": "4993", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9541370|orf_46-672", "protein_id": "molecule/9541370|orf_46-672", "rna_call_id": "4997", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9541377|orf_46-672", "protein_id": "molecule/9541377|orf_46-672", "rna_call_id": "5655", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9559770|orf_43-669", "protein_id": "molecule/9559770|orf_43-669", "rna_call_id": "5001", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9559773|orf_43-669", "protein_id": "molecule/9559773|orf_43-669", "rna_call_id": "5658", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9665833|orf_45-671", "protein_id": "molecule/9665833|orf_45-671", "rna_call_id": "5967", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9676206|orf_48-674", "protein_id": "molecule/9676206|orf_48-674", "rna_call_id": "5114", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9716734|orf_46-672", "protein_id": "molecule/9716734|orf_46-672", "rna_call_id": "4585", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9761681|orf_42-668", "protein_id": "molecule/9761681|orf_42-668", "rna_call_id": "5014", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9853399|orf_47-673", "protein_id": "molecule/9853399|orf_47-673", "rna_call_id": "5679", "variant_amino_acid_start": 197 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9975242|orf_43-669", "protein_id": "molecule/9975242|orf_43-669", "rna_call_id": "5683", "variant_amino_acid_start": 197 }, { "sample": "T2-ILMN", "arm": "spades", "reconstruction_id": "T2-ILMN/spades/NODE_234_length_917_cov_295.735782_g151_i1|orf_96-722", "protein_id": "NODE_234_length_917_cov_295.735782_g151_i1|orf_96-722", "rna_call_id": "987", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/4848|orf_48-674", "protein_id": "4848|orf_48-674", "rna_call_id": "16471", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/4371|orf_47-676", "protein_id": "4371|orf_47-676", "rna_call_id": "7690", "variant_amino_acid_start": 198 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/00e1a7a7-a849-493f-91f3-916756e6767c_0|orf_11-637", "protein_id": "00e1a7a7-a849-493f-91f3-916756e6767c_0|orf_11-637", "rna_call_id": "15670", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670", "protein_id": "054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670", "rna_call_id": "15192", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0658a79d-f8a6-465b-8758-366524843620_0|orf_48-674", "protein_id": "0658a79d-f8a6-465b-8758-366524843620_0|orf_48-674", "rna_call_id": "15567", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/08fe5bcd-b9e0-469e-ba6c-3937bbcda46b_0|orf_44-670", "protein_id": "08fe5bcd-b9e0-469e-ba6c-3937bbcda46b_0|orf_44-670", "rna_call_id": "15751", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-669", "protein_id": "1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-669", "rna_call_id": "15795", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1ef93086-8df7-4a04-a29c-1d6b12aae90a_0|orf_17-691", "protein_id": "1ef93086-8df7-4a04-a29c-1d6b12aae90a_0|orf_17-691", "rna_call_id": "16235", "variant_amino_acid_start": 213 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/20fd2883-b9f7-4282-a480-3cd2739220ad_0|orf_44-670", "protein_id": "20fd2883-b9f7-4282-a480-3cd2739220ad_0|orf_44-670", "rna_call_id": "15390", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/278b380e-3753-4219-a35a-9cae497b3c7f_0|orf_44-670", "protein_id": "278b380e-3753-4219-a35a-9cae497b3c7f_0|orf_44-670", "rna_call_id": "15204", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670", "protein_id": "293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670", "rna_call_id": "15356", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2c53a304-61bc-454e-9b0c-dd9f819dffe5_0|orf_44-670", "protein_id": "2c53a304-61bc-454e-9b0c-dd9f819dffe5_0|orf_44-670", "rna_call_id": "15590", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2efc9e9b-96cc-495e-8dcc-d911cc9d8343_0|orf_43-669", "protein_id": "2efc9e9b-96cc-495e-8dcc-d911cc9d8343_0|orf_43-669", "rna_call_id": "16316", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/34660733-b584-435c-b611-9ddc7849c850_1|orf_43-669", "protein_id": "34660733-b584-435c-b611-9ddc7849c850_1|orf_43-669", "rna_call_id": "15549", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/379c3b22-7ff6-4dd5-9110-7c0a22511929_0|orf_253-669", "protein_id": "379c3b22-7ff6-4dd5-9110-7c0a22511929_0|orf_253-669", "rna_call_id": "15545", "variant_amino_acid_start": 127 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3ad4c0a3-2671-4ecc-ab97-889b5d68e06c_0|orf_43-669", "protein_id": "3ad4c0a3-2671-4ecc-ab97-889b5d68e06c_0|orf_43-669", "rna_call_id": "16291", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3b7cf8a1-03e0-41e1-b4ab-6d7d33d59cc4_0|orf_43-669", "protein_id": "3b7cf8a1-03e0-41e1-b4ab-6d7d33d59cc4_0|orf_43-669", "rna_call_id": "16214", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3de037c0-0452-414d-affa-011587517a1a_0|orf_48-674", "protein_id": "3de037c0-0452-414d-affa-011587517a1a_0|orf_48-674", "rna_call_id": "15524", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3ff9f63e-a2f6-4d75-9e3d-ffcf8183c6e8_0|orf_44-670", "protein_id": "3ff9f63e-a2f6-4d75-9e3d-ffcf8183c6e8_0|orf_44-670", "rna_call_id": "15101", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/415d45cf-6017-4d77-a1e0-f8a1d50c200f_0|orf_44-670", "protein_id": "415d45cf-6017-4d77-a1e0-f8a1d50c200f_0|orf_44-670", "rna_call_id": "16244", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/473959ff-802c-485d-91ab-f76a1d66fe9a_0|orf_44-670", "protein_id": "473959ff-802c-485d-91ab-f76a1d66fe9a_0|orf_44-670", "rna_call_id": "15279", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_49-675", "protein_id": "4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_49-675", "rna_call_id": "16100", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5d2b4724-eba3-45cc-bd3c-b61053dd5aff_0|orf_47-673", "protein_id": "5d2b4724-eba3-45cc-bd3c-b61053dd5aff_0|orf_47-673", "rna_call_id": "15131", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/625a9ca9-6607-42c2-9ba9-2b053f5cd3e5_0|orf_44-670", "protein_id": "625a9ca9-6607-42c2-9ba9-2b053f5cd3e5_0|orf_44-670", "rna_call_id": "16241", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670", "protein_id": "68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670", "rna_call_id": "15304", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670", "protein_id": "68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670", "rna_call_id": "16195", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6a73d850-1113-4f09-84b2-9647a744a5dc_0|orf_44-670", "protein_id": "6a73d850-1113-4f09-84b2-9647a744a5dc_0|orf_44-670", "rna_call_id": "15506", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675", "protein_id": "6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675", "rna_call_id": "15578", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6e3f2a58-07bf-47fc-95d6-e57d174825d5_0|orf_44-670", "protein_id": "6e3f2a58-07bf-47fc-95d6-e57d174825d5_0|orf_44-670", "rna_call_id": "15399", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669", "protein_id": "6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669", "rna_call_id": "16162", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-670", "protein_id": "72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-670", "rna_call_id": "15511", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669", "protein_id": "770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669", "rna_call_id": "16169", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/786ecba7-1163-40c1-9142-8e717527fc28_0|orf_22-696", "protein_id": "786ecba7-1163-40c1-9142-8e717527fc28_0|orf_22-696", "rna_call_id": "15559", "variant_amino_acid_start": 213 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7b85ffa1-c810-45b5-9650-b280e73fa75e_0|orf_49-675", "protein_id": "7b85ffa1-c810-45b5-9650-b280e73fa75e_0|orf_49-675", "rna_call_id": "15393", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670", "protein_id": "833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670", "rna_call_id": "15324", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8653b867-3394-42bc-a8fd-96b7da7bd1ca_0|orf_43-669", "protein_id": "8653b867-3394-42bc-a8fd-96b7da7bd1ca_0|orf_43-669", "rna_call_id": "16211", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670", "protein_id": "87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670", "rna_call_id": "16154", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8f440213-3e7a-40d0-aa54-47b12941a722_0|orf_48-674", "protein_id": "8f440213-3e7a-40d0-aa54-47b12941a722_0|orf_48-674", "rna_call_id": "16189", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-670", "protein_id": "99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-670", "rna_call_id": "16253", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670", "protein_id": "9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670", "rna_call_id": "15327", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9ffcdb49-3aec-4816-a90d-9da82d82c112_0|orf_44-670", "protein_id": "9ffcdb49-3aec-4816-a90d-9da82d82c112_0|orf_44-670", "rna_call_id": "16206", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675", "protein_id": "a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675", "rna_call_id": "16097", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a284d2c8-997b-4db5-bb9b-7750aa918e6c_0|orf_43-669", "protein_id": "a284d2c8-997b-4db5-bb9b-7750aa918e6c_0|orf_43-669", "rna_call_id": "15657", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674", "protein_id": "a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674", "rna_call_id": "15502", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a3014ab1-2fc4-49dc-971b-aaff607eb2fc_0|orf_44-670", "protein_id": "a3014ab1-2fc4-49dc-971b-aaff607eb2fc_0|orf_44-670", "rna_call_id": "16288", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670", "protein_id": "a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670", "rna_call_id": "16143", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-670", "protein_id": "a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-670", "rna_call_id": "15722", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ad0300a7-20a8-4d81-9c7d-2300127d58ef_0|orf_48-674", "protein_id": "ad0300a7-20a8-4d81-9c7d-2300127d58ef_0|orf_48-674", "rna_call_id": "15651", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-670", "protein_id": "b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-670", "rna_call_id": "15153", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-670", "protein_id": "b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-670", "rna_call_id": "15232", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/c21537b1-9480-40ad-b7e7-31b8024c5119_0|orf_43-669", "protein_id": "c21537b1-9480-40ad-b7e7-31b8024c5119_0|orf_43-669", "rna_call_id": "16297", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/c26a52cb-be64-4f94-b766-4123cf3546f2_0|orf_43-669", "protein_id": "c26a52cb-be64-4f94-b766-4123cf3546f2_0|orf_43-669", "rna_call_id": "16402", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/c7d15036-4f25-42ea-adda-d5ba4189b18d_0|orf_43-669", "protein_id": "c7d15036-4f25-42ea-adda-d5ba4189b18d_0|orf_43-669", "rna_call_id": "16259", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670", "protein_id": "ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670", "rna_call_id": "15315", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ceb41408-0f12-4929-8914-0c76724a5fe1_0|orf_44-670", "protein_id": "ceb41408-0f12-4929-8914-0c76724a5fe1_0|orf_44-670", "rna_call_id": "15593", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d6fa3932-decb-41c2-9b9e-c1dff5878895_0|orf_44-670", "protein_id": "d6fa3932-decb-41c2-9b9e-c1dff5878895_0|orf_44-670", "rna_call_id": "16281", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/de9f9123-ff2a-4cd6-a809-b6ddbb48e37e_0|orf_46-672", "protein_id": "de9f9123-ff2a-4cd6-a809-b6ddbb48e37e_0|orf_46-672", "rna_call_id": "15336", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e23b92a1-5e1a-4f6a-882b-2284ec9bb3e3_0|orf_49-675", "protein_id": "e23b92a1-5e1a-4f6a-882b-2284ec9bb3e3_0|orf_49-675", "rna_call_id": "15910", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646", "protein_id": "e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646", "rna_call_id": "15444", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e556685c-989d-4d73-867a-690aab68e19d_0|orf_44-670", "protein_id": "e556685c-989d-4d73-867a-690aab68e19d_0|orf_44-670", "rna_call_id": "16223", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ee340ba0-088d-49e8-b790-fc1423e29b47_0|orf_48-674", "protein_id": "ee340ba0-088d-49e8-b790-fc1423e29b47_0|orf_48-674", "rna_call_id": "15822", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/eed4e4df-213d-4c9f-855d-3f555068da8a_0|orf_44-670", "protein_id": "eed4e4df-213d-4c9f-855d-3f555068da8a_0|orf_44-670", "rna_call_id": "16179", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f1276bdf-f624-4d8b-a9b3-54746b52bae7_0|orf_44-670", "protein_id": "f1276bdf-f624-4d8b-a9b3-54746b52bae7_0|orf_44-670", "rna_call_id": "16082", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f2a7a88b-1745-466f-807d-0ded1a965898_0|orf_44-670", "protein_id": "f2a7a88b-1745-466f-807d-0ded1a965898_0|orf_44-670", "rna_call_id": "15189", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fbc5d884-01b8-4519-a712-2774b2228229_0|orf_44-670", "protein_id": "fbc5d884-01b8-4519-a712-2774b2228229_0|orf_44-670", "rna_call_id": "15756", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671", "protein_id": "fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671", "rna_call_id": "16118", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664", "protein_id": "fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664", "rna_call_id": "15343", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670", "protein_id": "fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670", "rna_call_id": "15707", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "isonform", "reconstruction_id": "T2-ONT/isonform/3_0_222|orf_45-671", "protein_id": "3_0_222|orf_45-671", "rna_call_id": "267", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "isonform", "reconstruction_id": "T2-ONT/isonform/3_0_7|orf_521-1195", "protein_id": "3_0_7|orf_521-1195", "rna_call_id": "260", "variant_amino_acid_start": 213 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670", "protein_id": "054a57a1-d902-46de-ab80-c83ce5bd9dd9_0|orf_44-670", "rna_call_id": "44744", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-666", "protein_id": "1cd9cdd2-aef7-4359-b7d5-17bc6c89727b_0|orf_43-666", "rna_call_id": "45883", "variant_amino_acid_start": 196 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/278b380e-3753-4219-a35a-9cae497b3c7f_0|orf_44-646", "protein_id": "278b380e-3753-4219-a35a-9cae497b3c7f_0|orf_44-646", "rna_call_id": "44558", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670", "protein_id": "293f1abb-229b-4977-8cbb-7a44441951a9_0|orf_44-670", "rna_call_id": "45331", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_48-674", "protein_id": "4d1d1cb2-44b0-4a12-a9b7-eef55cf8902d_0|orf_48-674", "rna_call_id": "46838", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670", "protein_id": "68231a98-b99f-4627-8bb7-11ad1889e433_0|orf_44-670", "rna_call_id": "45415", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670", "protein_id": "68f711a5-f96a-49fb-93c7-88e66e25ac6b_0|orf_44-670", "rna_call_id": "47397", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675", "protein_id": "6ba6827e-05c3-4787-bdcd-cec34ff3013b_0|orf_49-675", "rna_call_id": "45117", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669", "protein_id": "6ee73a81-7760-4a44-8b9d-c233b97b4392_0|orf_43-669", "rna_call_id": "47246", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-667", "protein_id": "72ed85be-28fc-4cbd-b3bb-77e78cb0cee5_0|orf_44-667", "rna_call_id": "45306", "variant_amino_acid_start": 196 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669", "protein_id": "770a0ea2-8b06-4af6-a258-24d197f1e182_0|orf_43-669", "rna_call_id": "47909", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7b335514-1380-4257-b451-f61559e03856_0|orf_255-665", "protein_id": "7b335514-1380-4257-b451-f61559e03856_0|orf_255-665", "rna_call_id": "45912", "variant_amino_acid_start": 125 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670", "protein_id": "833c42ff-ae63-4790-8723-816bc0c6f15a_0|orf_44-670", "rna_call_id": "45389", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670", "protein_id": "87b48142-7b71-496a-9f90-f4a65217fbc4_0|orf_44-670", "rna_call_id": "47155", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-664", "protein_id": "99cae73d-df9c-4a4f-b6b1-54ed8dbf1936_0|orf_44-664", "rna_call_id": "47893", "variant_amino_acid_start": 195 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670", "protein_id": "9bea7166-8da4-491d-b9f8-f965e7054a59_0|orf_44-670", "rna_call_id": "44840", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675", "protein_id": "a25044c3-2256-4231-bf9b-5429dba79ae8_0|orf_49-675", "rna_call_id": "47007", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674", "protein_id": "a2fbc35a-373b-4189-a6f2-8a3a332ba51d_0|orf_48-674", "rna_call_id": "45654", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670", "protein_id": "a4b35449-155e-4c8d-ad4c-e5019c08ee40_0|orf_44-670", "rna_call_id": "47324", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-667", "protein_id": "a53d25a3-8a8b-4d56-bf35-00fbdcce69ba_0|orf_44-667", "rna_call_id": "45952", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-667", "protein_id": "b4ba751f-af7e-4ccf-a311-bb667fcb2b56_0|orf_44-667", "rna_call_id": "44510", "variant_amino_acid_start": 196 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-664", "protein_id": "b7927892-a77e-46e9-8c42-03a431f186d5_0|orf_44-664", "rna_call_id": "44582", "variant_amino_acid_start": 195 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670", "protein_id": "ca14535f-1d53-4cf0-8921-ae75b0171f8f_0|orf_44-670", "rna_call_id": "44805", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646", "protein_id": "e272ca74-e06f-4b3b-b28a-2815b4c19d51_0|orf_20-646", "rna_call_id": "45018", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671", "protein_id": "fd47d90b-e8fa-4fe0-9e00-546166807822_0|orf_45-671", "rna_call_id": "47506", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664", "protein_id": "fe69035c-25e5-4ac5-8382-40aaef4f8884_0|orf_38-664", "rna_call_id": "44835", "variant_amino_acid_start": 197 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670", "protein_id": "fefadaa5-f992-4e6c-9c40-b59247cd3a64_0|orf_44-670", "rna_call_id": "45888", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/17dcd23f-1e2a-45a5-85e2-e7a0ca76a5ac_0|orf_44-670", "protein_id": "17dcd23f-1e2a-45a5-85e2-e7a0ca76a5ac_0|orf_44-670", "rna_call_id": "53674", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/4028efaf-b681-4fec-b4be-261db0562201_0|orf_49-675", "protein_id": "4028efaf-b681-4fec-b4be-261db0562201_0|orf_49-675", "rna_call_id": "56013", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/5476238d-8936-4f7c-b883-afe7dc67ca92_0|orf_44-670", "protein_id": "5476238d-8936-4f7c-b883-afe7dc67ca92_0|orf_44-670", "rna_call_id": "55501", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/805ff3a9-0de9-4bed-b83f-69bc1bc780c9_0|orf_44-670", "protein_id": "805ff3a9-0de9-4bed-b83f-69bc1bc780c9_0|orf_44-670", "rna_call_id": "53003", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/9529b7df-3b95-402a-bb7f-e79eda4de2b2_0|orf_16-642", "protein_id": "9529b7df-3b95-402a-bb7f-e79eda4de2b2_0|orf_16-642", "rna_call_id": "55512", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/9d73538e-aa8f-425a-9c4b-f1d03decd394_0|orf_50-676", "protein_id": "9d73538e-aa8f-425a-9c4b-f1d03decd394_0|orf_50-676", "rna_call_id": "56941", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/b099a8db-a8a3-4321-a4c3-275f37df801b_0|orf_44-670", "protein_id": "b099a8db-a8a3-4321-a4c3-275f37df801b_0|orf_44-670", "rna_call_id": "57011", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/d81cc75f-12ce-4528-bb1e-d0a288abffed_0|orf_43-741", "protein_id": "d81cc75f-12ce-4528-bb1e-d0a288abffed_0|orf_43-741", "rna_call_id": "56447", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/ed20e7e9-f81b-47f6-9227-a88481cfdadb_0|orf_49-675", "protein_id": "ed20e7e9-f81b-47f6-9227-a88481cfdadb_0|orf_49-675", "rna_call_id": "53396", "variant_amino_acid_start": 197 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/f29f5411-d9a6-4cf5-9e4b-2a10c907cf19_0|orf_48-674", "protein_id": "f29f5411-d9a6-4cf5-9e4b-2a10c907cf19_0|orf_48-674", "rna_call_id": "54255", "variant_amino_acid_start": 197 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 2 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 114 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 114 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 152 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 150 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 81 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 2 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 83 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 21 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 366, "alt_reads": 26, "total_reads": 454, "vaf": 0.0573, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 469, "alt_reads": 0, "total_reads": 473, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 460, "alt_reads": 17, "total_reads": 495, "vaf": 0.0343, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 302, "alt_reads": 0, "total_reads": 340, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 443, "alt_reads": 18, "total_reads": 490, "vaf": 0.0367, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 641, "alt_reads": 64, "total_reads": 724, "vaf": 0.0884, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 1302, "alt_reads": 123, "total_reads": 1458, "vaf": 0.0844, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 622, "alt_reads": 71, "total_reads": 714, "vaf": 0.0994, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 85, "alt_reads": 0, "total_reads": 98, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 252, "alt_reads": 0, "total_reads": 285, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 64, "alt_reads": 0, "total_reads": 76, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 62, "alt_reads": 0, "total_reads": 72, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 3274, "alt_reads": 751, "total_reads": 4075, "vaf": 0.1843, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 14994, "alt_reads": 2998, "total_reads": 18173, "vaf": 0.165, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 2720, "alt_reads": 54, "total_reads": 2801, "vaf": 0.0193, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 2998, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 751, "category": "multiple", "sid_alt_reads": 751, "exacto_raw_rnas": 114 }, "T2-ONT": { "max_alt_reads": 2998, "category": "multiple", "sid_alt_reads": 2998, "exacto_raw_rnas": 83 }, "T3-ONT": { "max_alt_reads": 54, "category": "multiple", "sid_alt_reads": 54, "exacto_raw_rnas": 21 }, "T1-PacBio": { "max_alt_reads": 150, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 150 }, "T2-ILMN": { "max_alt_reads": 123, "category": "multiple", "sid_alt_reads": 123, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "CUL9-chr6-43186384", "gene": "CUL9", "chrom": "chr6", "pos": 43186384, "ref": "G", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Asp403Tyr", "consequence": "missense_variant", "vaccines": [ "JLF V2" ], "published_vaccine_peptides": [ { "peptide_id": "CUL9-chr6-43186384.peptide-1", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038R.MT.33.CUL9", "pool": "L3", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.33.CUL9.1", "pool": "NA", "result": "Positive (Weak)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "RMLDYYEEISAGDEGEFRQSKKK", "scoring_region": { "sequence": "RMLDYYEEISAGDEGEFRQS", "start": 0, "end": 20, "terminal_tags": [ { "terminus": "C", "start": 20, "end": 23, "sequence": "KKK" } ] }, "matches": [] } ], "candidate_outcome": "no_call", "residue_confirmed": null, "reconstructed_candidates": [], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 27, "alt_reads": 2, "total_reads": 29, "vaf": 0.069, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 211, "alt_reads": 0, "total_reads": 211, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 42, "alt_reads": 0, "total_reads": 42, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 43, "alt_reads": 3, "total_reads": 46, "vaf": 0.0652, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 42, "alt_reads": 0, "total_reads": 42, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 72, "alt_reads": 0, "total_reads": 72, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 147, "alt_reads": 0, "total_reads": 147, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 71, "alt_reads": 0, "total_reads": 71, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 13, "alt_reads": 0, "total_reads": 13, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 13, "alt_reads": 0, "total_reads": 13, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 9, "alt_reads": 0, "total_reads": 9, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 13, "alt_reads": 0, "total_reads": 13, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 21, "alt_reads": 0, "total_reads": 21, "vaf": 0.0, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 9, "alt_reads": 0, "total_reads": 9, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 0, "category": "zero", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "ADGRF5-chr6-46856758", "gene": "ADGRF5", "chrom": "chr6", "pos": 46856758, "ref": "T", "alt": "C", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Asn1279Ser", "consequence": "missense_variant", "vaccines": [ "JLF V2" ], "published_vaccine_peptides": [ { "peptide_id": "ADGRF5-chr6-46856758.peptide-1", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038R.MT.34.ADGRF5", "pool": "L3", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.34.ADGRF5.1", "pool": "NA", "result": "Positive (Weak)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "VQEALLSKFSLSRWSSQHSKST", "scoring_region": { "sequence": "VQEALLSKFSLSRWSSQHSKST", "start": 0, "end": 22, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "no_call", "residue_confirmed": null, "reconstructed_candidates": [], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 17, "alt_reads": 0, "total_reads": 17, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 65, "alt_reads": 0, "total_reads": 65, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 26, "alt_reads": 0, "total_reads": 26, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 29, "alt_reads": 0, "total_reads": 29, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 25, "alt_reads": 0, "total_reads": 25, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 34, "alt_reads": 0, "total_reads": 34, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 87, "alt_reads": 0, "total_reads": 88, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 39, "alt_reads": 0, "total_reads": 39, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 15, "alt_reads": 0, "total_reads": 15, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 51, "alt_reads": 0, "total_reads": 51, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 24, "alt_reads": 0, "total_reads": 24, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 4, "alt_reads": 0, "total_reads": 4, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 141, "alt_reads": 0, "total_reads": 141, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 159, "alt_reads": 0, "total_reads": 159, "vaf": 0.0, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 24, "alt_reads": 0, "total_reads": 24, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 0, "category": "zero", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "CD109-chr6-73818405", "gene": "CD109", "chrom": "chr6", "pos": 73818405, "ref": "G", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Arg1310Met", "consequence": "missense_variant", "vaccines": [ "JLF V3" ], "published_vaccine_peptides": [ { "peptide_id": "CD109-chr6-73818405.peptide-1", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "SFSGPGMSGMALMEVNLLSGKKK", "scoring_region": { "sequence": "SFSGPGMSGMALMEVNLLSG", "start": 0, "end": 20, "terminal_tags": [ { "terminus": "C", "start": 20, "end": 23, "sequence": "KKK" } ] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/07ae1611-3e4e-4218-888f-57f2f7c507c0_0|orf_6-527", "protein_id": "07ae1611-3e4e-4218-888f-57f2f7c507c0_0|orf_6-527", "rna_call_id": "41614", "amino_acid_starts": [ 140 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c67d6556-7055-417f-a503-2e66f3ef5d5b_0|orf_6-851", "protein_id": "c67d6556-7055-417f-a503-2e66f3ef5d5b_0|orf_6-851", "rna_call_id": "41605", "amino_acid_starts": [ 140 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d685e368-b0c5-4e0d-8724-b072a9910182_0|orf_125-1366", "protein_id": "d685e368-b0c5-4e0d-8724-b072a9910182_0|orf_125-1366", "rna_call_id": "41205", "amino_acid_starts": [ 348 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5462567|orf_68-1537", "protein_id": "molecule/5462567|orf_68-1537", "rna_call_id": "6436", "amino_acid_starts": [ 348 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6967317|orf_5-1399", "protein_id": "molecule/6967317|orf_5-1399", "rna_call_id": "6432", "amino_acid_starts": [ 388 ] }, { "sample": "T2-ONT", "arm": "assembly", "reconstruction_id": "T2-ONT/assembly/3136|orf_28-645", "protein_id": "3136|orf_28-645", "rna_call_id": "2426", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "assembly", "reconstruction_id": "T2-ONT/assembly/4425|orf_54-539", "protein_id": "4425|orf_54-539", "rna_call_id": "2419", "amino_acid_starts": [ 107 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/3095|orf_28-645", "protein_id": "3095|orf_28-645", "rna_call_id": "7984", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/3097|orf_16-657", "protein_id": "3097|orf_16-657", "rna_call_id": "7979", "amino_acid_starts": [ 72 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/4204|orf_47-1057", "protein_id": "4204|orf_47-1057", "rna_call_id": "7903", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/3119|orf_47-1057", "protein_id": "3119|orf_47-1057", "rna_call_id": "17841", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/3120|orf_36-1046", "protein_id": "3120|orf_36-1046", "rna_call_id": "17844", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/3123|orf_28-645", "protein_id": "3123|orf_28-645", "rna_call_id": "17927", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/3098|orf_28-645", "protein_id": "3098|orf_28-645", "rna_call_id": "8411", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728", "protein_id": "0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728", "rna_call_id": "17604", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1634caa5-09e3-4e97-bfa3-e117841b46cb_0|orf_268-1278", "protein_id": "1634caa5-09e3-4e97-bfa3-e117841b46cb_0|orf_268-1278", "rna_call_id": "17420", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1ab3adf8-997a-4cde-99cd-443bc6098a00_0|orf_37-1047", "protein_id": "1ab3adf8-997a-4cde-99cd-443bc6098a00_0|orf_37-1047", "rna_call_id": "17478", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1cf75a3f-7ea2-415c-ad4a-4eaeef329361_0|orf_22-900", "protein_id": "1cf75a3f-7ea2-415c-ad4a-4eaeef329361_0|orf_22-900", "rna_call_id": "17488", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/25407472-da26-402c-8cf0-80451a3b83ea_0|orf_319-1518", "protein_id": "25407472-da26-402c-8cf0-80451a3b83ea_0|orf_319-1518", "rna_call_id": "17416", "amino_acid_starts": [ 258 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/347e5b78-865c-44c7-950f-d47f3b25303b_0|orf_48-893", "protein_id": "347e5b78-865c-44c7-950f-d47f3b25303b_0|orf_48-893", "rna_call_id": "17516", "amino_acid_starts": [ 140 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_128-1138", "protein_id": "3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_128-1138", "rna_call_id": "17460", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685", "protein_id": "48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685", "rna_call_id": "17598", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/55b4c0e1-d55a-4a83-8377-3fc2cf90c79b_0|orf_69-1079", "protein_id": "55b4c0e1-d55a-4a83-8377-3fc2cf90c79b_0|orf_69-1079", "rna_call_id": "17465", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5edb3def-938c-4b35-97fe-0b34c9d3fb53_0|orf_28-645", "protein_id": "5edb3def-938c-4b35-97fe-0b34c9d3fb53_0|orf_28-645", "rna_call_id": "17654", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-670", "protein_id": "70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-670", "rna_call_id": "17631", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680", "protein_id": "84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680", "rna_call_id": "17619", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8b275a85-ef61-4cf3-8782-32a079ae1933_0|orf_51-1061", "protein_id": "8b275a85-ef61-4cf3-8782-32a079ae1933_0|orf_51-1061", "rna_call_id": "17473", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/909e0ee0-0dab-40f0-801b-4253ce22cbca_0|orf_1-618", "protein_id": "909e0ee0-0dab-40f0-801b-4253ce22cbca_0|orf_1-618", "rna_call_id": "17671", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9ae25983-2454-4d7b-a688-df2c544d7f5e_0|orf_150-1160", "protein_id": "9ae25983-2454-4d7b-a688-df2c544d7f5e_0|orf_150-1160", "rna_call_id": "17457", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291", "protein_id": "a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291", "rna_call_id": "17448", "amino_acid_starts": [ 57 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/aaa4e19c-8359-4ef0-b65e-342bd8bf3235_0|orf_30-776", "protein_id": "aaa4e19c-8359-4ef0-b65e-342bd8bf3235_0|orf_30-776", "rna_call_id": "17581", "amino_acid_starts": [ 107 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b0884250-7f95-40e9-bfd6-fde0ff6a6806_0|orf_33-779", "protein_id": "b0884250-7f95-40e9-bfd6-fde0ff6a6806_0|orf_33-779", "rna_call_id": "17578", "amino_acid_starts": [ 107 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668", "protein_id": "bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668", "rna_call_id": "17639", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_191-1201", "protein_id": "bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_191-1201", "rna_call_id": "17433", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ca5f972d-de5f-49b2-bb94-19e6e5a6b00e_0|orf_7-600", "protein_id": "ca5f972d-de5f-49b2-bb94-19e6e5a6b00e_0|orf_7-600", "rna_call_id": "17546", "amino_acid_starts": [ 138 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-732", "protein_id": "d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-732", "rna_call_id": "17553", "amino_acid_starts": [ 72 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666", "protein_id": "dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666", "rna_call_id": "17645", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_758-4375", "protein_id": "e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_758-4375", "rna_call_id": "17357", "amino_acid_starts": [ 1064 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_46-792", "protein_id": "f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_46-792", "rna_call_id": "17573", "amino_acid_starts": [ 107 ] }, { "sample": "T2-ONT", "arm": "isonform", "reconstruction_id": "T2-ONT/isonform/25_0_1|orf_758-4375", "protein_id": "25_0_1|orf_758-4375", "rna_call_id": "320", "amino_acid_starts": [ 1064 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728", "protein_id": "0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728", "rna_call_id": "51691", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/25407472-da26-402c-8cf0-80451a3b83ea_0|orf_507-1517", "protein_id": "25407472-da26-402c-8cf0-80451a3b83ea_0|orf_507-1517", "rna_call_id": "50964", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_127-1137", "protein_id": "3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_127-1137", "rna_call_id": "51110", "amino_acid_starts": [ 195 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685", "protein_id": "48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685", "rna_call_id": "51677", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-682", "protein_id": "70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-682", "rna_call_id": "51776", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680", "protein_id": "84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680", "rna_call_id": "51761", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291", "protein_id": "a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291", "rna_call_id": "51087", "amino_acid_starts": [ 57 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668", "protein_id": "bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668", "rna_call_id": "51823", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_226-1203", "protein_id": "bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_226-1203", "rna_call_id": "51020", "amino_acid_starts": [ 184 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-741", "protein_id": "d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-741", "rna_call_id": "51563", "amino_acid_starts": [ 72 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666", "protein_id": "dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666", "rna_call_id": "51828", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_2433-4211", "protein_id": "e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_2433-4211", "rna_call_id": "50806", "amino_acid_starts": [ 505 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_171-785", "protein_id": "f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_171-785", "rna_call_id": "51603", "amino_acid_starts": [ 63 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/f4f1fe82-2734-437e-8372-e1f5bdec2b9f_0|orf_69-989", "protein_id": "f4f1fe82-2734-437e-8372-e1f5bdec2b9f_0|orf_69-989", "rna_call_id": "57862", "amino_acid_starts": [ 195 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/60855f85-bb13-41df-99b1-85a054a7014a_0|orf_11-421", "protein_id": "60855f85-bb13-41df-99b1-85a054a7014a_0|orf_11-421", "rna_call_id": "12768", "variant_amino_acid_start": 1 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/07ae1611-3e4e-4218-888f-57f2f7c507c0_0|orf_6-527", "protein_id": "07ae1611-3e4e-4218-888f-57f2f7c507c0_0|orf_6-527", "rna_call_id": "41614", "variant_amino_acid_start": 146 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c67d6556-7055-417f-a503-2e66f3ef5d5b_0|orf_6-851", "protein_id": "c67d6556-7055-417f-a503-2e66f3ef5d5b_0|orf_6-851", "rna_call_id": "41605", "variant_amino_acid_start": 146 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d685e368-b0c5-4e0d-8724-b072a9910182_0|orf_125-1366", "protein_id": "d685e368-b0c5-4e0d-8724-b072a9910182_0|orf_125-1366", "rna_call_id": "41205", "variant_amino_acid_start": 354 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5462567|orf_68-1537", "protein_id": "molecule/5462567|orf_68-1537", "rna_call_id": "6436", "variant_amino_acid_start": 354 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6967317|orf_5-1399", "protein_id": "molecule/6967317|orf_5-1399", "rna_call_id": "6432", "variant_amino_acid_start": 394 }, { "sample": "T2-ONT", "arm": "assembly", "reconstruction_id": "T2-ONT/assembly/3136|orf_28-645", "protein_id": "3136|orf_28-645", "rna_call_id": "2426", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "assembly", "reconstruction_id": "T2-ONT/assembly/4425|orf_54-539", "protein_id": "4425|orf_54-539", "rna_call_id": "2419", "variant_amino_acid_start": 113 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/3095|orf_28-645", "protein_id": "3095|orf_28-645", "rna_call_id": "7984", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/3097|orf_16-657", "protein_id": "3097|orf_16-657", "rna_call_id": "7979", "variant_amino_acid_start": 78 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/4204|orf_47-1057", "protein_id": "4204|orf_47-1057", "rna_call_id": "7903", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/3119|orf_47-1057", "protein_id": "3119|orf_47-1057", "rna_call_id": "17841", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/3120|orf_36-1046", "protein_id": "3120|orf_36-1046", "rna_call_id": "17844", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "reconstruction_id": "T2-ONT/assembly-permissive/3123|orf_28-645", "protein_id": "3123|orf_28-645", "rna_call_id": "17927", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "reconstruction_id": "T2-ONT/assembly-unspliced/3098|orf_28-645", "protein_id": "3098|orf_28-645", "rna_call_id": "8411", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/07bfe2b7-a119-4a43-ad88-ee9aa38d3d58_0|orf_147-557", "protein_id": "07bfe2b7-a119-4a43-ad88-ee9aa38d3d58_0|orf_147-557", "rna_call_id": "17709", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/09a0f7dc-92b8-49a2-bfaf-588c9ef4825d_0|orf_169-579", "protein_id": "09a0f7dc-92b8-49a2-bfaf-588c9ef4825d_0|orf_169-579", "rna_call_id": "17696", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0ad0f4a6-e936-4391-8b6f-ea6db5ced972_0|orf_100-510", "protein_id": "0ad0f4a6-e936-4391-8b6f-ea6db5ced972_0|orf_100-510", "rna_call_id": "17798", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728", "protein_id": "0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728", "rna_call_id": "17604", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0b8f37ba-4c40-4afb-ab7b-5b1ce63f9aab_0|orf_64-474", "protein_id": "0b8f37ba-4c40-4afb-ab7b-5b1ce63f9aab_0|orf_64-474", "rna_call_id": "17822", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1634caa5-09e3-4e97-bfa3-e117841b46cb_0|orf_268-1278", "protein_id": "1634caa5-09e3-4e97-bfa3-e117841b46cb_0|orf_268-1278", "rna_call_id": "17420", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1ab3adf8-997a-4cde-99cd-443bc6098a00_0|orf_37-1047", "protein_id": "1ab3adf8-997a-4cde-99cd-443bc6098a00_0|orf_37-1047", "rna_call_id": "17478", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/1cf75a3f-7ea2-415c-ad4a-4eaeef329361_0|orf_22-900", "protein_id": "1cf75a3f-7ea2-415c-ad4a-4eaeef329361_0|orf_22-900", "rna_call_id": "17488", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/25407472-da26-402c-8cf0-80451a3b83ea_0|orf_319-1518", "protein_id": "25407472-da26-402c-8cf0-80451a3b83ea_0|orf_319-1518", "rna_call_id": "17416", "variant_amino_acid_start": 264 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/25c43666-0c33-4145-93b5-601a0c6b7fb7_0|orf_54-464", "protein_id": "25c43666-0c33-4145-93b5-601a0c6b7fb7_0|orf_54-464", "rna_call_id": "17830", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/301ec41a-67f8-435f-b167-5fa4e1ad1c72_0|orf_109-519", "protein_id": "301ec41a-67f8-435f-b167-5fa4e1ad1c72_0|orf_109-519", "rna_call_id": "17786", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/347e5b78-865c-44c7-950f-d47f3b25303b_0|orf_48-893", "protein_id": "347e5b78-865c-44c7-950f-d47f3b25303b_0|orf_48-893", "rna_call_id": "17516", "variant_amino_acid_start": 146 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3c09be9b-a2b8-4747-b58d-b45bd7f2800a_0|orf_146-556", "protein_id": "3c09be9b-a2b8-4747-b58d-b45bd7f2800a_0|orf_146-556", "rna_call_id": "17716", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_128-1138", "protein_id": "3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_128-1138", "rna_call_id": "17460", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/41c5a9ac-7960-45fc-bad8-d06cab26045f_0|orf_80-484", "protein_id": "41c5a9ac-7960-45fc-bad8-d06cab26045f_0|orf_80-484", "rna_call_id": "17811", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685", "protein_id": "48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685", "rna_call_id": "17598", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4c67fcac-f1a2-4e7e-b224-b10e03aa46f4_0|orf_81-230", "protein_id": "4c67fcac-f1a2-4e7e-b224-b10e03aa46f4_0|orf_81-230", "rna_call_id": "17805", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4d93d68f-5da0-4b29-a8a0-f2615352956f_0|orf_128-538", "protein_id": "4d93d68f-5da0-4b29-a8a0-f2615352956f_0|orf_128-538", "rna_call_id": "17733", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/53da64e5-242b-4770-94f7-71f042165aff_0|orf_113-523", "protein_id": "53da64e5-242b-4770-94f7-71f042165aff_0|orf_113-523", "rna_call_id": "17770", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/55b4c0e1-d55a-4a83-8377-3fc2cf90c79b_0|orf_69-1079", "protein_id": "55b4c0e1-d55a-4a83-8377-3fc2cf90c79b_0|orf_69-1079", "rna_call_id": "17465", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/5edb3def-938c-4b35-97fe-0b34c9d3fb53_0|orf_28-645", "protein_id": "5edb3def-938c-4b35-97fe-0b34c9d3fb53_0|orf_28-645", "rna_call_id": "17654", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-670", "protein_id": "70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-670", "rna_call_id": "17631", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/730fe512-f7c4-4949-9ca6-45553f6a7944_0|orf_124-534", "protein_id": "730fe512-f7c4-4949-9ca6-45553f6a7944_0|orf_124-534", "rna_call_id": "17742", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680", "protein_id": "84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680", "rna_call_id": "17619", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8b275a85-ef61-4cf3-8782-32a079ae1933_0|orf_51-1061", "protein_id": "8b275a85-ef61-4cf3-8782-32a079ae1933_0|orf_51-1061", "rna_call_id": "17473", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/909e0ee0-0dab-40f0-801b-4253ce22cbca_0|orf_1-618", "protein_id": "909e0ee0-0dab-40f0-801b-4253ce22cbca_0|orf_1-618", "rna_call_id": "17671", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/947c6cc6-7a2c-4a40-8142-01a8fc686c9a_0|orf_29-439", "protein_id": "947c6cc6-7a2c-4a40-8142-01a8fc686c9a_0|orf_29-439", "rna_call_id": "17846", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9ae25983-2454-4d7b-a688-df2c544d7f5e_0|orf_150-1160", "protein_id": "9ae25983-2454-4d7b-a688-df2c544d7f5e_0|orf_150-1160", "rna_call_id": "17457", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9b955873-1b39-4396-9346-e9f4d71d1e02_0|orf_57-467", "protein_id": "9b955873-1b39-4396-9346-e9f4d71d1e02_0|orf_57-467", "rna_call_id": "17828", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291", "protein_id": "a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291", "rna_call_id": "17448", "variant_amino_acid_start": 63 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/aaa4e19c-8359-4ef0-b65e-342bd8bf3235_0|orf_30-776", "protein_id": "aaa4e19c-8359-4ef0-b65e-342bd8bf3235_0|orf_30-776", "rna_call_id": "17581", "variant_amino_acid_start": 113 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/b0884250-7f95-40e9-bfd6-fde0ff6a6806_0|orf_33-779", "protein_id": "b0884250-7f95-40e9-bfd6-fde0ff6a6806_0|orf_33-779", "rna_call_id": "17578", "variant_amino_acid_start": 113 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bad4d685-5e8c-4bc2-a995-44e2edd38aa8_0|orf_147-557", "protein_id": "bad4d685-5e8c-4bc2-a995-44e2edd38aa8_0|orf_147-557", "rna_call_id": "17714", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668", "protein_id": "bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668", "rna_call_id": "17639", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bf52980e-e6de-4bc9-8b9d-9c142423e540_0|orf_74-484", "protein_id": "bf52980e-e6de-4bc9-8b9d-9c142423e540_0|orf_74-484", "rna_call_id": "17817", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_191-1201", "protein_id": "bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_191-1201", "rna_call_id": "17433", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/c2650bc4-7477-4aa0-951a-2130cb92fbcd_0|orf_154-564", "protein_id": "c2650bc4-7477-4aa0-951a-2130cb92fbcd_0|orf_154-564", "rna_call_id": "17703", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/ca5f972d-de5f-49b2-bb94-19e6e5a6b00e_0|orf_7-600", "protein_id": "ca5f972d-de5f-49b2-bb94-19e6e5a6b00e_0|orf_7-600", "rna_call_id": "17546", "variant_amino_acid_start": 144 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-732", "protein_id": "d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-732", "rna_call_id": "17553", "variant_amino_acid_start": 78 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/dc8eb000-4a0e-48bf-a3c6-a9cc4a7e54d7_0|orf_362-772", "protein_id": "dc8eb000-4a0e-48bf-a3c6-a9cc4a7e54d7_0|orf_362-772", "rna_call_id": "17589", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666", "protein_id": "dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666", "rna_call_id": "17645", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_758-4375", "protein_id": "e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_758-4375", "rna_call_id": "17357", "variant_amino_acid_start": 1070 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_46-792", "protein_id": "f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_46-792", "rna_call_id": "17573", "variant_amino_acid_start": 113 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fb7475dc-637f-4ba5-ad59-682d012cdea2_0|orf_30-440", "protein_id": "fb7475dc-637f-4ba5-ad59-682d012cdea2_0|orf_30-440", "rna_call_id": "17850", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fc43cef0-1fd7-4d18-950e-bb368d5d7aeb_0|orf_143-553", "protein_id": "fc43cef0-1fd7-4d18-950e-bb368d5d7aeb_0|orf_143-553", "rna_call_id": "17721", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fc973578-fb89-458e-91a5-c812a90561a5_0|orf_135-545", "protein_id": "fc973578-fb89-458e-91a5-c812a90561a5_0|orf_135-545", "rna_call_id": "17729", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "isonform", "reconstruction_id": "T2-ONT/isonform/25_0_1|orf_758-4375", "protein_id": "25_0_1|orf_758-4375", "rna_call_id": "320", "variant_amino_acid_start": 1070 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/07bfe2b7-a119-4a43-ad88-ee9aa38d3d58_0|orf_147-557", "protein_id": "07bfe2b7-a119-4a43-ad88-ee9aa38d3d58_0|orf_147-557", "rna_call_id": "51977", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/09a0f7dc-92b8-49a2-bfaf-588c9ef4825d_0|orf_169-603", "protein_id": "09a0f7dc-92b8-49a2-bfaf-588c9ef4825d_0|orf_169-603", "rna_call_id": "51949", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0ad0f4a6-e936-4391-8b6f-ea6db5ced972_0|orf_100-510", "protein_id": "0ad0f4a6-e936-4391-8b6f-ea6db5ced972_0|orf_100-510", "rna_call_id": "52208", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728", "protein_id": "0b4a1144-0764-4e23-aed2-d0604c0fa81c_0|orf_111-728", "rna_call_id": "51691", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1634caa5-09e3-4e97-bfa3-e117841b46cb_0|orf_869-1279", "protein_id": "1634caa5-09e3-4e97-bfa3-e117841b46cb_0|orf_869-1279", "rna_call_id": "50976", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/1ab3adf8-997a-4cde-99cd-443bc6098a00_0|orf_632-1042", "protein_id": "1ab3adf8-997a-4cde-99cd-443bc6098a00_0|orf_632-1042", "rna_call_id": "51191", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/25407472-da26-402c-8cf0-80451a3b83ea_0|orf_507-1517", "protein_id": "25407472-da26-402c-8cf0-80451a3b83ea_0|orf_507-1517", "rna_call_id": "50964", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/25c43666-0c33-4145-93b5-601a0c6b7fb7_0|orf_54-464", "protein_id": "25c43666-0c33-4145-93b5-601a0c6b7fb7_0|orf_54-464", "rna_call_id": "52274", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/301ec41a-67f8-435f-b167-5fa4e1ad1c72_0|orf_109-519", "protein_id": "301ec41a-67f8-435f-b167-5fa4e1ad1c72_0|orf_109-519", "rna_call_id": "52148", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3c09be9b-a2b8-4747-b58d-b45bd7f2800a_0|orf_146-556", "protein_id": "3c09be9b-a2b8-4747-b58d-b45bd7f2800a_0|orf_146-556", "rna_call_id": "51991", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_127-1137", "protein_id": "3ef6baba-5c11-4d0f-b9f9-7183ff265d0c_0|orf_127-1137", "rna_call_id": "51110", "variant_amino_acid_start": 201 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/41c5a9ac-7960-45fc-bad8-d06cab26045f_0|orf_80-484", "protein_id": "41c5a9ac-7960-45fc-bad8-d06cab26045f_0|orf_80-484", "rna_call_id": "52240", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685", "protein_id": "48508880-22fb-4c4f-92b9-ad600381322a_0|orf_68-685", "rna_call_id": "51677", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4c67fcac-f1a2-4e7e-b224-b10e03aa46f4_0|orf_81-230", "protein_id": "4c67fcac-f1a2-4e7e-b224-b10e03aa46f4_0|orf_81-230", "rna_call_id": "52225", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/53da64e5-242b-4770-94f7-71f042165aff_0|orf_113-523", "protein_id": "53da64e5-242b-4770-94f7-71f042165aff_0|orf_113-523", "rna_call_id": "52137", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-682", "protein_id": "70711d0f-1a17-4ffb-a96b-de1d89d4ed4d_0|orf_53-682", "rna_call_id": "51776", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/730fe512-f7c4-4949-9ca6-45553f6a7944_0|orf_124-342", "protein_id": "730fe512-f7c4-4949-9ca6-45553f6a7944_0|orf_124-342", "rna_call_id": "52049", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680", "protein_id": "84e3a9ee-6473-466c-a645-d0bacc2da527_0|orf_63-680", "rna_call_id": "51761", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/947c6cc6-7a2c-4a40-8142-01a8fc686c9a_0|orf_29-439", "protein_id": "947c6cc6-7a2c-4a40-8142-01a8fc686c9a_0|orf_29-439", "rna_call_id": "52298", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9ae25983-2454-4d7b-a688-df2c544d7f5e_0|orf_748-1158", "protein_id": "9ae25983-2454-4d7b-a688-df2c544d7f5e_0|orf_748-1158", "rna_call_id": "51102", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9b955873-1b39-4396-9346-e9f4d71d1e02_0|orf_57-467", "protein_id": "9b955873-1b39-4396-9346-e9f4d71d1e02_0|orf_57-467", "rna_call_id": "52269", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291", "protein_id": "a6c8e4c2-e5cd-4410-8b5f-e8ac2166fa69_0|orf_695-1291", "rna_call_id": "51087", "variant_amino_acid_start": 63 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/aaa4e19c-8359-4ef0-b65e-342bd8bf3235_0|orf_366-776", "protein_id": "aaa4e19c-8359-4ef0-b65e-342bd8bf3235_0|orf_366-776", "rna_call_id": "51625", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b0884250-7f95-40e9-bfd6-fde0ff6a6806_0|orf_368-778", "protein_id": "b0884250-7f95-40e9-bfd6-fde0ff6a6806_0|orf_368-778", "rna_call_id": "51616", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bad4d685-5e8c-4bc2-a995-44e2edd38aa8_0|orf_147-557", "protein_id": "bad4d685-5e8c-4bc2-a995-44e2edd38aa8_0|orf_147-557", "rna_call_id": "51975", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668", "protein_id": "bc4d659b-92dc-44f1-a9da-092df278eb5a_0|orf_51-668", "rna_call_id": "51823", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bf52980e-e6de-4bc9-8b9d-9c142423e540_0|orf_74-484", "protein_id": "bf52980e-e6de-4bc9-8b9d-9c142423e540_0|orf_74-484", "rna_call_id": "52247", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_226-1203", "protein_id": "bf597e11-6988-4d88-ab6d-314387e9e0f3_0|orf_226-1203", "rna_call_id": "51020", "variant_amino_acid_start": 190 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c1736fa2-1a31-4bef-8df2-8615fcc32fb1_0|orf_84-632", "protein_id": "c1736fa2-1a31-4bef-8df2-8615fcc32fb1_0|orf_84-632", "rna_call_id": "51726", "variant_amino_acid_start": 121 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c2650bc4-7477-4aa0-951a-2130cb92fbcd_0|orf_154-564", "protein_id": "c2650bc4-7477-4aa0-951a-2130cb92fbcd_0|orf_154-564", "rna_call_id": "51964", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ca5f972d-de5f-49b2-bb94-19e6e5a6b00e_0|orf_7-438", "protein_id": "ca5f972d-de5f-49b2-bb94-19e6e5a6b00e_0|orf_7-438", "rna_call_id": "51428", "variant_amino_acid_start": 144 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-741", "protein_id": "d0ae35cf-72bc-4b5b-80e6-57408c6fdcb1_0|orf_91-741", "rna_call_id": "51563", "variant_amino_acid_start": 78 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dc8eb000-4a0e-48bf-a3c6-a9cc4a7e54d7_0|orf_359-679", "protein_id": "dc8eb000-4a0e-48bf-a3c6-a9cc4a7e54d7_0|orf_359-679", "rna_call_id": "51645", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666", "protein_id": "dfd1f482-2676-4a7b-9bca-ee242928b8fc_0|orf_49-666", "rna_call_id": "51828", "variant_amino_acid_start": 70 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_2433-4211", "protein_id": "e48dff3a-8152-4d0f-a83e-804f983c5da5_0|orf_2433-4211", "rna_call_id": "50806", "variant_amino_acid_start": 511 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_171-785", "protein_id": "f815a837-a5f4-49bf-a978-32d0d82c79c7_0|orf_171-785", "rna_call_id": "51603", "variant_amino_acid_start": 69 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fb7475dc-637f-4ba5-ad59-682d012cdea2_0|orf_30-440", "protein_id": "fb7475dc-637f-4ba5-ad59-682d012cdea2_0|orf_30-440", "rna_call_id": "52309", "variant_amino_acid_start": 1 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fc973578-fb89-458e-91a5-c812a90561a5_0|orf_135-545", "protein_id": "fc973578-fb89-458e-91a5-c812a90561a5_0|orf_135-545", "rna_call_id": "52026", "variant_amino_acid_start": 1 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/bea964e1-5530-44f2-b72e-0b140fd16f9c_0|orf_96-506", "protein_id": "bea964e1-5530-44f2-b72e-0b140fd16f9c_0|orf_96-506", "rna_call_id": "58062", "variant_amino_acid_start": 1 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/f4f1fe82-2734-437e-8372-e1f5bdec2b9f_0|orf_69-989", "protein_id": "f4f1fe82-2734-437e-8372-e1f5bdec2b9f_0|orf_69-989", "rna_call_id": "57862", "variant_amino_acid_start": 201 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 4 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 2 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 2 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 5 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 5 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 48 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 49 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 2 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 334, "alt_reads": 0, "total_reads": 334, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 110, "alt_reads": 0, "total_reads": 110, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 231, "alt_reads": 9, "total_reads": 240, "vaf": 0.0375, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 99, "alt_reads": 0, "total_reads": 99, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 231, "alt_reads": 8, "total_reads": 239, "vaf": 0.0335, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 19, "alt_reads": 1, "total_reads": 20, "vaf": 0.05, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 27, "alt_reads": 1, "total_reads": 28, "vaf": 0.0357, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 18, "alt_reads": 1, "total_reads": 19, "vaf": 0.0526, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 12, "alt_reads": 0, "total_reads": 12, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 43, "alt_reads": 22, "total_reads": 65, "vaf": 0.3385, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 16, "alt_reads": 1, "total_reads": 17, "vaf": 0.0588, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 9, "alt_reads": 0, "total_reads": 9, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 87, "alt_reads": 4, "total_reads": 92, "vaf": 0.0435, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 95, "alt_reads": 49, "total_reads": 144, "vaf": 0.3403, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 28, "alt_reads": 2, "total_reads": 30, "vaf": 0.0667, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 49, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 4, "category": "multiple", "sid_alt_reads": 4, "exacto_raw_rnas": 4 }, "T2-ONT": { "max_alt_reads": 49, "category": "multiple", "sid_alt_reads": 49, "exacto_raw_rnas": 49 }, "T3-ONT": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": 2, "exacto_raw_rnas": 2 }, "T1-PacBio": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 2 }, "T2-ILMN": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "CDC40-chr6-110228838", "gene": "CDC40", "chrom": "chr6", "pos": 110228838, "ref": "G", "alt": "C", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Trp475Ser", "consequence": "missense_variant", "vaccines": [ "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "CDC40-chr6-110228838.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 10, "sequence": "EPSMHSMPAVTLSPNGKSLACQSMDNQILIF", "scoring_region": { "sequence": "EPSMHSMPAVTLSPNGKSLACQSMDNQILIF", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1132", "protein_id": "168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1132", "rna_call_id": "13200", "amino_acid_starts": [ 213 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1eea4094-d908-4653-96a0-4f5b0e5dda35_0|orf_154-546", "protein_id": "1eea4094-d908-4653-96a0-4f5b0e5dda35_0|orf_154-546", "rna_call_id": "13417", "amino_acid_starts": [ 64 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-1112", "protein_id": "357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-1112", "rna_call_id": "13225", "amino_acid_starts": [ 213 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_31-588", "protein_id": "39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_31-588", "rna_call_id": "13487", "amino_acid_starts": [ 64 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_63-1046", "protein_id": "44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_63-1046", "rna_call_id": "13258", "amino_acid_starts": [ 213 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "protein_id": "57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "rna_call_id": "13532", "amino_acid_starts": [ 18 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-711", "protein_id": "8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-711", "rna_call_id": "13413", "amino_acid_starts": [ 64 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c136f77c-47de-463a-a426-5f3f6cc0770f_0|orf_670-1758", "protein_id": "c136f77c-47de-463a-a426-5f3f6cc0770f_0|orf_670-1758", "rna_call_id": "12858", "amino_acid_starts": [ 241 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_44-1783", "protein_id": "dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_44-1783", "rna_call_id": "12793", "amino_acid_starts": [ 458 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_46-1785", "protein_id": "fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_46-1785", "rna_call_id": "12798", "amino_acid_starts": [ 458 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "protein_id": "fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "rna_call_id": "13146", "amino_acid_starts": [ 213 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1033", "protein_id": "168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1033", "rna_call_id": "43894", "amino_acid_starts": [ 213 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/53ae28fa-91a7-4e4a-b0f8-cfb837373bcb_0|orf_60-617", "protein_id": "53ae28fa-91a7-4e4a-b0f8-cfb837373bcb_0|orf_60-617", "rna_call_id": "44321", "amino_acid_starts": [ 150 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "protein_id": "57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "rna_call_id": "44723", "amino_acid_starts": [ 18 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-633", "protein_id": "8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-633", "rna_call_id": "44498", "amino_acid_starts": [ 64 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_693-1781", "protein_id": "dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_693-1781", "rna_call_id": "42168", "amino_acid_starts": [ 241 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_153-1784", "protein_id": "fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_153-1784", "rna_call_id": "42188", "amino_acid_starts": [ 422 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "protein_id": "fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "rna_call_id": "43612", "amino_acid_starts": [ 213 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0ebbb725-1f58-42e7-a553-d0931d0105d2_0|orf_88-645", "protein_id": "0ebbb725-1f58-42e7-a553-d0931d0105d2_0|orf_88-645", "rna_call_id": "56790", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/14a13079-f8eb-4c2f-97b6-453b45a1f2b7_0|orf_244-801", "protein_id": "14a13079-f8eb-4c2f-97b6-453b45a1f2b7_0|orf_244-801", "rna_call_id": "56534", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2cd6d958-b8ac-4b12-85ab-7e1dc561c623_0|orf_120-677", "protein_id": "2cd6d958-b8ac-4b12-85ab-7e1dc561c623_0|orf_120-677", "rna_call_id": "56698", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/41baaa12-cb7b-487b-b104-91ab6777f559_0|orf_120-692", "protein_id": "41baaa12-cb7b-487b-b104-91ab6777f559_0|orf_120-692", "rna_call_id": "56758", "amino_acid_starts": [ 64 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9b9d1576-655e-4db3-ba56-c72bd41fa852_0|orf_65-1069", "protein_id": "9b9d1576-655e-4db3-ba56-c72bd41fa852_0|orf_65-1069", "rna_call_id": "56046", "amino_acid_starts": [ 213 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ea0a085c-50e4-428d-8648-0de8c915512b_0|orf_22-738", "protein_id": "ea0a085c-50e4-428d-8648-0de8c915512b_0|orf_22-738", "rna_call_id": "56373", "amino_acid_starts": [ 190 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f27bee82-0344-4c46-9370-4bf3c6f460bb_0|orf_3-896", "protein_id": "f27bee82-0344-4c46-9370-4bf3c6f460bb_0|orf_3-896", "rna_call_id": "56453", "amino_acid_starts": [ 176 ] } ] }, { "peptide_id": "CDC40-chr6-110228838.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "TLSPNGKSL", "scoring_region": { "sequence": "TLSPNGKSL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/3315|orf_16-375", "protein_id": "3315|orf_16-375", "rna_call_id": "7510", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-547", "protein_id": "01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-547", "rna_call_id": "13503", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1132", "protein_id": "168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1132", "rna_call_id": "13200", "amino_acid_starts": [ 223 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1eea4094-d908-4653-96a0-4f5b0e5dda35_0|orf_154-546", "protein_id": "1eea4094-d908-4653-96a0-4f5b0e5dda35_0|orf_154-546", "rna_call_id": "13417", "amino_acid_starts": [ 74 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-1112", "protein_id": "357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-1112", "rna_call_id": "13225", "amino_acid_starts": [ 223 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_31-588", "protein_id": "39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_31-588", "rna_call_id": "13487", "amino_acid_starts": [ 74 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_63-1046", "protein_id": "44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_63-1046", "rna_call_id": "13258", "amino_acid_starts": [ 223 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "protein_id": "57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "rna_call_id": "13532", "amino_acid_starts": [ 28 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/670ea9cd-c869-4473-8eb4-505573f2d773_0|orf_91-450", "protein_id": "670ea9cd-c869-4473-8eb4-505573f2d773_0|orf_91-450", "rna_call_id": "13519", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-379", "protein_id": "88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-379", "rna_call_id": "13556", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-711", "protein_id": "8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-711", "rna_call_id": "13413", "amino_acid_starts": [ 74 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "protein_id": "a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "rna_call_id": "13560", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c136f77c-47de-463a-a426-5f3f6cc0770f_0|orf_670-1758", "protein_id": "c136f77c-47de-463a-a426-5f3f6cc0770f_0|orf_670-1758", "rna_call_id": "12858", "amino_acid_starts": [ 251 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_44-1783", "protein_id": "dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_44-1783", "rna_call_id": "12793", "amino_acid_starts": [ 468 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_46-1785", "protein_id": "fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_46-1785", "rna_call_id": "12798", "amino_acid_starts": [ 468 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "protein_id": "fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "rna_call_id": "13146", "amino_acid_starts": [ 223 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-499", "protein_id": "01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-499", "rna_call_id": "44626", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1033", "protein_id": "168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1033", "rna_call_id": "43894", "amino_acid_starts": [ 223 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_228-488", "protein_id": "39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_228-488", "rna_call_id": "44605", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_708-1046", "protein_id": "44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_708-1046", "rna_call_id": "44065", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/53ae28fa-91a7-4e4a-b0f8-cfb837373bcb_0|orf_60-617", "protein_id": "53ae28fa-91a7-4e4a-b0f8-cfb837373bcb_0|orf_60-617", "rna_call_id": "44321", "amino_acid_starts": [ 160 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "protein_id": "57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "rna_call_id": "44723", "amino_acid_starts": [ 28 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-340", "protein_id": "88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-340", "rna_call_id": "44763", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-633", "protein_id": "8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-633", "rna_call_id": "44498", "amino_acid_starts": [ 74 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "protein_id": "a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "rna_call_id": "44769", "amino_acid_starts": [ 8 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_693-1781", "protein_id": "dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_693-1781", "rna_call_id": "42168", "amino_acid_starts": [ 251 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_153-1784", "protein_id": "fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_153-1784", "rna_call_id": "42188", "amino_acid_starts": [ 432 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "protein_id": "fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "rna_call_id": "43612", "amino_acid_starts": [ 223 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0ebbb725-1f58-42e7-a553-d0931d0105d2_0|orf_88-645", "protein_id": "0ebbb725-1f58-42e7-a553-d0931d0105d2_0|orf_88-645", "rna_call_id": "56790", "amino_acid_starts": [ 74 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/14a13079-f8eb-4c2f-97b6-453b45a1f2b7_0|orf_244-801", "protein_id": "14a13079-f8eb-4c2f-97b6-453b45a1f2b7_0|orf_244-801", "rna_call_id": "56534", "amino_acid_starts": [ 74 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2cd6d958-b8ac-4b12-85ab-7e1dc561c623_0|orf_120-677", "protein_id": "2cd6d958-b8ac-4b12-85ab-7e1dc561c623_0|orf_120-677", "rna_call_id": "56698", "amino_acid_starts": [ 74 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/41baaa12-cb7b-487b-b104-91ab6777f559_0|orf_120-692", "protein_id": "41baaa12-cb7b-487b-b104-91ab6777f559_0|orf_120-692", "rna_call_id": "56758", "amino_acid_starts": [ 74 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/62931211-fb66-4112-8624-a4a4daa671b1_0|orf_102-461", "protein_id": "62931211-fb66-4112-8624-a4a4daa671b1_0|orf_102-461", "rna_call_id": "56973", "amino_acid_starts": [ 8 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9b9d1576-655e-4db3-ba56-c72bd41fa852_0|orf_65-1069", "protein_id": "9b9d1576-655e-4db3-ba56-c72bd41fa852_0|orf_65-1069", "rna_call_id": "56046", "amino_acid_starts": [ 223 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ea0a085c-50e4-428d-8648-0de8c915512b_0|orf_22-738", "protein_id": "ea0a085c-50e4-428d-8648-0de8c915512b_0|orf_22-738", "rna_call_id": "56373", "amino_acid_starts": [ 200 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f27bee82-0344-4c46-9370-4bf3c6f460bb_0|orf_3-896", "protein_id": "f27bee82-0344-4c46-9370-4bf3c6f460bb_0|orf_3-896", "rna_call_id": "56453", "amino_acid_starts": [ 186 ] } ] }, { "peptide_id": "CDC40-chr6-110228838.peptide-3", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 6, "sequence": "HSMPAVTLSPNGKSLACQSMDNQKK", "scoring_region": { "sequence": "HSMPAVTLSPNGKSLACQSMDNQ", "start": 0, "end": 23, "terminal_tags": [ { "terminus": "C", "start": 23, "end": 25, "sequence": "KK" } ] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/3315|orf_16-375", "protein_id": "3315|orf_16-375", "rna_call_id": "7510", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-547", "protein_id": "01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-547", "rna_call_id": "13503", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1132", "protein_id": "168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1132", "rna_call_id": "13200", "amino_acid_starts": [ 217 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1eea4094-d908-4653-96a0-4f5b0e5dda35_0|orf_154-546", "protein_id": "1eea4094-d908-4653-96a0-4f5b0e5dda35_0|orf_154-546", "rna_call_id": "13417", "amino_acid_starts": [ 68 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-1112", "protein_id": "357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-1112", "rna_call_id": "13225", "amino_acid_starts": [ 217 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_31-588", "protein_id": "39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_31-588", "rna_call_id": "13487", "amino_acid_starts": [ 68 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_63-1046", "protein_id": "44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_63-1046", "rna_call_id": "13258", "amino_acid_starts": [ 217 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "protein_id": "57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "rna_call_id": "13532", "amino_acid_starts": [ 22 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/670ea9cd-c869-4473-8eb4-505573f2d773_0|orf_91-450", "protein_id": "670ea9cd-c869-4473-8eb4-505573f2d773_0|orf_91-450", "rna_call_id": "13519", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-379", "protein_id": "88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-379", "rna_call_id": "13556", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-711", "protein_id": "8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-711", "rna_call_id": "13413", "amino_acid_starts": [ 68 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "protein_id": "a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "rna_call_id": "13560", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c136f77c-47de-463a-a426-5f3f6cc0770f_0|orf_670-1758", "protein_id": "c136f77c-47de-463a-a426-5f3f6cc0770f_0|orf_670-1758", "rna_call_id": "12858", "amino_acid_starts": [ 245 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_44-1783", "protein_id": "dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_44-1783", "rna_call_id": "12793", "amino_acid_starts": [ 462 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_46-1785", "protein_id": "fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_46-1785", "rna_call_id": "12798", "amino_acid_starts": [ 462 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "protein_id": "fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "rna_call_id": "13146", "amino_acid_starts": [ 217 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-499", "protein_id": "01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-499", "rna_call_id": "44626", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1033", "protein_id": "168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1033", "rna_call_id": "43894", "amino_acid_starts": [ 217 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_228-488", "protein_id": "39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_228-488", "rna_call_id": "44605", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_708-1046", "protein_id": "44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_708-1046", "rna_call_id": "44065", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/53ae28fa-91a7-4e4a-b0f8-cfb837373bcb_0|orf_60-617", "protein_id": "53ae28fa-91a7-4e4a-b0f8-cfb837373bcb_0|orf_60-617", "rna_call_id": "44321", "amino_acid_starts": [ 154 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "protein_id": "57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "rna_call_id": "44723", "amino_acid_starts": [ 22 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-340", "protein_id": "88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-340", "rna_call_id": "44763", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-633", "protein_id": "8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-633", "rna_call_id": "44498", "amino_acid_starts": [ 68 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "protein_id": "a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "rna_call_id": "44769", "amino_acid_starts": [ 2 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_693-1781", "protein_id": "dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_693-1781", "rna_call_id": "42168", "amino_acid_starts": [ 245 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_153-1784", "protein_id": "fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_153-1784", "rna_call_id": "42188", "amino_acid_starts": [ 426 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "protein_id": "fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "rna_call_id": "43612", "amino_acid_starts": [ 217 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0ebbb725-1f58-42e7-a553-d0931d0105d2_0|orf_88-645", "protein_id": "0ebbb725-1f58-42e7-a553-d0931d0105d2_0|orf_88-645", "rna_call_id": "56790", "amino_acid_starts": [ 68 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/14a13079-f8eb-4c2f-97b6-453b45a1f2b7_0|orf_244-801", "protein_id": "14a13079-f8eb-4c2f-97b6-453b45a1f2b7_0|orf_244-801", "rna_call_id": "56534", "amino_acid_starts": [ 68 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2cd6d958-b8ac-4b12-85ab-7e1dc561c623_0|orf_120-677", "protein_id": "2cd6d958-b8ac-4b12-85ab-7e1dc561c623_0|orf_120-677", "rna_call_id": "56698", "amino_acid_starts": [ 68 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/41baaa12-cb7b-487b-b104-91ab6777f559_0|orf_120-692", "protein_id": "41baaa12-cb7b-487b-b104-91ab6777f559_0|orf_120-692", "rna_call_id": "56758", "amino_acid_starts": [ 68 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/62931211-fb66-4112-8624-a4a4daa671b1_0|orf_102-461", "protein_id": "62931211-fb66-4112-8624-a4a4daa671b1_0|orf_102-461", "rna_call_id": "56973", "amino_acid_starts": [ 2 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9b9d1576-655e-4db3-ba56-c72bd41fa852_0|orf_65-1069", "protein_id": "9b9d1576-655e-4db3-ba56-c72bd41fa852_0|orf_65-1069", "rna_call_id": "56046", "amino_acid_starts": [ 217 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ea0a085c-50e4-428d-8648-0de8c915512b_0|orf_22-738", "protein_id": "ea0a085c-50e4-428d-8648-0de8c915512b_0|orf_22-738", "rna_call_id": "56373", "amino_acid_starts": [ 194 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f27bee82-0344-4c46-9370-4bf3c6f460bb_0|orf_3-896", "protein_id": "f27bee82-0344-4c46-9370-4bf3c6f460bb_0|orf_3-896", "rna_call_id": "56453", "amino_acid_starts": [ 180 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/3315|orf_16-375", "protein_id": "3315|orf_16-375", "rna_call_id": "7510", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-547", "protein_id": "01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-547", "rna_call_id": "13503", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1132", "protein_id": "168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1132", "rna_call_id": "13200", "variant_amino_acid_start": 230 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1eea4094-d908-4653-96a0-4f5b0e5dda35_0|orf_154-546", "protein_id": "1eea4094-d908-4653-96a0-4f5b0e5dda35_0|orf_154-546", "rna_call_id": "13417", "variant_amino_acid_start": 81 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-1112", "protein_id": "357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-1112", "rna_call_id": "13225", "variant_amino_acid_start": 230 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_31-588", "protein_id": "39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_31-588", "rna_call_id": "13487", "variant_amino_acid_start": 81 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_63-1046", "protein_id": "44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_63-1046", "rna_call_id": "13258", "variant_amino_acid_start": 230 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "protein_id": "57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "rna_call_id": "13532", "variant_amino_acid_start": 35 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/670ea9cd-c869-4473-8eb4-505573f2d773_0|orf_91-450", "protein_id": "670ea9cd-c869-4473-8eb4-505573f2d773_0|orf_91-450", "rna_call_id": "13519", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-379", "protein_id": "88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-379", "rna_call_id": "13556", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/89769e07-e24c-42c0-a13b-84b9c6d7ca7d_0|orf_94-240", "protein_id": "89769e07-e24c-42c0-a13b-84b9c6d7ca7d_0|orf_94-240", "rna_call_id": "13515", "variant_amino_acid_start": 29 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-711", "protein_id": "8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-711", "rna_call_id": "13413", "variant_amino_acid_start": 81 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "protein_id": "a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "rna_call_id": "13560", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c136f77c-47de-463a-a426-5f3f6cc0770f_0|orf_670-1758", "protein_id": "c136f77c-47de-463a-a426-5f3f6cc0770f_0|orf_670-1758", "rna_call_id": "12858", "variant_amino_acid_start": 258 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_44-1783", "protein_id": "dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_44-1783", "rna_call_id": "12793", "variant_amino_acid_start": 475 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_46-1785", "protein_id": "fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_46-1785", "rna_call_id": "12798", "variant_amino_acid_start": 475 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "protein_id": "fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "rna_call_id": "13146", "variant_amino_acid_start": 230 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-499", "protein_id": "01bd3673-f94c-41f7-afcd-7aae747e0d6f_0|orf_188-499", "rna_call_id": "44626", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1033", "protein_id": "168fa478-0743-42c8-978a-5690e105b56c_0|orf_128-1033", "rna_call_id": "43894", "variant_amino_acid_start": 230 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-800", "protein_id": "357f0cb4-8065-47e8-9b17-ab1d64093a5a_0|orf_108-800", "rna_call_id": "43951", "variant_amino_acid_start": 230 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_228-488", "protein_id": "39767e06-cca5-4769-9623-2a0a4c49427e_0|orf_228-488", "rna_call_id": "44605", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3b328881-f383-4456-bed7-7f12d0a59c31_0|orf_670-1449", "protein_id": "3b328881-f383-4456-bed7-7f12d0a59c31_0|orf_670-1449", "rna_call_id": "42520", "variant_amino_acid_start": 259 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_708-1046", "protein_id": "44a16fb8-2402-4e77-9add-75bf1b288248_0|orf_708-1046", "rna_call_id": "44065", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/53ae28fa-91a7-4e4a-b0f8-cfb837373bcb_0|orf_60-617", "protein_id": "53ae28fa-91a7-4e4a-b0f8-cfb837373bcb_0|orf_60-617", "rna_call_id": "44321", "variant_amino_acid_start": 167 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "protein_id": "57b7d567-039a-4bee-bb9a-cb1fa5a89155_0|orf_44-463", "rna_call_id": "44723", "variant_amino_acid_start": 35 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-340", "protein_id": "88cbd5e0-46bc-4d5c-9c1b-095a2bb254aa_0|orf_20-340", "rna_call_id": "44763", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/89769e07-e24c-42c0-a13b-84b9c6d7ca7d_0|orf_94-240", "protein_id": "89769e07-e24c-42c0-a13b-84b9c6d7ca7d_0|orf_94-240", "rna_call_id": "44698", "variant_amino_acid_start": 29 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-633", "protein_id": "8cdfc971-3876-4acd-a1d7-a0dcd91190fb_0|orf_154-633", "rna_call_id": "44498", "variant_amino_acid_start": 81 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "protein_id": "a336a9c1-ca9f-4fe7-be9e-0e6499f2bb76_0|orf_17-376", "rna_call_id": "44769", "variant_amino_acid_start": 15 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_693-1781", "protein_id": "dbbacfd5-ec0f-4511-b84e-2d9a07b0e94f_0|orf_693-1781", "rna_call_id": "42168", "variant_amino_acid_start": 258 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_153-1784", "protein_id": "fb1cfaf9-bbe5-4bb7-bd50-07b6a131d462_0|orf_153-1784", "rna_call_id": "42188", "variant_amino_acid_start": 439 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "protein_id": "fe677c24-0375-4fca-a42e-792d0b09f405_0|orf_213-1217", "rna_call_id": "43612", "variant_amino_acid_start": 230 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4761662|orf_811-1314", "protein_id": "molecule/4761662|orf_811-1314", "rna_call_id": "6566", "variant_amino_acid_start": 81 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0ebbb725-1f58-42e7-a553-d0931d0105d2_0|orf_88-645", "protein_id": "0ebbb725-1f58-42e7-a553-d0931d0105d2_0|orf_88-645", "rna_call_id": "56790", "variant_amino_acid_start": 81 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/14a13079-f8eb-4c2f-97b6-453b45a1f2b7_0|orf_244-801", "protein_id": "14a13079-f8eb-4c2f-97b6-453b45a1f2b7_0|orf_244-801", "rna_call_id": "56534", "variant_amino_acid_start": 81 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2ac15c58-ca71-48b1-a4ac-4ed3040cd9da_0|orf_138-542", "protein_id": "2ac15c58-ca71-48b1-a4ac-4ed3040cd9da_0|orf_138-542", "rna_call_id": "56912", "variant_amino_acid_start": 30 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2cd6d958-b8ac-4b12-85ab-7e1dc561c623_0|orf_120-677", "protein_id": "2cd6d958-b8ac-4b12-85ab-7e1dc561c623_0|orf_120-677", "rna_call_id": "56698", "variant_amino_acid_start": 81 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/41baaa12-cb7b-487b-b104-91ab6777f559_0|orf_120-692", "protein_id": "41baaa12-cb7b-487b-b104-91ab6777f559_0|orf_120-692", "rna_call_id": "56758", "variant_amino_acid_start": 81 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/62931211-fb66-4112-8624-a4a4daa671b1_0|orf_102-461", "protein_id": "62931211-fb66-4112-8624-a4a4daa671b1_0|orf_102-461", "rna_call_id": "56973", "variant_amino_acid_start": 15 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9b9d1576-655e-4db3-ba56-c72bd41fa852_0|orf_65-1069", "protein_id": "9b9d1576-655e-4db3-ba56-c72bd41fa852_0|orf_65-1069", "rna_call_id": "56046", "variant_amino_acid_start": 230 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ea0a085c-50e4-428d-8648-0de8c915512b_0|orf_22-738", "protein_id": "ea0a085c-50e4-428d-8648-0de8c915512b_0|orf_22-738", "rna_call_id": "56373", "variant_amino_acid_start": 207 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f27bee82-0344-4c46-9370-4bf3c6f460bb_0|orf_3-896", "protein_id": "f27bee82-0344-4c46-9370-4bf3c6f460bb_0|orf_3-896", "rna_call_id": "56453", "variant_amino_acid_start": 193 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 40 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 41 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 6 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 40 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 2 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 220, "alt_reads": 0, "total_reads": 220, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 295, "alt_reads": 0, "total_reads": 295, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 235, "alt_reads": 68, "total_reads": 304, "vaf": 0.2237, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 31, "alt_reads": 0, "total_reads": 32, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 231, "alt_reads": 66, "total_reads": 298, "vaf": 0.2215, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 48, "alt_reads": 6, "total_reads": 54, "vaf": 0.1111, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 99, "alt_reads": 12, "total_reads": 111, "vaf": 0.1081, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 49, "alt_reads": 6, "total_reads": 55, "vaf": 0.1091, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 22, "alt_reads": 4, "total_reads": 26, "vaf": 0.1538, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 51, "alt_reads": 3, "total_reads": 54, "vaf": 0.0556, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 49, "alt_reads": 0, "total_reads": 49, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 54, "alt_reads": 0, "total_reads": 54, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 243, "alt_reads": 41, "total_reads": 285, "vaf": 0.1439, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 503, "alt_reads": 41, "total_reads": 544, "vaf": 0.0754, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 675, "alt_reads": 2, "total_reads": 677, "vaf": 0.003, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 41, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 41, "category": "multiple", "sid_alt_reads": 41, "exacto_raw_rnas": 41 }, "T2-ONT": { "max_alt_reads": 41, "category": "multiple", "sid_alt_reads": 41, "exacto_raw_rnas": 40 }, "T3-ONT": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": 2, "exacto_raw_rnas": 2 }, "T1-PacBio": { "max_alt_reads": 6, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 6 }, "T2-ILMN": { "max_alt_reads": 12, "category": "multiple", "sid_alt_reads": 12, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "TECPR1-chr7-98241127", "gene": "TECPR1", "chrom": "chr7", "pos": 98241127, "ref": "TG", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Thr259fs", "consequence": "frameshift_variant", "vaccines": [ "CeGaT", "JLF V1", "JLF V2", "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 75, "sequence": "VQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGRCGSEEASTLTIPAAPVGLRWLVR", "scoring_region": { "sequence": "VQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGRCGSEEASTLTIPAAPVGLRWLVR", "start": 0, "end": 89, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "rna_call_id": "13929", "amino_acid_starts": [ 125 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "rna_call_id": "45551", "amino_acid_starts": [ 166 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/812550|orf_775-1416", "protein_id": "molecule/812550|orf_775-1416", "rna_call_id": "6615", "amino_acid_starts": [ 125 ] } ] }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "TIPAAPVGL", "scoring_region": { "sequence": "TIPAAPVGL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "rna_call_id": "13929", "amino_acid_starts": [ 200 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "rna_call_id": "45551", "amino_acid_starts": [ 241 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/812550|orf_775-1416", "protein_id": "molecule/812550|orf_775-1416", "rna_call_id": "6615", "amino_acid_starts": [ 200 ] } ] }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038.MT.38.TECPR1.1", "pool": "L2", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2023-09-22", "experiment": "UNC Immune Monitoring (Spring, 2024)", "outcomes": "Observed reactivity to MAP2 / TECPR1; no sequencing performed", "pbmcs_label": "(2023/09/22, 2023/11/28)", "peptide_id": "JLF-100-038R.MT.38.TECPR1.1", "pool": "NA", "result": "Positive (Weak)", "summary": "Whole PBMCs stimulated with 9 pooled CSBio long peptides. ELISPOT performed with individual peptide stimulation." }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.38.TECPR1.1", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V3", "JLF V2", "JLF V1" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 8, "sequence": "GSEEASTLTIPAAPVGLRWLVR", "scoring_region": { "sequence": "GSEEASTLTIPAAPVGLRWLVR", "start": 0, "end": 22, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "rna_call_id": "13929", "amino_acid_starts": [ 192 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "rna_call_id": "45551", "amino_acid_starts": [ 233 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/812550|orf_775-1416", "protein_id": "molecule/812550|orf_775-1416", "rna_call_id": "6615", "amino_acid_starts": [ 192 ] } ] }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038.MT.38.TECPR1.2", "pool": "L2", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2023-09-22", "experiment": "UNC Immune Monitoring (Spring, 2024)", "outcomes": "Observed reactivity to MAP2 / TECPR1; no sequencing performed", "pbmcs_label": "(2023/09/22, 2023/11/28)", "peptide_id": "JLF-100-038.MT.38.TECPR1.2", "pool": "NA", "result": "Negative", "summary": "Whole PBMCs stimulated with 9 pooled CSBio long peptides. ELISPOT performed with individual peptide stimulation." }, { "additional_testing": "", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038.MT.38.TECPR1.2", "pool": "NA", "result": "Positive (Weak)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V2", "JLF V1" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "TSRWESAWSGLSPRTGR", "scoring_region": { "sequence": "TSRWESAWSGLSPRTGR", "start": 0, "end": 17, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/01332cce-c721-44a1-8a88-67e0b193568c_0|orf_235-1170", "protein_id": "01332cce-c721-44a1-8a88-67e0b193568c_0|orf_235-1170", "rna_call_id": "13984", "amino_acid_starts": [ 295 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "rna_call_id": "13929", "amino_acid_starts": [ 174 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "rna_call_id": "45551", "amino_acid_starts": [ 215 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/812550|orf_775-1416", "protein_id": "molecule/812550|orf_775-1416", "rna_call_id": "6615", "amino_acid_starts": [ 174 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "protein_id": "29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "rna_call_id": "20022", "amino_acid_starts": [ 126 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "protein_id": "29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "rna_call_id": "58448", "amino_acid_starts": [ 126 ] } ] }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "LWAHSGRDRPWSGKES", "scoring_region": { "sequence": "LWAHSGRDRPWSGKES", "start": 0, "end": 16, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/01332cce-c721-44a1-8a88-67e0b193568c_0|orf_235-1170", "protein_id": "01332cce-c721-44a1-8a88-67e0b193568c_0|orf_235-1170", "rna_call_id": "13984", "amino_acid_starts": [ 256 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "rna_call_id": "13929", "amino_acid_starts": [ 135 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "rna_call_id": "45551", "amino_acid_starts": [ 176 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/812550|orf_775-1416", "protein_id": "molecule/812550|orf_775-1416", "rna_call_id": "6615", "amino_acid_starts": [ 135 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "protein_id": "29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "rna_call_id": "20022", "amino_acid_starts": [ 48 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6cf3f2c7-6f03-4077-ab28-567c388c7969_0|orf_38-478", "protein_id": "6cf3f2c7-6f03-4077-ab28-567c388c7969_0|orf_38-478", "rna_call_id": "20029", "amino_acid_starts": [ 48 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "protein_id": "29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "rna_call_id": "58448", "amino_acid_starts": [ 48 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": null, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/01332cce-c721-44a1-8a88-67e0b193568c_0|orf_235-1170", "protein_id": "01332cce-c721-44a1-8a88-67e0b193568c_0|orf_235-1170", "rna_call_id": "13984", "variant_amino_acid_start": 258 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/578fad5e-8d0c-43c5-8bc7-0fdfaec3696a_0|orf_1400-1690", "protein_id": "578fad5e-8d0c-43c5-8bc7-0fdfaec3696a_0|orf_1400-1690", "rna_call_id": "14177", "variant_amino_acid_start": 50 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_776-1417", "rna_call_id": "13929", "variant_amino_acid_start": 137 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/578fad5e-8d0c-43c5-8bc7-0fdfaec3696a_0|orf_1400-1690", "protein_id": "578fad5e-8d0c-43c5-8bc7-0fdfaec3696a_0|orf_1400-1690", "rna_call_id": "45740", "variant_amino_acid_start": 50 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "protein_id": "8d26e645-4c07-4bc3-baf1-2be3897e90e2_0|orf_651-1415", "rna_call_id": "45551", "variant_amino_acid_start": 178 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6775392|orf_39-656", "protein_id": "molecule/6775392|orf_39-656", "rna_call_id": "4014", "variant_amino_acid_start": 160 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6775392|orf_39-656", "protein_id": "molecule/6775392|orf_39-656", "rna_call_id": "6625", "variant_amino_acid_start": 160 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/812550|orf_775-1416", "protein_id": "molecule/812550|orf_775-1416", "rna_call_id": "6615", "variant_amino_acid_start": 137 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "protein_id": "29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "rna_call_id": "20022", "variant_amino_acid_start": 50 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6cf3f2c7-6f03-4077-ab28-567c388c7969_0|orf_38-478", "protein_id": "6cf3f2c7-6f03-4077-ab28-567c388c7969_0|orf_38-478", "rna_call_id": "20029", "variant_amino_acid_start": 50 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "protein_id": "29cb7300-b57f-472c-a849-827a626b6e66_0|orf_256-684", "rna_call_id": "58448", "variant_amino_acid_start": 50 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/6cf3f2c7-6f03-4077-ab28-567c388c7969_0|orf_38-328", "protein_id": "6cf3f2c7-6f03-4077-ab28-567c388c7969_0|orf_38-328", "rna_call_id": "58457", "variant_amino_acid_start": 51 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/f44f3516-46c0-4466-96b7-4aa83d5f5fa7_0|orf_15-485", "protein_id": "f44f3516-46c0-4466-96b7-4aa83d5f5fa7_0|orf_15-485", "rna_call_id": "66820", "variant_amino_acid_start": 77 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 3 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 5 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 2 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 3 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 3 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 1 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 26, "alt_reads": 5, "total_reads": 31, "vaf": 0.1613, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 210, "alt_reads": 0, "total_reads": 215, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 29, "alt_reads": 3, "total_reads": 32, "vaf": 0.0938, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 27, "alt_reads": 1, "total_reads": 29, "vaf": 0.0345, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 28, "alt_reads": 3, "total_reads": 31, "vaf": 0.0968, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 88, "alt_reads": 9, "total_reads": 99, "vaf": 0.0909, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 195, "alt_reads": 25, "total_reads": 222, "vaf": 0.1126, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 89, "alt_reads": 9, "total_reads": 100, "vaf": 0.09, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 28, "alt_reads": 0, "total_reads": 28, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 27, "alt_reads": 1, "total_reads": 29, "vaf": 0.0345, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 5, "alt_reads": 0, "total_reads": 5, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 1, "alt_reads": 1, "total_reads": 2, "vaf": 0.5, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 46, "alt_reads": 5, "total_reads": 51, "vaf": 0.098, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 26, "alt_reads": 3, "total_reads": 29, "vaf": 0.1034, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 49, "alt_reads": 1, "total_reads": 50, "vaf": 0.02, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 25, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 5, "category": "multiple", "sid_alt_reads": 5, "exacto_raw_rnas": 5 }, "T2-ONT": { "max_alt_reads": 3, "category": "multiple", "sid_alt_reads": 3, "exacto_raw_rnas": 3 }, "T3-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T1-PacBio": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 2 }, "T2-ILMN": { "max_alt_reads": 25, "category": "multiple", "sid_alt_reads": 25, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "EXOC4-chr7-133274996", "gene": "EXOC4", "chrom": "chr7", "pos": 133274996, "ref": "G", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ser34Ile", "consequence": "missense_variant", "vaccines": [ "CeGaT", "JLF V2", "JLF V3" ], "published_vaccine_peptides": [ { "peptide_id": "EXOC4-chr7-133274996.peptide-1", "experiments": [ { "additional_testing": "Sent to Celldom", "date": "2023-09-22", "experiment": "PFO Lab 14-day stim, PFO-S18 (Spring, 2025)", "outcomes": "Identification of 2x TECPR1 SCT-binding TCR-Ts via Celldom", "pbmcs_label": "Sample #1: pre-vaccine PBMCs (2023/09/22) Sample #2: apheresis (2024/05/15) Sample #3: combined PBMCs (2024/07/16, 2024/08/03) Sample #4: PBMCs (2024/08/20) Sample #5: combined PBMCs (2024/10/10, 2024/11/21, 2024/12/13)", "peptide_id": "JLF-100-038R.MT.39.EXOC4", "pool": "L3", "result": "Positive", "summary": "Various peptide pools; CD8 T cells co-cultured with irradiated EBV-LCLs. ELISPOT and 10x single cell TCR sequencing" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038R.MT.39.EXOC4.1", "pool": "Pool 1", "result": "Positive (Weak)", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "", "date": "2024-05-15", "experiment": "PFO Lab ex vivo ELISPOT, PFO-S45 (Fall, 2025)", "outcomes": "ex vivo responses observed in pooled and invididual peptides (MAP2, DYNC1H1); classII blockade supports CD8 resposes", "pbmcs_label": "Apheresis (2024/05/15)", "peptide_id": "JLF-100-038R.MT.39.EXOC4.1", "pool": "", "result": "Positive (Weak)", "summary": "ex vivo ELISPOT optimizing detection of CD8 T cell responses" }, { "additional_testing": "Sent to MUSC for expansion", "date": "2024-05-15", "experiment": "UNC Immune Monitoring (Summer, 2024)", "outcomes": "26 TCRs extracted; 4 reactive to CSBio peptides (1x DYNC1H1, 3x EXOC4) via Class-II stimulation", "pbmcs_label": "Apheresis (2024/05/15), Whole PBMCs", "peptide_id": "JLF-100-038R.MT.39.EXOC4.1", "pool": "NA", "result": "Positive (Strong)", "summary": "Whole PBMCs individually stimulated with 15 CSBio long peptides. ELISPOT and 10x single cell TCR sequencing" } ], "in_vaccines": [ "JLF V3", "JLF V2" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "KKSVIRTLSTIDDVEDRENEKGR", "scoring_region": { "sequence": "SVIRTLSTIDDVEDRENEKGR", "start": 2, "end": 23, "terminal_tags": [ { "terminus": "N", "start": 0, "end": 2, "sequence": "KK" } ] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-908", "protein_id": "070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-908", "rna_call_id": "16157", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/12cf7430-2a65-4c0b-94fe-fd17a809eb2e_0|orf_29-1453", "protein_id": "12cf7430-2a65-4c0b-94fe-fd17a809eb2e_0|orf_29-1453", "rna_call_id": "14421", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "protein_id": "23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "rna_call_id": "14435", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2a0d9567-0e7c-4ad8-b739-87fbfac10422_0|orf_31-1455", "protein_id": "2a0d9567-0e7c-4ad8-b739-87fbfac10422_0|orf_31-1455", "rna_call_id": "14465", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3101801f-1f95-40e9-b6c6-2af1a3924314_0|orf_32-1456", "protein_id": "3101801f-1f95-40e9-b6c6-2af1a3924314_0|orf_32-1456", "rna_call_id": "16172", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39b9cf3d-1796-457c-975d-acde6b6222c1_0|orf_19-1800", "protein_id": "39b9cf3d-1796-457c-975d-acde6b6222c1_0|orf_19-1800", "rna_call_id": "15683", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3aac9586-2900-44b5-9f3b-b71291001b87_0|orf_21-1244", "protein_id": "3aac9586-2900-44b5-9f3b-b71291001b87_0|orf_21-1244", "rna_call_id": "15856", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/441c6ff8-f0eb-4237-bd05-f70343c6b173_0|orf_20-910", "protein_id": "441c6ff8-f0eb-4237-bd05-f70343c6b173_0|orf_20-910", "rna_call_id": "15892", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-1244", "protein_id": "46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-1244", "rna_call_id": "15832", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5347aac4-7a9f-42d3-93ba-7fc0db002953_0|orf_26-1525", "protein_id": "5347aac4-7a9f-42d3-93ba-7fc0db002953_0|orf_26-1525", "rna_call_id": "15095", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/55d792c5-874e-4692-9a6d-56f76edd5467_0|orf_21-1445", "protein_id": "55d792c5-874e-4692-9a6d-56f76edd5467_0|orf_21-1445", "rna_call_id": "15632", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6b60b7af-50a2-4f8f-958d-217179e2b71c_0|orf_26-1543", "protein_id": "6b60b7af-50a2-4f8f-958d-217179e2b71c_0|orf_26-1543", "rna_call_id": "14888", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6c525d52-ed36-4c53-b385-7226f38f64f8_0|orf_19-909", "protein_id": "6c525d52-ed36-4c53-b385-7226f38f64f8_0|orf_19-909", "rna_call_id": "15925", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-1536", "protein_id": "79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-1536", "rna_call_id": "15788", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7b5be8bd-8ffc-48a1-9781-bfec86a48888_0|orf_20-1444", "protein_id": "7b5be8bd-8ffc-48a1-9781-bfec86a48888_0|orf_20-1444", "rna_call_id": "15701", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "protein_id": "a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "rna_call_id": "15849", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-920", "protein_id": "a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-920", "rna_call_id": "14603", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "protein_id": "c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "rna_call_id": "15663", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1474", "protein_id": "cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1474", "rna_call_id": "14232", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-1453", "protein_id": "dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-1453", "rna_call_id": "15503", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-1248", "protein_id": "e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-1248", "rna_call_id": "15146", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-1542", "protein_id": "f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-1542", "rna_call_id": "15075", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "protein_id": "f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "rna_call_id": "15717", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-836", "protein_id": "070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-836", "rna_call_id": "50871", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "protein_id": "23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "rna_call_id": "47812", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-686", "protein_id": "46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-686", "rna_call_id": "52205", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-888", "protein_id": "79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-888", "rna_call_id": "51245", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a3a8bd63-12de-4ea5-b5b3-6b56c6bd437c_0|orf_21-605", "protein_id": "a3a8bd63-12de-4ea5-b5b3-6b56c6bd437c_0|orf_21-605", "rna_call_id": "50200", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a60c1f20-8dc9-4d0c-94d2-fffb289fb370_0|orf_18-566", "protein_id": "a60c1f20-8dc9-4d0c-94d2-fffb289fb370_0|orf_18-566", "rna_call_id": "51999", "amino_acid_starts": [ 34 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "protein_id": "a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "rna_call_id": "52086", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-377", "protein_id": "a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-377", "rna_call_id": "47843", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd4a8c34-4304-4316-840d-f786c94cdbde_0|orf_21-686", "protein_id": "bd4a8c34-4304-4316-840d-f786c94cdbde_0|orf_21-686", "rna_call_id": "51085", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/be49f935-b9db-4ca2-9d2d-89bdde0fc623_0|orf_20-274", "protein_id": "be49f935-b9db-4ca2-9d2d-89bdde0fc623_0|orf_20-274", "rna_call_id": "51097", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bfbed6d6-5908-4882-ad8e-4b7dd2338c18_0|orf_34-408", "protein_id": "bfbed6d6-5908-4882-ad8e-4b7dd2338c18_0|orf_34-408", "rna_call_id": "46483", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "protein_id": "c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "rna_call_id": "51593", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1471", "protein_id": "cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1471", "rna_call_id": "46193", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cbfe0f1f-d0d8-400e-988d-4c470d9cb440_0|orf_34-408", "protein_id": "cbfe0f1f-d0d8-400e-988d-4c470d9cb440_0|orf_34-408", "rna_call_id": "46452", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-832", "protein_id": "dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-832", "rna_call_id": "46720", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-924", "protein_id": "e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-924", "rna_call_id": "49123", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-690", "protein_id": "f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-690", "rna_call_id": "49207", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "protein_id": "f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "rna_call_id": "50717", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe5ab0b0-5e17-40f9-aa58-2121eccccac0_0|orf_20-685", "protein_id": "fe5ab0b0-5e17-40f9-aa58-2121eccccac0_0|orf_20-685", "rna_call_id": "51580", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6921434|orf_16-1797", "protein_id": "molecule/6921434|orf_16-1797", "rna_call_id": "4286", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8037313|orf_18-539", "protein_id": "molecule/8037313|orf_18-539", "rna_call_id": "4274", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8953142|orf_16-543", "protein_id": "molecule/8953142|orf_16-543", "rna_call_id": "4307", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9491565|orf_29-919", "protein_id": "molecule/9491565|orf_29-919", "rna_call_id": "4084", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/11021917|orf_19-393", "protein_id": "molecule/11021917|orf_19-393", "rna_call_id": "6973", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3466631|orf_19-939", "protein_id": "molecule/3466631|orf_19-939", "rna_call_id": "6898", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3488313|orf_19-684", "protein_id": "molecule/3488313|orf_19-684", "rna_call_id": "6907", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3843360|orf_8-382", "protein_id": "molecule/3843360|orf_8-382", "rna_call_id": "7158", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4284163|orf_19-540", "protein_id": "molecule/4284163|orf_19-540", "rna_call_id": "6926", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/493572|orf_19-288", "protein_id": "molecule/493572|orf_19-288", "rna_call_id": "6848", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6789812|orf_7-1230", "protein_id": "molecule/6789812|orf_7-1230", "rna_call_id": "7186", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7844073|orf_8-2353", "protein_id": "molecule/7844073|orf_8-2353", "rna_call_id": "7189", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8037313|orf_18-539", "protein_id": "molecule/8037313|orf_18-539", "rna_call_id": "7002", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8953142|orf_16-543", "protein_id": "molecule/8953142|orf_16-543", "rna_call_id": "7062", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9491565|orf_29-919", "protein_id": "molecule/9491565|orf_29-919", "rna_call_id": "6707", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/1551|orf_20-409", "protein_id": "1551|orf_20-409", "rna_call_id": "8978", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/289|orf_18-353", "protein_id": "289|orf_18-353", "rna_call_id": "9061", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0078d354-5a2a-4381-b14f-67050e012b42_0|orf_26-400", "protein_id": "0078d354-5a2a-4381-b14f-67050e012b42_0|orf_26-400", "rna_call_id": "63503", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/085d9ee5-b0e2-4d3e-a3fc-cff6edb54996_0|orf_26-610", "protein_id": "085d9ee5-b0e2-4d3e-a3fc-cff6edb54996_0|orf_26-610", "rna_call_id": "63934", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/27bb3f84-759a-40df-b59d-bbad5231a713_0|orf_30-299", "protein_id": "27bb3f84-759a-40df-b59d-bbad5231a713_0|orf_30-299", "rna_call_id": "61616", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2d7cd727-8486-4fb8-8893-82c94dc4eedc_0|orf_26-1384", "protein_id": "2d7cd727-8486-4fb8-8893-82c94dc4eedc_0|orf_26-1384", "rna_call_id": "63944", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4838ed22-0fdf-4b19-a853-a4d51020e723_0|orf_31-300", "protein_id": "4838ed22-0fdf-4b19-a853-a4d51020e723_0|orf_31-300", "rna_call_id": "61051", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/521489dd-1cd9-4cca-b395-d3f845c085bc_0|orf_30-299", "protein_id": "521489dd-1cd9-4cca-b395-d3f845c085bc_0|orf_30-299", "rna_call_id": "61517", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5efea778-3812-464b-a9e1-c8076e89417d_0|orf_26-1462", "protein_id": "5efea778-3812-464b-a9e1-c8076e89417d_0|orf_26-1462", "rna_call_id": "64432", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/87347b2d-3d84-4698-b101-0cf0924b834b_0|orf_28-564", "protein_id": "87347b2d-3d84-4698-b101-0cf0924b834b_0|orf_28-564", "rna_call_id": "62061", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8f5357ad-8db3-421a-a0e4-fd292a199365_0|orf_29-919", "protein_id": "8f5357ad-8db3-421a-a0e4-fd292a199365_0|orf_29-919", "rna_call_id": "60691", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/919e88cd-c380-48e7-a56e-677a29a4af59_0|orf_30-299", "protein_id": "919e88cd-c380-48e7-a56e-677a29a4af59_0|orf_30-299", "rna_call_id": "60060", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/97c9d845-dbb8-41f3-95b2-ad14e232556e_0|orf_24-299", "protein_id": "97c9d845-dbb8-41f3-95b2-ad14e232556e_0|orf_24-299", "rna_call_id": "64546", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c2e6a336-ae94-47b8-b236-c870bd302db9_0|orf_28-303", "protein_id": "c2e6a336-ae94-47b8-b236-c870bd302db9_0|orf_28-303", "rna_call_id": "62828", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d0ae4d9d-e4a2-4cbf-858a-cd65ebea0b04_0|orf_50-715", "protein_id": "d0ae4d9d-e4a2-4cbf-858a-cd65ebea0b04_0|orf_50-715", "rna_call_id": "59211", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d2d1917a-7e52-4c0e-90a6-98299a5e3d94_0|orf_26-298", "protein_id": "d2d1917a-7e52-4c0e-90a6-98299a5e3d94_0|orf_26-298", "rna_call_id": "63463", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e706a71c-ca3f-4aa8-aa7e-234783efd12c_0|orf_24-545", "protein_id": "e706a71c-ca3f-4aa8-aa7e-234783efd12c_0|orf_24-545", "rna_call_id": "64857", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f3568b2a-8bf2-4357-9832-cd0a6e29645e_0|orf_33-308", "protein_id": "f3568b2a-8bf2-4357-9832-cd0a6e29645e_0|orf_33-308", "rna_call_id": "59690", "amino_acid_starts": [ 26 ] } ] }, { "peptide_id": "EXOC4-chr7-133274996.peptide-2", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "SVIRTLSTIDDVEDREN", "scoring_region": { "sequence": "SVIRTLSTIDDVEDREN", "start": 0, "end": 17, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-908", "protein_id": "070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-908", "rna_call_id": "16157", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/12cf7430-2a65-4c0b-94fe-fd17a809eb2e_0|orf_29-1453", "protein_id": "12cf7430-2a65-4c0b-94fe-fd17a809eb2e_0|orf_29-1453", "rna_call_id": "14421", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "protein_id": "23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "rna_call_id": "14435", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2a0d9567-0e7c-4ad8-b739-87fbfac10422_0|orf_31-1455", "protein_id": "2a0d9567-0e7c-4ad8-b739-87fbfac10422_0|orf_31-1455", "rna_call_id": "14465", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3101801f-1f95-40e9-b6c6-2af1a3924314_0|orf_32-1456", "protein_id": "3101801f-1f95-40e9-b6c6-2af1a3924314_0|orf_32-1456", "rna_call_id": "16172", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39b9cf3d-1796-457c-975d-acde6b6222c1_0|orf_19-1800", "protein_id": "39b9cf3d-1796-457c-975d-acde6b6222c1_0|orf_19-1800", "rna_call_id": "15683", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3aac9586-2900-44b5-9f3b-b71291001b87_0|orf_21-1244", "protein_id": "3aac9586-2900-44b5-9f3b-b71291001b87_0|orf_21-1244", "rna_call_id": "15856", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/441c6ff8-f0eb-4237-bd05-f70343c6b173_0|orf_20-910", "protein_id": "441c6ff8-f0eb-4237-bd05-f70343c6b173_0|orf_20-910", "rna_call_id": "15892", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-1244", "protein_id": "46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-1244", "rna_call_id": "15832", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5347aac4-7a9f-42d3-93ba-7fc0db002953_0|orf_26-1525", "protein_id": "5347aac4-7a9f-42d3-93ba-7fc0db002953_0|orf_26-1525", "rna_call_id": "15095", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/55d792c5-874e-4692-9a6d-56f76edd5467_0|orf_21-1445", "protein_id": "55d792c5-874e-4692-9a6d-56f76edd5467_0|orf_21-1445", "rna_call_id": "15632", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6b60b7af-50a2-4f8f-958d-217179e2b71c_0|orf_26-1543", "protein_id": "6b60b7af-50a2-4f8f-958d-217179e2b71c_0|orf_26-1543", "rna_call_id": "14888", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6c525d52-ed36-4c53-b385-7226f38f64f8_0|orf_19-909", "protein_id": "6c525d52-ed36-4c53-b385-7226f38f64f8_0|orf_19-909", "rna_call_id": "15925", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-1536", "protein_id": "79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-1536", "rna_call_id": "15788", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7b5be8bd-8ffc-48a1-9781-bfec86a48888_0|orf_20-1444", "protein_id": "7b5be8bd-8ffc-48a1-9781-bfec86a48888_0|orf_20-1444", "rna_call_id": "15701", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "protein_id": "a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "rna_call_id": "15849", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-920", "protein_id": "a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-920", "rna_call_id": "14603", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "protein_id": "c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "rna_call_id": "15663", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1474", "protein_id": "cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1474", "rna_call_id": "14232", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-1453", "protein_id": "dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-1453", "rna_call_id": "15503", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-1248", "protein_id": "e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-1248", "rna_call_id": "15146", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-1542", "protein_id": "f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-1542", "rna_call_id": "15075", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "protein_id": "f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "rna_call_id": "15717", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-836", "protein_id": "070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-836", "rna_call_id": "50871", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "protein_id": "23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "rna_call_id": "47812", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-686", "protein_id": "46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-686", "rna_call_id": "52205", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6a514f69-ae36-4a38-9fb8-0831801f35fe_0|orf_28-168", "protein_id": "6a514f69-ae36-4a38-9fb8-0831801f35fe_0|orf_28-168", "rna_call_id": "47994", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-888", "protein_id": "79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-888", "rna_call_id": "51245", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a3a8bd63-12de-4ea5-b5b3-6b56c6bd437c_0|orf_21-605", "protein_id": "a3a8bd63-12de-4ea5-b5b3-6b56c6bd437c_0|orf_21-605", "rna_call_id": "50200", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a60c1f20-8dc9-4d0c-94d2-fffb289fb370_0|orf_18-566", "protein_id": "a60c1f20-8dc9-4d0c-94d2-fffb289fb370_0|orf_18-566", "rna_call_id": "51999", "amino_acid_starts": [ 34 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "protein_id": "a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "rna_call_id": "52086", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-377", "protein_id": "a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-377", "rna_call_id": "47843", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd4a8c34-4304-4316-840d-f786c94cdbde_0|orf_21-686", "protein_id": "bd4a8c34-4304-4316-840d-f786c94cdbde_0|orf_21-686", "rna_call_id": "51085", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/be49f935-b9db-4ca2-9d2d-89bdde0fc623_0|orf_20-274", "protein_id": "be49f935-b9db-4ca2-9d2d-89bdde0fc623_0|orf_20-274", "rna_call_id": "51097", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bfbed6d6-5908-4882-ad8e-4b7dd2338c18_0|orf_34-408", "protein_id": "bfbed6d6-5908-4882-ad8e-4b7dd2338c18_0|orf_34-408", "rna_call_id": "46483", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "protein_id": "c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "rna_call_id": "51593", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1471", "protein_id": "cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1471", "rna_call_id": "46193", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cbfe0f1f-d0d8-400e-988d-4c470d9cb440_0|orf_34-408", "protein_id": "cbfe0f1f-d0d8-400e-988d-4c470d9cb440_0|orf_34-408", "rna_call_id": "46452", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-832", "protein_id": "dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-832", "rna_call_id": "46720", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-924", "protein_id": "e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-924", "rna_call_id": "49123", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-690", "protein_id": "f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-690", "rna_call_id": "49207", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "protein_id": "f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "rna_call_id": "50717", "amino_acid_starts": [ 26 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe5ab0b0-5e17-40f9-aa58-2121eccccac0_0|orf_20-685", "protein_id": "fe5ab0b0-5e17-40f9-aa58-2121eccccac0_0|orf_20-685", "rna_call_id": "51580", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6921434|orf_16-1797", "protein_id": "molecule/6921434|orf_16-1797", "rna_call_id": "4286", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8037313|orf_18-539", "protein_id": "molecule/8037313|orf_18-539", "rna_call_id": "4274", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8953142|orf_16-543", "protein_id": "molecule/8953142|orf_16-543", "rna_call_id": "4307", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9491565|orf_29-919", "protein_id": "molecule/9491565|orf_29-919", "rna_call_id": "4084", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/11021917|orf_19-393", "protein_id": "molecule/11021917|orf_19-393", "rna_call_id": "6973", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3466631|orf_19-939", "protein_id": "molecule/3466631|orf_19-939", "rna_call_id": "6898", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3488313|orf_19-684", "protein_id": "molecule/3488313|orf_19-684", "rna_call_id": "6907", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3843360|orf_8-382", "protein_id": "molecule/3843360|orf_8-382", "rna_call_id": "7158", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4284163|orf_19-540", "protein_id": "molecule/4284163|orf_19-540", "rna_call_id": "6926", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/493572|orf_19-288", "protein_id": "molecule/493572|orf_19-288", "rna_call_id": "6848", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6789812|orf_7-1230", "protein_id": "molecule/6789812|orf_7-1230", "rna_call_id": "7186", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7844073|orf_8-2353", "protein_id": "molecule/7844073|orf_8-2353", "rna_call_id": "7189", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8037313|orf_18-539", "protein_id": "molecule/8037313|orf_18-539", "rna_call_id": "7002", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8953142|orf_16-543", "protein_id": "molecule/8953142|orf_16-543", "rna_call_id": "7062", "amino_acid_starts": [ 26 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9491565|orf_29-919", "protein_id": "molecule/9491565|orf_29-919", "rna_call_id": "6707", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/1551|orf_20-409", "protein_id": "1551|orf_20-409", "rna_call_id": "8978", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/289|orf_18-353", "protein_id": "289|orf_18-353", "rna_call_id": "9061", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0078d354-5a2a-4381-b14f-67050e012b42_0|orf_26-400", "protein_id": "0078d354-5a2a-4381-b14f-67050e012b42_0|orf_26-400", "rna_call_id": "63503", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/085d9ee5-b0e2-4d3e-a3fc-cff6edb54996_0|orf_26-610", "protein_id": "085d9ee5-b0e2-4d3e-a3fc-cff6edb54996_0|orf_26-610", "rna_call_id": "63934", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/27bb3f84-759a-40df-b59d-bbad5231a713_0|orf_30-299", "protein_id": "27bb3f84-759a-40df-b59d-bbad5231a713_0|orf_30-299", "rna_call_id": "61616", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2d7cd727-8486-4fb8-8893-82c94dc4eedc_0|orf_26-1384", "protein_id": "2d7cd727-8486-4fb8-8893-82c94dc4eedc_0|orf_26-1384", "rna_call_id": "63944", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4838ed22-0fdf-4b19-a853-a4d51020e723_0|orf_31-300", "protein_id": "4838ed22-0fdf-4b19-a853-a4d51020e723_0|orf_31-300", "rna_call_id": "61051", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/521489dd-1cd9-4cca-b395-d3f845c085bc_0|orf_30-299", "protein_id": "521489dd-1cd9-4cca-b395-d3f845c085bc_0|orf_30-299", "rna_call_id": "61517", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5efea778-3812-464b-a9e1-c8076e89417d_0|orf_26-1462", "protein_id": "5efea778-3812-464b-a9e1-c8076e89417d_0|orf_26-1462", "rna_call_id": "64432", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/87347b2d-3d84-4698-b101-0cf0924b834b_0|orf_28-564", "protein_id": "87347b2d-3d84-4698-b101-0cf0924b834b_0|orf_28-564", "rna_call_id": "62061", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8f5357ad-8db3-421a-a0e4-fd292a199365_0|orf_29-919", "protein_id": "8f5357ad-8db3-421a-a0e4-fd292a199365_0|orf_29-919", "rna_call_id": "60691", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/919e88cd-c380-48e7-a56e-677a29a4af59_0|orf_30-299", "protein_id": "919e88cd-c380-48e7-a56e-677a29a4af59_0|orf_30-299", "rna_call_id": "60060", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/97c9d845-dbb8-41f3-95b2-ad14e232556e_0|orf_24-299", "protein_id": "97c9d845-dbb8-41f3-95b2-ad14e232556e_0|orf_24-299", "rna_call_id": "64546", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c2e6a336-ae94-47b8-b236-c870bd302db9_0|orf_28-303", "protein_id": "c2e6a336-ae94-47b8-b236-c870bd302db9_0|orf_28-303", "rna_call_id": "62828", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d0ae4d9d-e4a2-4cbf-858a-cd65ebea0b04_0|orf_50-715", "protein_id": "d0ae4d9d-e4a2-4cbf-858a-cd65ebea0b04_0|orf_50-715", "rna_call_id": "59211", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d2d1917a-7e52-4c0e-90a6-98299a5e3d94_0|orf_26-298", "protein_id": "d2d1917a-7e52-4c0e-90a6-98299a5e3d94_0|orf_26-298", "rna_call_id": "63463", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e706a71c-ca3f-4aa8-aa7e-234783efd12c_0|orf_24-545", "protein_id": "e706a71c-ca3f-4aa8-aa7e-234783efd12c_0|orf_24-545", "rna_call_id": "64857", "amino_acid_starts": [ 26 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f3568b2a-8bf2-4357-9832-cd0a6e29645e_0|orf_33-308", "protein_id": "f3568b2a-8bf2-4357-9832-cd0a6e29645e_0|orf_33-308", "rna_call_id": "59690", "amino_acid_starts": [ 26 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-908", "protein_id": "070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-908", "rna_call_id": "16157", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/12cf7430-2a65-4c0b-94fe-fd17a809eb2e_0|orf_29-1453", "protein_id": "12cf7430-2a65-4c0b-94fe-fd17a809eb2e_0|orf_29-1453", "rna_call_id": "14421", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "protein_id": "23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "rna_call_id": "14435", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2a0d9567-0e7c-4ad8-b739-87fbfac10422_0|orf_31-1455", "protein_id": "2a0d9567-0e7c-4ad8-b739-87fbfac10422_0|orf_31-1455", "rna_call_id": "14465", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3101801f-1f95-40e9-b6c6-2af1a3924314_0|orf_32-1456", "protein_id": "3101801f-1f95-40e9-b6c6-2af1a3924314_0|orf_32-1456", "rna_call_id": "16172", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39b9cf3d-1796-457c-975d-acde6b6222c1_0|orf_19-1800", "protein_id": "39b9cf3d-1796-457c-975d-acde6b6222c1_0|orf_19-1800", "rna_call_id": "15683", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3aac9586-2900-44b5-9f3b-b71291001b87_0|orf_21-1244", "protein_id": "3aac9586-2900-44b5-9f3b-b71291001b87_0|orf_21-1244", "rna_call_id": "15856", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/441c6ff8-f0eb-4237-bd05-f70343c6b173_0|orf_20-910", "protein_id": "441c6ff8-f0eb-4237-bd05-f70343c6b173_0|orf_20-910", "rna_call_id": "15892", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-1244", "protein_id": "46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-1244", "rna_call_id": "15832", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/5347aac4-7a9f-42d3-93ba-7fc0db002953_0|orf_26-1525", "protein_id": "5347aac4-7a9f-42d3-93ba-7fc0db002953_0|orf_26-1525", "rna_call_id": "15095", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/55d792c5-874e-4692-9a6d-56f76edd5467_0|orf_21-1445", "protein_id": "55d792c5-874e-4692-9a6d-56f76edd5467_0|orf_21-1445", "rna_call_id": "15632", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6b60b7af-50a2-4f8f-958d-217179e2b71c_0|orf_26-1543", "protein_id": "6b60b7af-50a2-4f8f-958d-217179e2b71c_0|orf_26-1543", "rna_call_id": "14888", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6c525d52-ed36-4c53-b385-7226f38f64f8_0|orf_19-909", "protein_id": "6c525d52-ed36-4c53-b385-7226f38f64f8_0|orf_19-909", "rna_call_id": "15925", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-1536", "protein_id": "79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-1536", "rna_call_id": "15788", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7b5be8bd-8ffc-48a1-9781-bfec86a48888_0|orf_20-1444", "protein_id": "7b5be8bd-8ffc-48a1-9781-bfec86a48888_0|orf_20-1444", "rna_call_id": "15701", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "protein_id": "a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "rna_call_id": "15849", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-920", "protein_id": "a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-920", "rna_call_id": "14603", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "protein_id": "c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "rna_call_id": "15663", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1474", "protein_id": "cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1474", "rna_call_id": "14232", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-1453", "protein_id": "dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-1453", "rna_call_id": "15503", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-1248", "protein_id": "e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-1248", "rna_call_id": "15146", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-1542", "protein_id": "f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-1542", "rna_call_id": "15075", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "protein_id": "f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "rna_call_id": "15717", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-836", "protein_id": "070b05af-bf47-4c37-b45b-777597517afa_0|orf_18-836", "rna_call_id": "50871", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "protein_id": "23026966-a2f7-4467-8ffb-13ccf6f045b6_0|orf_29-1810", "rna_call_id": "47812", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-686", "protein_id": "46ed46b0-dbfd-4bad-99be-4ed8e1171112_0|orf_21-686", "rna_call_id": "52205", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6a514f69-ae36-4a38-9fb8-0831801f35fe_0|orf_28-168", "protein_id": "6a514f69-ae36-4a38-9fb8-0831801f35fe_0|orf_28-168", "rna_call_id": "47994", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-888", "protein_id": "79392314-3916-4c53-98ca-92a19dfa95b3_0|orf_19-888", "rna_call_id": "51245", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/8ab432ea-4b95-482f-8b96-26ec6175ef68_0|orf_28-303", "protein_id": "8ab432ea-4b95-482f-8b96-26ec6175ef68_0|orf_28-303", "rna_call_id": "48280", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a3a8bd63-12de-4ea5-b5b3-6b56c6bd437c_0|orf_21-605", "protein_id": "a3a8bd63-12de-4ea5-b5b3-6b56c6bd437c_0|orf_21-605", "rna_call_id": "50200", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a60c1f20-8dc9-4d0c-94d2-fffb289fb370_0|orf_18-566", "protein_id": "a60c1f20-8dc9-4d0c-94d2-fffb289fb370_0|orf_18-566", "rna_call_id": "51999", "variant_amino_acid_start": 42 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "protein_id": "a73a19dd-bb20-4ab7-8e9e-1fd69c49afe2_0|orf_24-1247", "rna_call_id": "52086", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-377", "protein_id": "a7475a49-2fe2-4b73-9277-018ed1dcf917_0|orf_30-377", "rna_call_id": "47843", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd4a8c34-4304-4316-840d-f786c94cdbde_0|orf_21-686", "protein_id": "bd4a8c34-4304-4316-840d-f786c94cdbde_0|orf_21-686", "rna_call_id": "51085", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/be49f935-b9db-4ca2-9d2d-89bdde0fc623_0|orf_20-274", "protein_id": "be49f935-b9db-4ca2-9d2d-89bdde0fc623_0|orf_20-274", "rna_call_id": "51097", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bfbed6d6-5908-4882-ad8e-4b7dd2338c18_0|orf_34-408", "protein_id": "bfbed6d6-5908-4882-ad8e-4b7dd2338c18_0|orf_34-408", "rna_call_id": "46483", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "protein_id": "c7e0e298-dd7b-4a78-b311-5f1e0a0fb16e_0|orf_20-1444", "rna_call_id": "51593", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1471", "protein_id": "cb254987-3e20-4640-8f3d-677752abfe8a_0|orf_50-1471", "rna_call_id": "46193", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cbfe0f1f-d0d8-400e-988d-4c470d9cb440_0|orf_34-408", "protein_id": "cbfe0f1f-d0d8-400e-988d-4c470d9cb440_0|orf_34-408", "rna_call_id": "46452", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-832", "protein_id": "dd72965f-94fe-4141-a04b-824ddacb18f9_0|orf_29-832", "rna_call_id": "46720", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-924", "protein_id": "e412d321-14a1-4af3-aae6-d59b77f736ce_0|orf_25-924", "rna_call_id": "49123", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ef0673c0-ff11-4c28-9d9b-6ef6b99c096d_0|orf_17-190", "protein_id": "ef0673c0-ff11-4c28-9d9b-6ef6b99c096d_0|orf_17-190", "rna_call_id": "50640", "variant_amino_acid_start": 31 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-690", "protein_id": "f2c8803f-727c-46d8-af0d-e52b0213fe89_0|orf_25-690", "rna_call_id": "49207", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "protein_id": "f8c170d1-4f3b-43fa-a18b-1a56f1257808_0|orf_21-1445", "rna_call_id": "50717", "variant_amino_acid_start": 34 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/fe5ab0b0-5e17-40f9-aa58-2121eccccac0_0|orf_20-685", "protein_id": "fe5ab0b0-5e17-40f9-aa58-2121eccccac0_0|orf_20-685", "rna_call_id": "51580", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6921434|orf_16-1797", "protein_id": "molecule/6921434|orf_16-1797", "rna_call_id": "4286", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8037313|orf_18-539", "protein_id": "molecule/8037313|orf_18-539", "rna_call_id": "4274", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8953142|orf_16-543", "protein_id": "molecule/8953142|orf_16-543", "rna_call_id": "4307", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9491565|orf_29-919", "protein_id": "molecule/9491565|orf_29-919", "rna_call_id": "4084", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/11021917|orf_19-393", "protein_id": "molecule/11021917|orf_19-393", "rna_call_id": "6973", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3466631|orf_19-939", "protein_id": "molecule/3466631|orf_19-939", "rna_call_id": "6898", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3488313|orf_19-684", "protein_id": "molecule/3488313|orf_19-684", "rna_call_id": "6907", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3843360|orf_8-382", "protein_id": "molecule/3843360|orf_8-382", "rna_call_id": "7158", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4284163|orf_19-540", "protein_id": "molecule/4284163|orf_19-540", "rna_call_id": "6926", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/493572|orf_19-288", "protein_id": "molecule/493572|orf_19-288", "rna_call_id": "6848", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6789812|orf_7-1230", "protein_id": "molecule/6789812|orf_7-1230", "rna_call_id": "7186", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7844073|orf_8-2353", "protein_id": "molecule/7844073|orf_8-2353", "rna_call_id": "7189", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8037313|orf_18-539", "protein_id": "molecule/8037313|orf_18-539", "rna_call_id": "7002", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8953142|orf_16-543", "protein_id": "molecule/8953142|orf_16-543", "rna_call_id": "7062", "variant_amino_acid_start": 34 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9491565|orf_29-919", "protein_id": "molecule/9491565|orf_29-919", "rna_call_id": "6707", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/1551|orf_20-409", "protein_id": "1551|orf_20-409", "rna_call_id": "8978", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "reconstruction_id": "T2-ONT/assembly-ms1/289|orf_18-353", "protein_id": "289|orf_18-353", "rna_call_id": "9061", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0078d354-5a2a-4381-b14f-67050e012b42_0|orf_26-400", "protein_id": "0078d354-5a2a-4381-b14f-67050e012b42_0|orf_26-400", "rna_call_id": "63503", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/085d9ee5-b0e2-4d3e-a3fc-cff6edb54996_0|orf_26-610", "protein_id": "085d9ee5-b0e2-4d3e-a3fc-cff6edb54996_0|orf_26-610", "rna_call_id": "63934", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/27bb3f84-759a-40df-b59d-bbad5231a713_0|orf_30-299", "protein_id": "27bb3f84-759a-40df-b59d-bbad5231a713_0|orf_30-299", "rna_call_id": "61616", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/2d7cd727-8486-4fb8-8893-82c94dc4eedc_0|orf_26-1384", "protein_id": "2d7cd727-8486-4fb8-8893-82c94dc4eedc_0|orf_26-1384", "rna_call_id": "63944", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4838ed22-0fdf-4b19-a853-a4d51020e723_0|orf_31-300", "protein_id": "4838ed22-0fdf-4b19-a853-a4d51020e723_0|orf_31-300", "rna_call_id": "61051", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/521489dd-1cd9-4cca-b395-d3f845c085bc_0|orf_30-299", "protein_id": "521489dd-1cd9-4cca-b395-d3f845c085bc_0|orf_30-299", "rna_call_id": "61517", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/5efea778-3812-464b-a9e1-c8076e89417d_0|orf_26-1462", "protein_id": "5efea778-3812-464b-a9e1-c8076e89417d_0|orf_26-1462", "rna_call_id": "64432", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/87347b2d-3d84-4698-b101-0cf0924b834b_0|orf_28-564", "protein_id": "87347b2d-3d84-4698-b101-0cf0924b834b_0|orf_28-564", "rna_call_id": "62061", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8f5357ad-8db3-421a-a0e4-fd292a199365_0|orf_29-919", "protein_id": "8f5357ad-8db3-421a-a0e4-fd292a199365_0|orf_29-919", "rna_call_id": "60691", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/919e88cd-c380-48e7-a56e-677a29a4af59_0|orf_30-299", "protein_id": "919e88cd-c380-48e7-a56e-677a29a4af59_0|orf_30-299", "rna_call_id": "60060", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/97c9d845-dbb8-41f3-95b2-ad14e232556e_0|orf_24-299", "protein_id": "97c9d845-dbb8-41f3-95b2-ad14e232556e_0|orf_24-299", "rna_call_id": "64546", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c2e6a336-ae94-47b8-b236-c870bd302db9_0|orf_28-303", "protein_id": "c2e6a336-ae94-47b8-b236-c870bd302db9_0|orf_28-303", "rna_call_id": "62828", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d0ae4d9d-e4a2-4cbf-858a-cd65ebea0b04_0|orf_50-715", "protein_id": "d0ae4d9d-e4a2-4cbf-858a-cd65ebea0b04_0|orf_50-715", "rna_call_id": "59211", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d2d1917a-7e52-4c0e-90a6-98299a5e3d94_0|orf_26-298", "protein_id": "d2d1917a-7e52-4c0e-90a6-98299a5e3d94_0|orf_26-298", "rna_call_id": "63463", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d62ec7c6-b015-448a-a72f-778bab715924_0|orf_25-207", "protein_id": "d62ec7c6-b015-448a-a72f-778bab715924_0|orf_25-207", "rna_call_id": "64802", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e706a71c-ca3f-4aa8-aa7e-234783efd12c_0|orf_24-545", "protein_id": "e706a71c-ca3f-4aa8-aa7e-234783efd12c_0|orf_24-545", "rna_call_id": "64857", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f13cd92f-4f40-4d1d-a6ea-6608b949583e_0|orf_27-209", "protein_id": "f13cd92f-4f40-4d1d-a6ea-6608b949583e_0|orf_27-209", "rna_call_id": "63549", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f3568b2a-8bf2-4357-9832-cd0a6e29645e_0|orf_33-308", "protein_id": "f3568b2a-8bf2-4357-9832-cd0a6e29645e_0|orf_33-308", "rna_call_id": "59690", "variant_amino_acid_start": 34 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ff1c2148-527a-48f6-b185-b7b6b722bd27_0|orf_56-316", "protein_id": "ff1c2148-527a-48f6-b185-b7b6b722bd27_0|orf_56-316", "rna_call_id": "60455", "variant_amino_acid_start": 33 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 60 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 66 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 21 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 26 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 2 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 8 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 57 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 3 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 213, "alt_reads": 64, "total_reads": 277, "vaf": 0.231, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 999, "alt_reads": 2, "total_reads": 1001, "vaf": 0.002, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 210, "alt_reads": 52, "total_reads": 262, "vaf": 0.1985, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 166, "alt_reads": 21, "total_reads": 187, "vaf": 0.1123, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 210, "alt_reads": 50, "total_reads": 260, "vaf": 0.1923, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 287, "alt_reads": 18, "total_reads": 305, "vaf": 0.059, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 571, "alt_reads": 52, "total_reads": 624, "vaf": 0.0833, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 281, "alt_reads": 20, "total_reads": 301, "vaf": 0.0664, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 348, "alt_reads": 48, "total_reads": 398, "vaf": 0.1206, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 2114, "alt_reads": 210, "total_reads": 2324, "vaf": 0.0904, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 319, "alt_reads": 36, "total_reads": 355, "vaf": 0.1014, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 457, "alt_reads": 5, "total_reads": 462, "vaf": 0.0108, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 893, "alt_reads": 130, "total_reads": 1025, "vaf": 0.1268, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1552, "alt_reads": 178, "total_reads": 1740, "vaf": 0.1023, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1342, "alt_reads": 5, "total_reads": 1348, "vaf": 0.0037, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 178, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 130, "category": "multiple", "sid_alt_reads": 130, "exacto_raw_rnas": 66 }, "T2-ONT": { "max_alt_reads": 178, "category": "multiple", "sid_alt_reads": 178, "exacto_raw_rnas": 57 }, "T3-ONT": { "max_alt_reads": 5, "category": "multiple", "sid_alt_reads": 5, "exacto_raw_rnas": 3 }, "T1-PacBio": { "max_alt_reads": 26, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 26 }, "T2-ILMN": { "max_alt_reads": 52, "category": "multiple", "sid_alt_reads": 52, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "BMP1-chr8-22192067", "gene": "BMP1", "chrom": "chr8", "pos": 22192067, "ref": "T", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ser366Thr", "consequence": "missense_variant", "vaccines": [ "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "BMP1-chr8-22192067.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 17, "sequence": "YSAHMHCVWRISVTPGEKIILNFTTLDLYRSRL", "scoring_region": { "sequence": "YSAHMHCVWRISVTPGEKIILNFTTLDLYRSRL", "start": 0, "end": 33, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/5328|orf_10-1356", "protein_id": "5328|orf_10-1356", "rna_call_id": "9010", "amino_acid_starts": [ 73 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/03343e0b-44e9-479d-8b9e-077b1ff4bce6_0|orf_890-2329", "protein_id": "03343e0b-44e9-479d-8b9e-077b1ff4bce6_0|orf_890-2329", "rna_call_id": "17371", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/03782511-7341-4f45-8e0c-b988e1fbc6b2_0|orf_139-1578", "protein_id": "03782511-7341-4f45-8e0c-b988e1fbc6b2_0|orf_139-1578", "rna_call_id": "18164", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/050f0f95-9578-44f7-a831-1edb1fbbc2df_0|orf_179-2581", "protein_id": "050f0f95-9578-44f7-a831-1edb1fbbc2df_0|orf_179-2581", "rna_call_id": "17309", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_36-2546", "protein_id": "07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_36-2546", "rna_call_id": "17960", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/08305c0d-a7f3-4e27-a6a4-baa7fd989f5e_0|orf_112-2298", "protein_id": "08305c0d-a7f3-4e27-a6a4-baa7fd989f5e_0|orf_112-2298", "rna_call_id": "17397", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2235", "protein_id": "086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2235", "rna_call_id": "17681", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_174-1376", "protein_id": "0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_174-1376", "rna_call_id": "17314", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2235", "protein_id": "0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2235", "rna_call_id": "17697", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/16daa179-609c-4632-8fee-8ec022a167d7_0|orf_207-1646", "protein_id": "16daa179-609c-4632-8fee-8ec022a167d7_0|orf_207-1646", "rna_call_id": "18162", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_844-2442", "protein_id": "1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_844-2442", "rna_call_id": "17761", "amino_acid_starts": [ 73 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_11-2203", "protein_id": "19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_11-2203", "rna_call_id": "18069", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_15-2975", "protein_id": "2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_15-2975", "rna_call_id": "18055", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/301deb91-0736-4cc9-a086-e889a64c133e_0|orf_233-2425", "protein_id": "301deb91-0736-4cc9-a086-e889a64c133e_0|orf_233-2425", "rna_call_id": "17177", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/354ecfdd-4b90-40e4-a787-fbae766ae267_0|orf_20-1558", "protein_id": "354ecfdd-4b90-40e4-a787-fbae766ae267_0|orf_20-1558", "rna_call_id": "18011", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2225", "protein_id": "36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2225", "rna_call_id": "17788", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_120-2312", "protein_id": "39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_120-2312", "rna_call_id": "17374", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "protein_id": "3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "rna_call_id": "17708", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3c4bce1d-858d-461f-93aa-7786d4657380_0|orf_823-2262", "protein_id": "3c4bce1d-858d-461f-93aa-7786d4657380_0|orf_823-2262", "rna_call_id": "17778", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/52fd0854-e183-4e8e-b64f-c15523d8c37f_0|orf_82-1980", "protein_id": "52fd0854-e183-4e8e-b64f-c15523d8c37f_0|orf_82-1980", "rna_call_id": "17532", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/580565cf-f3bb-4e9b-93e1-e81a688e523a_0|orf_33-2225", "protein_id": "580565cf-f3bb-4e9b-93e1-e81a688e523a_0|orf_33-2225", "rna_call_id": "17786", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_103-1833", "protein_id": "623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_103-1833", "rna_call_id": "18154", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/62ff7def-32d2-4f70-bc1b-d26fa353a835_0|orf_43-2235", "protein_id": "62ff7def-32d2-4f70-bc1b-d26fa353a835_0|orf_43-2235", "rna_call_id": "17674", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/639c0f9a-2e7d-429e-9d72-5d52f24d7ac7_0|orf_31-2223", "protein_id": "639c0f9a-2e7d-429e-9d72-5d52f24d7ac7_0|orf_31-2223", "rna_call_id": "17844", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2278", "protein_id": "64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2278", "rna_call_id": "17515", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_112-2304", "protein_id": "653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_112-2304", "rna_call_id": "17395", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-2234", "protein_id": "68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-2234", "rna_call_id": "17695", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6d505164-2b32-4413-8422-ed774dadd644_0|orf_121-2313", "protein_id": "6d505164-2b32-4413-8422-ed774dadd644_0|orf_121-2313", "rna_call_id": "17361", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_745-2184", "protein_id": "72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_745-2184", "rna_call_id": "18119", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/77602395-6c56-45cb-9756-0a2616eee214_0|orf_43-2235", "protein_id": "77602395-6c56-45cb-9756-0a2616eee214_0|orf_43-2235", "rna_call_id": "17699", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7a5a5289-1b09-4910-87ec-ab94b0f281d6_0|orf_144-2336", "protein_id": "7a5a5289-1b09-4910-87ec-ab94b0f281d6_0|orf_144-2336", "rna_call_id": "17325", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7bfa1f87-74af-4d14-a973-dc2d0f2e33e4_0|orf_229-2373", "protein_id": "7bfa1f87-74af-4d14-a973-dc2d0f2e33e4_0|orf_229-2373", "rna_call_id": "17183", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-2210", "protein_id": "7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-2210", "rna_call_id": "18052", "amino_acid_starts": [ 344 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7f89fc15-b8cc-4c5d-b5d8-7b4a975007ac_0|orf_42-2234", "protein_id": "7f89fc15-b8cc-4c5d-b5d8-7b4a975007ac_0|orf_42-2234", "rna_call_id": "17702", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/80bdc6a2-5ddf-453b-bd2f-cbfe3a7af699_0|orf_33-2225", "protein_id": "80bdc6a2-5ddf-453b-bd2f-cbfe3a7af699_0|orf_33-2225", "rna_call_id": "17797", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8655a9b1-148b-41f2-a759-f3a8f1cf0166_0|orf_2034-3146", "protein_id": "8655a9b1-148b-41f2-a759-f3a8f1cf0166_0|orf_2034-3146", "rna_call_id": "17243", "amino_acid_starts": [ 80 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1428", "protein_id": "88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1428", "rna_call_id": "18176", "amino_acid_starts": [ 73 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_212-2404", "protein_id": "907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_212-2404", "rna_call_id": "17205", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/93ab3460-f131-471c-9c04-e201badab597_0|orf_27-1970", "protein_id": "93ab3460-f131-471c-9c04-e201badab597_0|orf_27-1970", "rna_call_id": "18156", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_121-2541", "protein_id": "9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_121-2541", "rna_call_id": "17357", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_33-2225", "protein_id": "a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_33-2225", "rna_call_id": "17781", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_104-2116", "protein_id": "a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_104-2116", "rna_call_id": "18145", "amino_acid_starts": [ 211 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "protein_id": "a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "rna_call_id": "17981", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_92-2284", "protein_id": "b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_92-2284", "rna_call_id": "17478", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_36-2228", "protein_id": "b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_36-2228", "rna_call_id": "17742", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_28-2220", "protein_id": "b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_28-2220", "rna_call_id": "17906", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-2979", "protein_id": "b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-2979", "rna_call_id": "17885", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b90bed2e-3bcc-491d-a749-ab5b736e522d_0|orf_53-2245", "protein_id": "b90bed2e-3bcc-491d-a749-ab5b736e522d_0|orf_53-2245", "rna_call_id": "17658", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_87-2279", "protein_id": "bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_87-2279", "rna_call_id": "17519", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-2278", "protein_id": "becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-2278", "rna_call_id": "17521", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2236", "protein_id": "c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2236", "rna_call_id": "17677", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1513", "protein_id": "cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1513", "rna_call_id": "17554", "amino_acid_starts": [ 88 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_19-2211", "protein_id": "d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_19-2211", "rna_call_id": "18020", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_149-1879", "protein_id": "d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_149-1879", "rna_call_id": "18149", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/db43d41f-c259-4c20-bb37-440614e193cb_0|orf_83-2275", "protein_id": "db43d41f-c259-4c20-bb37-440614e193cb_0|orf_83-2275", "rna_call_id": "17545", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dddde5a2-b89a-4f82-82e0-26538a49d5bc_0|orf_83-2485", "protein_id": "dddde5a2-b89a-4f82-82e0-26538a49d5bc_0|orf_83-2485", "rna_call_id": "17540", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_105-2297", "protein_id": "de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_105-2297", "rna_call_id": "17404", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e2df4913-0153-46e6-b242-c72993b0be94_0|orf_32-2224", "protein_id": "e2df4913-0153-46e6-b242-c72993b0be94_0|orf_32-2224", "rna_call_id": "17976", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/edcdd4f5-54f3-4629-861b-86c4e0b1ab33_0|orf_36-2228", "protein_id": "edcdd4f5-54f3-4629-861b-86c4e0b1ab33_0|orf_36-2228", "rna_call_id": "17746", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_214-2403", "protein_id": "ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_214-2403", "rna_call_id": "17230", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_133-2325", "protein_id": "f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_133-2325", "rna_call_id": "17336", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f5f3c0ef-47a7-4d88-8a34-1cbed051e08f_0|orf_36-2228", "protein_id": "f5f3c0ef-47a7-4d88-8a34-1cbed051e08f_0|orf_36-2228", "rna_call_id": "17753", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-2213", "protein_id": "f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-2213", "rna_call_id": "18009", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ff2fc7a1-7c7e-427d-b34d-127d90001bc0_0|orf_213-2114", "protein_id": "ff2fc7a1-7c7e-427d-b34d-127d90001bc0_0|orf_213-2114", "rna_call_id": "17208", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_789-2189", "protein_id": "07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_789-2189", "rna_call_id": "61369", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2472", "protein_id": "086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2472", "rna_call_id": "60469", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_638-1378", "protein_id": "0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_638-1378", "rna_call_id": "58179", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2232", "protein_id": "0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2232", "rna_call_id": "60245", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_472-1326", "protein_id": "19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_472-1326", "rna_call_id": "62934", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2219", "protein_id": "36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2219", "rna_call_id": "61362", "amino_acid_starts": [ 340 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "protein_id": "3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "rna_call_id": "60423", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2275", "protein_id": "64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2275", "rna_call_id": "59348", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-1715", "protein_id": "68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-1715", "rna_call_id": "60340", "amino_acid_starts": [ 341 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/77602395-6c56-45cb-9756-0a2616eee214_0|orf_131-2446", "protein_id": "77602395-6c56-45cb-9756-0a2616eee214_0|orf_131-2446", "rna_call_id": "60287", "amino_acid_starts": [ 313 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-1331", "protein_id": "7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-1331", "rna_call_id": "62880", "amino_acid_starts": [ 343 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1671", "protein_id": "88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1671", "rna_call_id": "63541", "amino_acid_starts": [ 73 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_674-2644", "protein_id": "907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_674-2644", "rna_call_id": "57737", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_120-2036", "protein_id": "9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_120-2036", "rna_call_id": "58467", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_464-1465", "protein_id": "a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_464-1465", "rna_call_id": "63340", "amino_acid_starts": [ 90 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "protein_id": "a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "rna_call_id": "62473", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_838-2277", "protein_id": "b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_838-2277", "rna_call_id": "59020", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_788-2227", "protein_id": "b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_788-2227", "rna_call_id": "60657", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_782-2221", "protein_id": "b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_782-2221", "rna_call_id": "62068", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-1338", "protein_id": "b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-1338", "rna_call_id": "61919", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_547-2277", "protein_id": "bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_547-2277", "rna_call_id": "59457", "amino_acid_starts": [ 188 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2233", "protein_id": "c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2233", "rna_call_id": "60313", "amino_acid_starts": [ 342 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1222", "protein_id": "cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1222", "rna_call_id": "59583", "amino_acid_starts": [ 88 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_914-2512", "protein_id": "de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_914-2512", "rna_call_id": "58719", "amino_acid_starts": [ 73 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_963-2390", "protein_id": "ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_963-2390", "rna_call_id": "57820", "amino_acid_starts": [ 91 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_937-2322", "protein_id": "f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_937-2322", "rna_call_id": "58337", "amino_acid_starts": [ 73 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-1784", "protein_id": "f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-1784", "rna_call_id": "62520", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10053416|orf_34-2226", "protein_id": "molecule/10053416|orf_34-2226", "rna_call_id": "4672", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10933706|orf_120-2312", "protein_id": "molecule/10933706|orf_120-2312", "rna_call_id": "4625", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/11027571|orf_564-2294", "protein_id": "molecule/11027571|orf_564-2294", "rna_call_id": "4630", "amino_acid_starts": [ 188 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1723051|orf_211-2403", "protein_id": "molecule/1723051|orf_211-2403", "rna_call_id": "4597", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3103885|orf_25-2217", "protein_id": "molecule/3103885|orf_25-2217", "rna_call_id": "4687", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3369384|orf_130-3090", "protein_id": "molecule/3369384|orf_130-3090", "rna_call_id": "4617", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4537471|orf_42-2234", "protein_id": "molecule/4537471|orf_42-2234", "rna_call_id": "4668", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4732600|orf_27-2219", "protein_id": "molecule/4732600|orf_27-2219", "rna_call_id": "4686", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4837536|orf_52-1434", "protein_id": "molecule/4837536|orf_52-1434", "rna_call_id": "4698", "amino_acid_starts": [ 73 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5426151|orf_92-1351", "protein_id": "molecule/5426151|orf_92-1351", "rna_call_id": "4644", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5907924|orf_825-2312", "protein_id": "molecule/5907924|orf_825-2312", "rna_call_id": "4675", "amino_acid_starts": [ 91 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7606410|orf_81-2900", "protein_id": "molecule/7606410|orf_81-2900", "rna_call_id": "4653", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8866884|orf_120-2312", "protein_id": "molecule/8866884|orf_120-2312", "rna_call_id": "4623", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9868923|orf_125-2317", "protein_id": "molecule/9868923|orf_125-2317", "rna_call_id": "4622", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10053416|orf_34-1758", "protein_id": "molecule/10053416|orf_34-1758", "rna_call_id": "7803", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/11027571|orf_564-2504", "protein_id": "molecule/11027571|orf_564-2504", "rna_call_id": "7665", "amino_acid_starts": [ 188 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3103885|orf_25-2217", "protein_id": "molecule/3103885|orf_25-2217", "rna_call_id": "7833", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3369384|orf_130-3141", "protein_id": "molecule/3369384|orf_130-3141", "rna_call_id": "7602", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4308644|orf_1093-2019", "protein_id": "molecule/4308644|orf_1093-2019", "rna_call_id": "7498", "amino_acid_starts": [ 91 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4537471|orf_42-2444", "protein_id": "molecule/4537471|orf_42-2444", "rna_call_id": "7741", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4732600|orf_27-2219", "protein_id": "molecule/4732600|orf_27-2219", "rna_call_id": "7832", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4837536|orf_52-1434", "protein_id": "molecule/4837536|orf_52-1434", "rna_call_id": "7884", "amino_acid_starts": [ 73 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5426151|orf_92-1351", "protein_id": "molecule/5426151|orf_92-1351", "rna_call_id": "7685", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8866884|orf_120-2312", "protein_id": "molecule/8866884|orf_120-2312", "rna_call_id": "7644", "amino_acid_starts": [ 342 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9868923|orf_586-1440", "protein_id": "molecule/9868923|orf_586-1440", "rna_call_id": "7641", "amino_acid_starts": [ 188 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "protein_id": "13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "rna_call_id": "23624", "amino_acid_starts": [ 188 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2019e937-dafa-44a5-8a0f-74b12f012f8d_0|orf_32-2224", "protein_id": "2019e937-dafa-44a5-8a0f-74b12f012f8d_0|orf_32-2224", "rna_call_id": "23555", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/328fdf8c-216b-4f84-84d7-1becceed54e1_0|orf_36-2228", "protein_id": "328fdf8c-216b-4f84-84d7-1becceed54e1_0|orf_36-2228", "rna_call_id": "23531", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_60-2252", "protein_id": "44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_60-2252", "rna_call_id": "23558", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "protein_id": "4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "rna_call_id": "23579", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "protein_id": "61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "rna_call_id": "23607", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6a47a8ae-71e3-4bd7-90c2-8b6cb8fca016_0|orf_8-2197", "protein_id": "6a47a8ae-71e3-4bd7-90c2-8b6cb8fca016_0|orf_8-2197", "rna_call_id": "23630", "amino_acid_starts": [ 341 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7cfd9cc4-6588-4903-ab50-8e25bf8f2ea0_0|orf_85-2274", "protein_id": "7cfd9cc4-6588-4903-ab50-8e25bf8f2ea0_0|orf_85-2274", "rna_call_id": "23480", "amino_acid_starts": [ 341 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8c3bb791-0a7b-4c9e-ab6e-1cece14e5544_0|orf_210-2402", "protein_id": "8c3bb791-0a7b-4c9e-ab6e-1cece14e5544_0|orf_210-2402", "rna_call_id": "23412", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_212-1651", "protein_id": "9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_212-1651", "rna_call_id": "23694", "amino_acid_starts": [ 91 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_40-1479", "protein_id": "9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_40-1479", "rna_call_id": "23699", "amino_acid_starts": [ 91 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_56-2248", "protein_id": "a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_56-2248", "rna_call_id": "23561", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "protein_id": "a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "rna_call_id": "23409", "amino_acid_starts": [ 341 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_43-2235", "protein_id": "bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_43-2235", "rna_call_id": "23512", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e5e8f01b-3a29-441b-86f2-80ab74e1617a_0|orf_2-1387", "protein_id": "e5e8f01b-3a29-441b-86f2-80ab74e1617a_0|orf_2-1387", "rna_call_id": "23703", "amino_acid_starts": [ 73 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "protein_id": "e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "rna_call_id": "23605", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_69-2261", "protein_id": "f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_69-2261", "rna_call_id": "23489", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "protein_id": "13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "rna_call_id": "71125", "amino_acid_starts": [ 188 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "protein_id": "4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "rna_call_id": "70922", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "protein_id": "61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "rna_call_id": "71023", "amino_acid_starts": [ 342 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8346c39a-c383-4656-81ee-ae77add7737d_0|orf_492-1793", "protein_id": "8346c39a-c383-4656-81ee-ae77add7737d_0|orf_492-1793", "rna_call_id": "70952", "amino_acid_starts": [ 188 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_95-1480", "protein_id": "9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_95-1480", "rna_call_id": "71498", "amino_acid_starts": [ 73 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "protein_id": "a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "rna_call_id": "70066", "amino_acid_starts": [ 341 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "protein_id": "e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "rna_call_id": "70997", "amino_acid_starts": [ 342 ] } ] }, { "peptide_id": "BMP1-chr8-22192067.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "KIILNFTTL", "scoring_region": { "sequence": "KIILNFTTL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/5328|orf_10-1356", "protein_id": "5328|orf_10-1356", "rna_call_id": "9010", "amino_acid_starts": [ 90 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/03343e0b-44e9-479d-8b9e-077b1ff4bce6_0|orf_890-2329", "protein_id": "03343e0b-44e9-479d-8b9e-077b1ff4bce6_0|orf_890-2329", "rna_call_id": "17371", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/03782511-7341-4f45-8e0c-b988e1fbc6b2_0|orf_139-1578", "protein_id": "03782511-7341-4f45-8e0c-b988e1fbc6b2_0|orf_139-1578", "rna_call_id": "18164", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/050f0f95-9578-44f7-a831-1edb1fbbc2df_0|orf_179-2581", "protein_id": "050f0f95-9578-44f7-a831-1edb1fbbc2df_0|orf_179-2581", "rna_call_id": "17309", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_36-2546", "protein_id": "07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_36-2546", "rna_call_id": "17960", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/08305c0d-a7f3-4e27-a6a4-baa7fd989f5e_0|orf_112-2298", "protein_id": "08305c0d-a7f3-4e27-a6a4-baa7fd989f5e_0|orf_112-2298", "rna_call_id": "17397", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2235", "protein_id": "086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2235", "rna_call_id": "17681", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_174-1376", "protein_id": "0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_174-1376", "rna_call_id": "17314", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2235", "protein_id": "0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2235", "rna_call_id": "17697", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/16daa179-609c-4632-8fee-8ec022a167d7_0|orf_207-1646", "protein_id": "16daa179-609c-4632-8fee-8ec022a167d7_0|orf_207-1646", "rna_call_id": "18162", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_844-2442", "protein_id": "1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_844-2442", "rna_call_id": "17761", "amino_acid_starts": [ 90 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_11-2203", "protein_id": "19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_11-2203", "rna_call_id": "18069", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_15-2975", "protein_id": "2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_15-2975", "rna_call_id": "18055", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/301deb91-0736-4cc9-a086-e889a64c133e_0|orf_233-2425", "protein_id": "301deb91-0736-4cc9-a086-e889a64c133e_0|orf_233-2425", "rna_call_id": "17177", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/354ecfdd-4b90-40e4-a787-fbae766ae267_0|orf_20-1558", "protein_id": "354ecfdd-4b90-40e4-a787-fbae766ae267_0|orf_20-1558", "rna_call_id": "18011", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2225", "protein_id": "36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2225", "rna_call_id": "17788", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_120-2312", "protein_id": "39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_120-2312", "rna_call_id": "17374", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3a866e7c-58ab-4532-b05f-6e26caf052f1_0|orf_10-1818", "protein_id": "3a866e7c-58ab-4532-b05f-6e26caf052f1_0|orf_10-1818", "rna_call_id": "18220", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "protein_id": "3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "rna_call_id": "17708", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3c4bce1d-858d-461f-93aa-7786d4657380_0|orf_823-2262", "protein_id": "3c4bce1d-858d-461f-93aa-7786d4657380_0|orf_823-2262", "rna_call_id": "17778", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/52fd0854-e183-4e8e-b64f-c15523d8c37f_0|orf_82-1980", "protein_id": "52fd0854-e183-4e8e-b64f-c15523d8c37f_0|orf_82-1980", "rna_call_id": "17532", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/580565cf-f3bb-4e9b-93e1-e81a688e523a_0|orf_33-2225", "protein_id": "580565cf-f3bb-4e9b-93e1-e81a688e523a_0|orf_33-2225", "rna_call_id": "17786", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_103-1833", "protein_id": "623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_103-1833", "rna_call_id": "18154", "amino_acid_starts": [ 205 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/62ff7def-32d2-4f70-bc1b-d26fa353a835_0|orf_43-2235", "protein_id": "62ff7def-32d2-4f70-bc1b-d26fa353a835_0|orf_43-2235", "rna_call_id": "17674", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/639c0f9a-2e7d-429e-9d72-5d52f24d7ac7_0|orf_31-2223", "protein_id": "639c0f9a-2e7d-429e-9d72-5d52f24d7ac7_0|orf_31-2223", "rna_call_id": "17844", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2278", "protein_id": "64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2278", "rna_call_id": "17515", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_112-2304", "protein_id": "653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_112-2304", "rna_call_id": "17395", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-2234", "protein_id": "68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-2234", "rna_call_id": "17695", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "protein_id": "694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "rna_call_id": "18211", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "protein_id": "6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "rna_call_id": "18217", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6d505164-2b32-4413-8422-ed774dadd644_0|orf_121-2313", "protein_id": "6d505164-2b32-4413-8422-ed774dadd644_0|orf_121-2313", "rna_call_id": "17361", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_745-2184", "protein_id": "72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_745-2184", "rna_call_id": "18119", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/77602395-6c56-45cb-9756-0a2616eee214_0|orf_43-2235", "protein_id": "77602395-6c56-45cb-9756-0a2616eee214_0|orf_43-2235", "rna_call_id": "17699", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7a5a5289-1b09-4910-87ec-ab94b0f281d6_0|orf_144-2336", "protein_id": "7a5a5289-1b09-4910-87ec-ab94b0f281d6_0|orf_144-2336", "rna_call_id": "17325", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7bfa1f87-74af-4d14-a973-dc2d0f2e33e4_0|orf_229-2373", "protein_id": "7bfa1f87-74af-4d14-a973-dc2d0f2e33e4_0|orf_229-2373", "rna_call_id": "17183", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-2210", "protein_id": "7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-2210", "rna_call_id": "18052", "amino_acid_starts": [ 361 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7f89fc15-b8cc-4c5d-b5d8-7b4a975007ac_0|orf_42-2234", "protein_id": "7f89fc15-b8cc-4c5d-b5d8-7b4a975007ac_0|orf_42-2234", "rna_call_id": "17702", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/80bdc6a2-5ddf-453b-bd2f-cbfe3a7af699_0|orf_33-2225", "protein_id": "80bdc6a2-5ddf-453b-bd2f-cbfe3a7af699_0|orf_33-2225", "rna_call_id": "17797", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8655a9b1-148b-41f2-a759-f3a8f1cf0166_0|orf_2034-3146", "protein_id": "8655a9b1-148b-41f2-a759-f3a8f1cf0166_0|orf_2034-3146", "rna_call_id": "17243", "amino_acid_starts": [ 97 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1428", "protein_id": "88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1428", "rna_call_id": "18176", "amino_acid_starts": [ 90 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_212-2404", "protein_id": "907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_212-2404", "rna_call_id": "17205", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/93ab3460-f131-471c-9c04-e201badab597_0|orf_27-1970", "protein_id": "93ab3460-f131-471c-9c04-e201badab597_0|orf_27-1970", "rna_call_id": "18156", "amino_acid_starts": [ 205 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_121-2541", "protein_id": "9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_121-2541", "rna_call_id": "17357", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_33-2225", "protein_id": "a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_33-2225", "rna_call_id": "17781", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_104-2116", "protein_id": "a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_104-2116", "rna_call_id": "18145", "amino_acid_starts": [ 228 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "protein_id": "a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "rna_call_id": "17981", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_92-2284", "protein_id": "b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_92-2284", "rna_call_id": "17478", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_36-2228", "protein_id": "b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_36-2228", "rna_call_id": "17742", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_28-2220", "protein_id": "b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_28-2220", "rna_call_id": "17906", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-2979", "protein_id": "b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-2979", "rna_call_id": "17885", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b90bed2e-3bcc-491d-a749-ab5b736e522d_0|orf_53-2245", "protein_id": "b90bed2e-3bcc-491d-a749-ab5b736e522d_0|orf_53-2245", "rna_call_id": "17658", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_87-2279", "protein_id": "bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_87-2279", "rna_call_id": "17519", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-2278", "protein_id": "becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-2278", "rna_call_id": "17521", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1135-2292", "protein_id": "bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1135-2292", "rna_call_id": "17439", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2236", "protein_id": "c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2236", "rna_call_id": "17677", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1513", "protein_id": "cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1513", "rna_call_id": "17554", "amino_acid_starts": [ 105 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_19-2211", "protein_id": "d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_19-2211", "rna_call_id": "18020", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_149-1879", "protein_id": "d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_149-1879", "rna_call_id": "18149", "amino_acid_starts": [ 205 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/db43d41f-c259-4c20-bb37-440614e193cb_0|orf_83-2275", "protein_id": "db43d41f-c259-4c20-bb37-440614e193cb_0|orf_83-2275", "rna_call_id": "17545", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dddde5a2-b89a-4f82-82e0-26538a49d5bc_0|orf_83-2485", "protein_id": "dddde5a2-b89a-4f82-82e0-26538a49d5bc_0|orf_83-2485", "rna_call_id": "17540", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_105-2297", "protein_id": "de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_105-2297", "rna_call_id": "17404", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e2df4913-0153-46e6-b242-c72993b0be94_0|orf_32-2224", "protein_id": "e2df4913-0153-46e6-b242-c72993b0be94_0|orf_32-2224", "rna_call_id": "17976", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_194-1351", "protein_id": "e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_194-1351", "rna_call_id": "18196", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/edcdd4f5-54f3-4629-861b-86c4e0b1ab33_0|orf_36-2228", "protein_id": "edcdd4f5-54f3-4629-861b-86c4e0b1ab33_0|orf_36-2228", "rna_call_id": "17746", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_214-2403", "protein_id": "ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_214-2403", "rna_call_id": "17230", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_133-2325", "protein_id": "f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_133-2325", "rna_call_id": "17336", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f5f3c0ef-47a7-4d88-8a34-1cbed051e08f_0|orf_36-2228", "protein_id": "f5f3c0ef-47a7-4d88-8a34-1cbed051e08f_0|orf_36-2228", "rna_call_id": "17753", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-2213", "protein_id": "f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-2213", "rna_call_id": "18009", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ff2fc7a1-7c7e-427d-b34d-127d90001bc0_0|orf_213-2114", "protein_id": "ff2fc7a1-7c7e-427d-b34d-127d90001bc0_0|orf_213-2114", "rna_call_id": "17208", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_789-2189", "protein_id": "07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_789-2189", "rna_call_id": "61369", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2472", "protein_id": "086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2472", "rna_call_id": "60469", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_638-1378", "protein_id": "0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_638-1378", "rna_call_id": "58179", "amino_acid_starts": [ 205 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2232", "protein_id": "0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2232", "rna_call_id": "60245", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_1061-1375", "protein_id": "1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_1061-1375", "rna_call_id": "60808", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_472-1326", "protein_id": "19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_472-1326", "rna_call_id": "62934", "amino_acid_starts": [ 205 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_1051-1932", "protein_id": "2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_1051-1932", "rna_call_id": "62819", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/301deb91-0736-4cc9-a086-e889a64c133e_0|orf_990-2135", "protein_id": "301deb91-0736-4cc9-a086-e889a64c133e_0|orf_990-2135", "rna_call_id": "57587", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2219", "protein_id": "36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2219", "rna_call_id": "61362", "amino_acid_starts": [ 357 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_1152-2555", "protein_id": "39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_1152-2555", "rna_call_id": "58594", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "protein_id": "3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "rna_call_id": "60423", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_675-1832", "protein_id": "623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_675-1832", "rna_call_id": "63409", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2275", "protein_id": "64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2275", "rna_call_id": "59348", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_1145-2299", "protein_id": "653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_1145-2299", "rna_call_id": "58687", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-1715", "protein_id": "68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-1715", "rna_call_id": "60340", "amino_acid_starts": [ 358 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "protein_id": "694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "rna_call_id": "63757", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "protein_id": "6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "rna_call_id": "63774", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/77602395-6c56-45cb-9756-0a2616eee214_0|orf_131-2446", "protein_id": "77602395-6c56-45cb-9756-0a2616eee214_0|orf_131-2446", "rna_call_id": "60287", "amino_acid_starts": [ 330 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-1331", "protein_id": "7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-1331", "rna_call_id": "62880", "amino_acid_starts": [ 360 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1671", "protein_id": "88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1671", "rna_call_id": "63541", "amino_acid_starts": [ 90 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_674-2644", "protein_id": "907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_674-2644", "rna_call_id": "57737", "amino_acid_starts": [ 205 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_120-2036", "protein_id": "9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_120-2036", "rna_call_id": "58467", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_1049-2461", "protein_id": "a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_1049-2461", "rna_call_id": "61208", "amino_acid_starts": [ 19 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_464-1465", "protein_id": "a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_464-1465", "rna_call_id": "63340", "amino_acid_starts": [ 107 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "protein_id": "a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "rna_call_id": "62473", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_838-2277", "protein_id": "b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_838-2277", "rna_call_id": "59020", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_788-2227", "protein_id": "b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_788-2227", "rna_call_id": "60657", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_782-2221", "protein_id": "b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_782-2221", "rna_call_id": "62068", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-1338", "protein_id": "b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-1338", "rna_call_id": "61919", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_547-2277", "protein_id": "bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_547-2277", "rna_call_id": "59457", "amino_acid_starts": [ 205 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-1312", "protein_id": "becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-1312", "rna_call_id": "59300", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1136-2533", "protein_id": "bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1136-2533", "rna_call_id": "58742", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2233", "protein_id": "c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2233", "rna_call_id": "60313", "amino_acid_starts": [ 359 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1222", "protein_id": "cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1222", "rna_call_id": "59583", "amino_acid_starts": [ 105 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_1055-2212", "protein_id": "d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_1055-2212", "rna_call_id": "62671", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_720-1874", "protein_id": "d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_720-1874", "rna_call_id": "63386", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/db43d41f-c259-4c20-bb37-440614e193cb_0|orf_1118-2542", "protein_id": "db43d41f-c259-4c20-bb37-440614e193cb_0|orf_1118-2542", "rna_call_id": "59499", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_914-2512", "protein_id": "de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_914-2512", "rna_call_id": "58719", "amino_acid_starts": [ 90 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_193-1593", "protein_id": "e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_193-1593", "rna_call_id": "63644", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_963-2390", "protein_id": "ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_963-2390", "rna_call_id": "57820", "amino_acid_starts": [ 108 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_937-2322", "protein_id": "f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_937-2322", "rna_call_id": "58337", "amino_acid_starts": [ 90 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f47d46c2-e2c3-4c6d-9b90-c8b842b403f2_0|orf_128-496", "protein_id": "f47d46c2-e2c3-4c6d-9b90-c8b842b403f2_0|orf_128-496", "rna_call_id": "63738", "amino_acid_starts": [ 14 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-1784", "protein_id": "f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-1784", "rna_call_id": "62520", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10053416|orf_34-2226", "protein_id": "molecule/10053416|orf_34-2226", "rna_call_id": "4672", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10933706|orf_120-2312", "protein_id": "molecule/10933706|orf_120-2312", "rna_call_id": "4625", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/11027571|orf_564-2294", "protein_id": "molecule/11027571|orf_564-2294", "rna_call_id": "4630", "amino_acid_starts": [ 205 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1723051|orf_211-2403", "protein_id": "molecule/1723051|orf_211-2403", "rna_call_id": "4597", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3103885|orf_25-2217", "protein_id": "molecule/3103885|orf_25-2217", "rna_call_id": "4687", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3369384|orf_130-3090", "protein_id": "molecule/3369384|orf_130-3090", "rna_call_id": "4617", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/409052|orf_235-2226", "protein_id": "molecule/409052|orf_235-2226", "rna_call_id": "4586", "amino_acid_starts": [ 292 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4537471|orf_42-2234", "protein_id": "molecule/4537471|orf_42-2234", "rna_call_id": "4668", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4732600|orf_27-2219", "protein_id": "molecule/4732600|orf_27-2219", "rna_call_id": "4686", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4837536|orf_52-1434", "protein_id": "molecule/4837536|orf_52-1434", "rna_call_id": "4698", "amino_acid_starts": [ 90 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5426151|orf_92-1351", "protein_id": "molecule/5426151|orf_92-1351", "rna_call_id": "4644", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5907924|orf_825-2312", "protein_id": "molecule/5907924|orf_825-2312", "rna_call_id": "4675", "amino_acid_starts": [ 108 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6504865|orf_8-1816", "protein_id": "molecule/6504865|orf_8-1816", "rna_call_id": "4717", "amino_acid_starts": [ 14 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7606410|orf_81-2900", "protein_id": "molecule/7606410|orf_81-2900", "rna_call_id": "4653", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8866884|orf_120-2312", "protein_id": "molecule/8866884|orf_120-2312", "rna_call_id": "4623", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9868923|orf_125-2317", "protein_id": "molecule/9868923|orf_125-2317", "rna_call_id": "4622", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10053416|orf_34-1758", "protein_id": "molecule/10053416|orf_34-1758", "rna_call_id": "7803", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/11027571|orf_564-2504", "protein_id": "molecule/11027571|orf_564-2504", "rna_call_id": "7665", "amino_acid_starts": [ 205 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3103885|orf_25-2217", "protein_id": "molecule/3103885|orf_25-2217", "rna_call_id": "7833", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3369384|orf_130-3141", "protein_id": "molecule/3369384|orf_130-3141", "rna_call_id": "7602", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4308644|orf_1093-2019", "protein_id": "molecule/4308644|orf_1093-2019", "rna_call_id": "7498", "amino_acid_starts": [ 108 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4537471|orf_42-2444", "protein_id": "molecule/4537471|orf_42-2444", "rna_call_id": "7741", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4732600|orf_27-2219", "protein_id": "molecule/4732600|orf_27-2219", "rna_call_id": "7832", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4837536|orf_52-1434", "protein_id": "molecule/4837536|orf_52-1434", "rna_call_id": "7884", "amino_acid_starts": [ 90 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5426151|orf_92-1351", "protein_id": "molecule/5426151|orf_92-1351", "rna_call_id": "7685", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6504865|orf_8-1816", "protein_id": "molecule/6504865|orf_8-1816", "rna_call_id": "7924", "amino_acid_starts": [ 14 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7606410|orf_81-2951", "protein_id": "molecule/7606410|orf_81-2951", "rna_call_id": "7719", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8866884|orf_120-2312", "protein_id": "molecule/8866884|orf_120-2312", "rna_call_id": "7644", "amino_acid_starts": [ 359 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9868923|orf_586-1440", "protein_id": "molecule/9868923|orf_586-1440", "rna_call_id": "7641", "amino_acid_starts": [ 205 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1134-2291", "protein_id": "0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1134-2291", "rna_call_id": "23454", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "protein_id": "13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "rna_call_id": "23624", "amino_acid_starts": [ 205 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2019e937-dafa-44a5-8a0f-74b12f012f8d_0|orf_32-2224", "protein_id": "2019e937-dafa-44a5-8a0f-74b12f012f8d_0|orf_32-2224", "rna_call_id": "23555", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "protein_id": "27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "rna_call_id": "23742", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/328fdf8c-216b-4f84-84d7-1becceed54e1_0|orf_36-2228", "protein_id": "328fdf8c-216b-4f84-84d7-1becceed54e1_0|orf_36-2228", "rna_call_id": "23531", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_60-2252", "protein_id": "44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_60-2252", "rna_call_id": "23558", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "protein_id": "4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "rna_call_id": "23579", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "protein_id": "61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "rna_call_id": "23607", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6a47a8ae-71e3-4bd7-90c2-8b6cb8fca016_0|orf_8-2197", "protein_id": "6a47a8ae-71e3-4bd7-90c2-8b6cb8fca016_0|orf_8-2197", "rna_call_id": "23630", "amino_acid_starts": [ 358 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7cfd9cc4-6588-4903-ab50-8e25bf8f2ea0_0|orf_85-2274", "protein_id": "7cfd9cc4-6588-4903-ab50-8e25bf8f2ea0_0|orf_85-2274", "rna_call_id": "23480", "amino_acid_starts": [ 358 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8c3bb791-0a7b-4c9e-ab6e-1cece14e5544_0|orf_210-2402", "protein_id": "8c3bb791-0a7b-4c9e-ab6e-1cece14e5544_0|orf_210-2402", "rna_call_id": "23412", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_212-1651", "protein_id": "9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_212-1651", "rna_call_id": "23694", "amino_acid_starts": [ 108 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_40-1479", "protein_id": "9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_40-1479", "rna_call_id": "23699", "amino_acid_starts": [ 108 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_56-2248", "protein_id": "a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_56-2248", "rna_call_id": "23561", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "protein_id": "a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "rna_call_id": "23409", "amino_acid_starts": [ 358 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1750", "protein_id": "a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1750", "rna_call_id": "23673", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_43-2235", "protein_id": "bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_43-2235", "rna_call_id": "23512", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e5e8f01b-3a29-441b-86f2-80ab74e1617a_0|orf_2-1387", "protein_id": "e5e8f01b-3a29-441b-86f2-80ab74e1617a_0|orf_2-1387", "rna_call_id": "23703", "amino_acid_starts": [ 90 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "protein_id": "e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "rna_call_id": "23605", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_69-2261", "protein_id": "f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_69-2261", "rna_call_id": "23489", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1118-2503", "protein_id": "0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1118-2503", "rna_call_id": "70281", "amino_acid_starts": [ 20 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "protein_id": "13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "rna_call_id": "71125", "amino_acid_starts": [ 205 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "protein_id": "27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "rna_call_id": "71592", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_1079-2497", "protein_id": "44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_1079-2497", "rna_call_id": "70910", "amino_acid_starts": [ 20 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "protein_id": "4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "rna_call_id": "70922", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "protein_id": "61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "rna_call_id": "71023", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8346c39a-c383-4656-81ee-ae77add7737d_0|orf_492-1793", "protein_id": "8346c39a-c383-4656-81ee-ae77add7737d_0|orf_492-1793", "rna_call_id": "70952", "amino_acid_starts": [ 205 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_477-1652", "protein_id": "9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_477-1652", "rna_call_id": "71468", "amino_acid_starts": [ 20 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_95-1480", "protein_id": "9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_95-1480", "rna_call_id": "71498", "amino_acid_starts": [ 90 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_808-2244", "protein_id": "a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_808-2244", "rna_call_id": "70813", "amino_acid_starts": [ 108 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "protein_id": "a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "rna_call_id": "70066", "amino_acid_starts": [ 358 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1993", "protein_id": "a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1993", "rna_call_id": "71349", "amino_acid_starts": [ 14 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "protein_id": "e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "rna_call_id": "70997", "amino_acid_starts": [ 359 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_70-1470", "protein_id": "f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_70-1470", "rna_call_id": "70461", "amino_acid_starts": [ 358 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/21c748c5-2473-407c-a915-453a18e73257_0|orf_75-1232", "protein_id": "21c748c5-2473-407c-a915-453a18e73257_0|orf_75-1232", "rna_call_id": "81537", "amino_acid_starts": [ 14 ] } ] }, { "peptide_id": "BMP1-chr8-22192067.peptide-3", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 8, "sequence": "RISVTPGEKIILNFTTLDLYRSR", "scoring_region": { "sequence": "RISVTPGEKIILNFTTLDLYRSR", "start": 0, "end": 23, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/5328|orf_10-1356", "protein_id": "5328|orf_10-1356", "rna_call_id": "9010", "amino_acid_starts": [ 82 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/03343e0b-44e9-479d-8b9e-077b1ff4bce6_0|orf_890-2329", "protein_id": "03343e0b-44e9-479d-8b9e-077b1ff4bce6_0|orf_890-2329", "rna_call_id": "17371", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/03782511-7341-4f45-8e0c-b988e1fbc6b2_0|orf_139-1578", "protein_id": "03782511-7341-4f45-8e0c-b988e1fbc6b2_0|orf_139-1578", "rna_call_id": "18164", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/050f0f95-9578-44f7-a831-1edb1fbbc2df_0|orf_179-2581", "protein_id": "050f0f95-9578-44f7-a831-1edb1fbbc2df_0|orf_179-2581", "rna_call_id": "17309", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_36-2546", "protein_id": "07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_36-2546", "rna_call_id": "17960", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/08305c0d-a7f3-4e27-a6a4-baa7fd989f5e_0|orf_112-2298", "protein_id": "08305c0d-a7f3-4e27-a6a4-baa7fd989f5e_0|orf_112-2298", "rna_call_id": "17397", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2235", "protein_id": "086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2235", "rna_call_id": "17681", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_174-1376", "protein_id": "0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_174-1376", "rna_call_id": "17314", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2235", "protein_id": "0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2235", "rna_call_id": "17697", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/16daa179-609c-4632-8fee-8ec022a167d7_0|orf_207-1646", "protein_id": "16daa179-609c-4632-8fee-8ec022a167d7_0|orf_207-1646", "rna_call_id": "18162", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_844-2442", "protein_id": "1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_844-2442", "rna_call_id": "17761", "amino_acid_starts": [ 82 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_11-2203", "protein_id": "19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_11-2203", "rna_call_id": "18069", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_15-2975", "protein_id": "2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_15-2975", "rna_call_id": "18055", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/301deb91-0736-4cc9-a086-e889a64c133e_0|orf_233-2425", "protein_id": "301deb91-0736-4cc9-a086-e889a64c133e_0|orf_233-2425", "rna_call_id": "17177", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/354ecfdd-4b90-40e4-a787-fbae766ae267_0|orf_20-1558", "protein_id": "354ecfdd-4b90-40e4-a787-fbae766ae267_0|orf_20-1558", "rna_call_id": "18011", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2225", "protein_id": "36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2225", "rna_call_id": "17788", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_120-2312", "protein_id": "39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_120-2312", "rna_call_id": "17374", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3a866e7c-58ab-4532-b05f-6e26caf052f1_0|orf_10-1818", "protein_id": "3a866e7c-58ab-4532-b05f-6e26caf052f1_0|orf_10-1818", "rna_call_id": "18220", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "protein_id": "3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "rna_call_id": "17708", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3c4bce1d-858d-461f-93aa-7786d4657380_0|orf_823-2262", "protein_id": "3c4bce1d-858d-461f-93aa-7786d4657380_0|orf_823-2262", "rna_call_id": "17778", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/52fd0854-e183-4e8e-b64f-c15523d8c37f_0|orf_82-1980", "protein_id": "52fd0854-e183-4e8e-b64f-c15523d8c37f_0|orf_82-1980", "rna_call_id": "17532", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/580565cf-f3bb-4e9b-93e1-e81a688e523a_0|orf_33-2225", "protein_id": "580565cf-f3bb-4e9b-93e1-e81a688e523a_0|orf_33-2225", "rna_call_id": "17786", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_103-1833", "protein_id": "623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_103-1833", "rna_call_id": "18154", "amino_acid_starts": [ 197 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/62ff7def-32d2-4f70-bc1b-d26fa353a835_0|orf_43-2235", "protein_id": "62ff7def-32d2-4f70-bc1b-d26fa353a835_0|orf_43-2235", "rna_call_id": "17674", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/639c0f9a-2e7d-429e-9d72-5d52f24d7ac7_0|orf_31-2223", "protein_id": "639c0f9a-2e7d-429e-9d72-5d52f24d7ac7_0|orf_31-2223", "rna_call_id": "17844", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2278", "protein_id": "64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2278", "rna_call_id": "17515", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_112-2304", "protein_id": "653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_112-2304", "rna_call_id": "17395", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-2234", "protein_id": "68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-2234", "rna_call_id": "17695", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "protein_id": "694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "rna_call_id": "18211", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "protein_id": "6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "rna_call_id": "18217", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6d505164-2b32-4413-8422-ed774dadd644_0|orf_121-2313", "protein_id": "6d505164-2b32-4413-8422-ed774dadd644_0|orf_121-2313", "rna_call_id": "17361", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_745-2184", "protein_id": "72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_745-2184", "rna_call_id": "18119", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/77602395-6c56-45cb-9756-0a2616eee214_0|orf_43-2235", "protein_id": "77602395-6c56-45cb-9756-0a2616eee214_0|orf_43-2235", "rna_call_id": "17699", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7a5a5289-1b09-4910-87ec-ab94b0f281d6_0|orf_144-2336", "protein_id": "7a5a5289-1b09-4910-87ec-ab94b0f281d6_0|orf_144-2336", "rna_call_id": "17325", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7bfa1f87-74af-4d14-a973-dc2d0f2e33e4_0|orf_229-2373", "protein_id": "7bfa1f87-74af-4d14-a973-dc2d0f2e33e4_0|orf_229-2373", "rna_call_id": "17183", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-2210", "protein_id": "7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-2210", "rna_call_id": "18052", "amino_acid_starts": [ 353 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7f89fc15-b8cc-4c5d-b5d8-7b4a975007ac_0|orf_42-2234", "protein_id": "7f89fc15-b8cc-4c5d-b5d8-7b4a975007ac_0|orf_42-2234", "rna_call_id": "17702", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/80bdc6a2-5ddf-453b-bd2f-cbfe3a7af699_0|orf_33-2225", "protein_id": "80bdc6a2-5ddf-453b-bd2f-cbfe3a7af699_0|orf_33-2225", "rna_call_id": "17797", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8655a9b1-148b-41f2-a759-f3a8f1cf0166_0|orf_2034-3146", "protein_id": "8655a9b1-148b-41f2-a759-f3a8f1cf0166_0|orf_2034-3146", "rna_call_id": "17243", "amino_acid_starts": [ 89 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1428", "protein_id": "88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1428", "rna_call_id": "18176", "amino_acid_starts": [ 82 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_212-2404", "protein_id": "907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_212-2404", "rna_call_id": "17205", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/93ab3460-f131-471c-9c04-e201badab597_0|orf_27-1970", "protein_id": "93ab3460-f131-471c-9c04-e201badab597_0|orf_27-1970", "rna_call_id": "18156", "amino_acid_starts": [ 197 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_121-2541", "protein_id": "9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_121-2541", "rna_call_id": "17357", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_33-2225", "protein_id": "a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_33-2225", "rna_call_id": "17781", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_104-2116", "protein_id": "a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_104-2116", "rna_call_id": "18145", "amino_acid_starts": [ 220 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "protein_id": "a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "rna_call_id": "17981", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_92-2284", "protein_id": "b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_92-2284", "rna_call_id": "17478", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_36-2228", "protein_id": "b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_36-2228", "rna_call_id": "17742", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_28-2220", "protein_id": "b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_28-2220", "rna_call_id": "17906", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-2979", "protein_id": "b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-2979", "rna_call_id": "17885", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b90bed2e-3bcc-491d-a749-ab5b736e522d_0|orf_53-2245", "protein_id": "b90bed2e-3bcc-491d-a749-ab5b736e522d_0|orf_53-2245", "rna_call_id": "17658", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_87-2279", "protein_id": "bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_87-2279", "rna_call_id": "17519", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-2278", "protein_id": "becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-2278", "rna_call_id": "17521", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1135-2292", "protein_id": "bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1135-2292", "rna_call_id": "17439", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2236", "protein_id": "c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2236", "rna_call_id": "17677", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1513", "protein_id": "cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1513", "rna_call_id": "17554", "amino_acid_starts": [ 97 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_19-2211", "protein_id": "d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_19-2211", "rna_call_id": "18020", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_149-1879", "protein_id": "d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_149-1879", "rna_call_id": "18149", "amino_acid_starts": [ 197 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/db43d41f-c259-4c20-bb37-440614e193cb_0|orf_83-2275", "protein_id": "db43d41f-c259-4c20-bb37-440614e193cb_0|orf_83-2275", "rna_call_id": "17545", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dddde5a2-b89a-4f82-82e0-26538a49d5bc_0|orf_83-2485", "protein_id": "dddde5a2-b89a-4f82-82e0-26538a49d5bc_0|orf_83-2485", "rna_call_id": "17540", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_105-2297", "protein_id": "de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_105-2297", "rna_call_id": "17404", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e2df4913-0153-46e6-b242-c72993b0be94_0|orf_32-2224", "protein_id": "e2df4913-0153-46e6-b242-c72993b0be94_0|orf_32-2224", "rna_call_id": "17976", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_194-1351", "protein_id": "e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_194-1351", "rna_call_id": "18196", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/edcdd4f5-54f3-4629-861b-86c4e0b1ab33_0|orf_36-2228", "protein_id": "edcdd4f5-54f3-4629-861b-86c4e0b1ab33_0|orf_36-2228", "rna_call_id": "17746", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_214-2403", "protein_id": "ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_214-2403", "rna_call_id": "17230", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_133-2325", "protein_id": "f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_133-2325", "rna_call_id": "17336", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f5f3c0ef-47a7-4d88-8a34-1cbed051e08f_0|orf_36-2228", "protein_id": "f5f3c0ef-47a7-4d88-8a34-1cbed051e08f_0|orf_36-2228", "rna_call_id": "17753", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-2213", "protein_id": "f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-2213", "rna_call_id": "18009", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ff2fc7a1-7c7e-427d-b34d-127d90001bc0_0|orf_213-2114", "protein_id": "ff2fc7a1-7c7e-427d-b34d-127d90001bc0_0|orf_213-2114", "rna_call_id": "17208", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_789-2189", "protein_id": "07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_789-2189", "rna_call_id": "61369", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2472", "protein_id": "086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2472", "rna_call_id": "60469", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_638-1378", "protein_id": "0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_638-1378", "rna_call_id": "58179", "amino_acid_starts": [ 197 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2232", "protein_id": "0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2232", "rna_call_id": "60245", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_1061-1375", "protein_id": "1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_1061-1375", "rna_call_id": "60808", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_472-1326", "protein_id": "19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_472-1326", "rna_call_id": "62934", "amino_acid_starts": [ 197 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_1051-1932", "protein_id": "2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_1051-1932", "rna_call_id": "62819", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2219", "protein_id": "36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2219", "rna_call_id": "61362", "amino_acid_starts": [ 349 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_1152-2555", "protein_id": "39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_1152-2555", "rna_call_id": "58594", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "protein_id": "3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "rna_call_id": "60423", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_675-1832", "protein_id": "623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_675-1832", "rna_call_id": "63409", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2275", "protein_id": "64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2275", "rna_call_id": "59348", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_1145-2299", "protein_id": "653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_1145-2299", "rna_call_id": "58687", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-1715", "protein_id": "68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-1715", "rna_call_id": "60340", "amino_acid_starts": [ 350 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "protein_id": "694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "rna_call_id": "63757", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "protein_id": "6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "rna_call_id": "63774", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/77602395-6c56-45cb-9756-0a2616eee214_0|orf_131-2446", "protein_id": "77602395-6c56-45cb-9756-0a2616eee214_0|orf_131-2446", "rna_call_id": "60287", "amino_acid_starts": [ 322 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-1331", "protein_id": "7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-1331", "rna_call_id": "62880", "amino_acid_starts": [ 352 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1671", "protein_id": "88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1671", "rna_call_id": "63541", "amino_acid_starts": [ 82 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_674-2644", "protein_id": "907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_674-2644", "rna_call_id": "57737", "amino_acid_starts": [ 197 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_120-2036", "protein_id": "9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_120-2036", "rna_call_id": "58467", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_464-1465", "protein_id": "a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_464-1465", "rna_call_id": "63340", "amino_acid_starts": [ 99 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "protein_id": "a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "rna_call_id": "62473", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_838-2277", "protein_id": "b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_838-2277", "rna_call_id": "59020", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_788-2227", "protein_id": "b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_788-2227", "rna_call_id": "60657", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_782-2221", "protein_id": "b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_782-2221", "rna_call_id": "62068", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-1338", "protein_id": "b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-1338", "rna_call_id": "61919", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_547-2277", "protein_id": "bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_547-2277", "rna_call_id": "59457", "amino_acid_starts": [ 197 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2233", "protein_id": "c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2233", "rna_call_id": "60313", "amino_acid_starts": [ 351 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1222", "protein_id": "cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1222", "rna_call_id": "59583", "amino_acid_starts": [ 97 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_1055-2212", "protein_id": "d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_1055-2212", "rna_call_id": "62671", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/db43d41f-c259-4c20-bb37-440614e193cb_0|orf_1118-2542", "protein_id": "db43d41f-c259-4c20-bb37-440614e193cb_0|orf_1118-2542", "rna_call_id": "59499", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_914-2512", "protein_id": "de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_914-2512", "rna_call_id": "58719", "amino_acid_starts": [ 82 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_193-1593", "protein_id": "e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_193-1593", "rna_call_id": "63644", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_963-2390", "protein_id": "ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_963-2390", "rna_call_id": "57820", "amino_acid_starts": [ 100 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_937-2322", "protein_id": "f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_937-2322", "rna_call_id": "58337", "amino_acid_starts": [ 82 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f47d46c2-e2c3-4c6d-9b90-c8b842b403f2_0|orf_128-496", "protein_id": "f47d46c2-e2c3-4c6d-9b90-c8b842b403f2_0|orf_128-496", "rna_call_id": "63738", "amino_acid_starts": [ 6 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-1784", "protein_id": "f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-1784", "rna_call_id": "62520", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10053416|orf_34-2226", "protein_id": "molecule/10053416|orf_34-2226", "rna_call_id": "4672", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10933706|orf_120-2312", "protein_id": "molecule/10933706|orf_120-2312", "rna_call_id": "4625", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/11027571|orf_564-2294", "protein_id": "molecule/11027571|orf_564-2294", "rna_call_id": "4630", "amino_acid_starts": [ 197 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1723051|orf_211-2403", "protein_id": "molecule/1723051|orf_211-2403", "rna_call_id": "4597", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3103885|orf_25-2217", "protein_id": "molecule/3103885|orf_25-2217", "rna_call_id": "4687", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3369384|orf_130-3090", "protein_id": "molecule/3369384|orf_130-3090", "rna_call_id": "4617", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4537471|orf_42-2234", "protein_id": "molecule/4537471|orf_42-2234", "rna_call_id": "4668", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4732600|orf_27-2219", "protein_id": "molecule/4732600|orf_27-2219", "rna_call_id": "4686", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4837536|orf_52-1434", "protein_id": "molecule/4837536|orf_52-1434", "rna_call_id": "4698", "amino_acid_starts": [ 82 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5426151|orf_92-1351", "protein_id": "molecule/5426151|orf_92-1351", "rna_call_id": "4644", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5907924|orf_825-2312", "protein_id": "molecule/5907924|orf_825-2312", "rna_call_id": "4675", "amino_acid_starts": [ 100 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6504865|orf_8-1816", "protein_id": "molecule/6504865|orf_8-1816", "rna_call_id": "4717", "amino_acid_starts": [ 6 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7606410|orf_81-2900", "protein_id": "molecule/7606410|orf_81-2900", "rna_call_id": "4653", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8866884|orf_120-2312", "protein_id": "molecule/8866884|orf_120-2312", "rna_call_id": "4623", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9868923|orf_125-2317", "protein_id": "molecule/9868923|orf_125-2317", "rna_call_id": "4622", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10053416|orf_34-1758", "protein_id": "molecule/10053416|orf_34-1758", "rna_call_id": "7803", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/11027571|orf_564-2504", "protein_id": "molecule/11027571|orf_564-2504", "rna_call_id": "7665", "amino_acid_starts": [ 197 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3103885|orf_25-2217", "protein_id": "molecule/3103885|orf_25-2217", "rna_call_id": "7833", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3369384|orf_130-3141", "protein_id": "molecule/3369384|orf_130-3141", "rna_call_id": "7602", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4308644|orf_1093-2019", "protein_id": "molecule/4308644|orf_1093-2019", "rna_call_id": "7498", "amino_acid_starts": [ 100 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4537471|orf_42-2444", "protein_id": "molecule/4537471|orf_42-2444", "rna_call_id": "7741", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4732600|orf_27-2219", "protein_id": "molecule/4732600|orf_27-2219", "rna_call_id": "7832", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4837536|orf_52-1434", "protein_id": "molecule/4837536|orf_52-1434", "rna_call_id": "7884", "amino_acid_starts": [ 82 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5426151|orf_92-1351", "protein_id": "molecule/5426151|orf_92-1351", "rna_call_id": "7685", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6504865|orf_8-1816", "protein_id": "molecule/6504865|orf_8-1816", "rna_call_id": "7924", "amino_acid_starts": [ 6 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8866884|orf_120-2312", "protein_id": "molecule/8866884|orf_120-2312", "rna_call_id": "7644", "amino_acid_starts": [ 351 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9868923|orf_586-1440", "protein_id": "molecule/9868923|orf_586-1440", "rna_call_id": "7641", "amino_acid_starts": [ 197 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1134-2291", "protein_id": "0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1134-2291", "rna_call_id": "23454", "amino_acid_starts": [ 6 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "protein_id": "13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "rna_call_id": "23624", "amino_acid_starts": [ 197 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2019e937-dafa-44a5-8a0f-74b12f012f8d_0|orf_32-2224", "protein_id": "2019e937-dafa-44a5-8a0f-74b12f012f8d_0|orf_32-2224", "rna_call_id": "23555", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "protein_id": "27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "rna_call_id": "23742", "amino_acid_starts": [ 6 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/328fdf8c-216b-4f84-84d7-1becceed54e1_0|orf_36-2228", "protein_id": "328fdf8c-216b-4f84-84d7-1becceed54e1_0|orf_36-2228", "rna_call_id": "23531", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_60-2252", "protein_id": "44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_60-2252", "rna_call_id": "23558", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "protein_id": "4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "rna_call_id": "23579", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "protein_id": "61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "rna_call_id": "23607", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6a47a8ae-71e3-4bd7-90c2-8b6cb8fca016_0|orf_8-2197", "protein_id": "6a47a8ae-71e3-4bd7-90c2-8b6cb8fca016_0|orf_8-2197", "rna_call_id": "23630", "amino_acid_starts": [ 350 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7cfd9cc4-6588-4903-ab50-8e25bf8f2ea0_0|orf_85-2274", "protein_id": "7cfd9cc4-6588-4903-ab50-8e25bf8f2ea0_0|orf_85-2274", "rna_call_id": "23480", "amino_acid_starts": [ 350 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8c3bb791-0a7b-4c9e-ab6e-1cece14e5544_0|orf_210-2402", "protein_id": "8c3bb791-0a7b-4c9e-ab6e-1cece14e5544_0|orf_210-2402", "rna_call_id": "23412", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_212-1651", "protein_id": "9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_212-1651", "rna_call_id": "23694", "amino_acid_starts": [ 100 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_40-1479", "protein_id": "9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_40-1479", "rna_call_id": "23699", "amino_acid_starts": [ 100 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_56-2248", "protein_id": "a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_56-2248", "rna_call_id": "23561", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "protein_id": "a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "rna_call_id": "23409", "amino_acid_starts": [ 350 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1750", "protein_id": "a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1750", "rna_call_id": "23673", "amino_acid_starts": [ 6 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_43-2235", "protein_id": "bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_43-2235", "rna_call_id": "23512", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e5e8f01b-3a29-441b-86f2-80ab74e1617a_0|orf_2-1387", "protein_id": "e5e8f01b-3a29-441b-86f2-80ab74e1617a_0|orf_2-1387", "rna_call_id": "23703", "amino_acid_starts": [ 82 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "protein_id": "e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "rna_call_id": "23605", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_69-2261", "protein_id": "f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_69-2261", "rna_call_id": "23489", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1118-2503", "protein_id": "0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1118-2503", "rna_call_id": "70281", "amino_acid_starts": [ 12 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "protein_id": "13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "rna_call_id": "71125", "amino_acid_starts": [ 197 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "protein_id": "27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "rna_call_id": "71592", "amino_acid_starts": [ 6 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_1079-2497", "protein_id": "44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_1079-2497", "rna_call_id": "70910", "amino_acid_starts": [ 12 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "protein_id": "4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "rna_call_id": "70922", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "protein_id": "61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "rna_call_id": "71023", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8346c39a-c383-4656-81ee-ae77add7737d_0|orf_492-1793", "protein_id": "8346c39a-c383-4656-81ee-ae77add7737d_0|orf_492-1793", "rna_call_id": "70952", "amino_acid_starts": [ 197 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_477-1652", "protein_id": "9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_477-1652", "rna_call_id": "71468", "amino_acid_starts": [ 12 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_95-1480", "protein_id": "9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_95-1480", "rna_call_id": "71498", "amino_acid_starts": [ 82 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "protein_id": "a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "rna_call_id": "70066", "amino_acid_starts": [ 350 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1993", "protein_id": "a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1993", "rna_call_id": "71349", "amino_acid_starts": [ 6 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "protein_id": "e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "rna_call_id": "70997", "amino_acid_starts": [ 351 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_70-1470", "protein_id": "f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_70-1470", "rna_call_id": "70461", "amino_acid_starts": [ 350 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/21c748c5-2473-407c-a915-453a18e73257_0|orf_75-1232", "protein_id": "21c748c5-2473-407c-a915-453a18e73257_0|orf_75-1232", "rna_call_id": "81537", "amino_acid_starts": [ 6 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/5328|orf_10-1356", "protein_id": "5328|orf_10-1356", "rna_call_id": "9010", "variant_amino_acid_start": 97 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/03343e0b-44e9-479d-8b9e-077b1ff4bce6_0|orf_890-2329", "protein_id": "03343e0b-44e9-479d-8b9e-077b1ff4bce6_0|orf_890-2329", "rna_call_id": "17371", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/03782511-7341-4f45-8e0c-b988e1fbc6b2_0|orf_139-1578", "protein_id": "03782511-7341-4f45-8e0c-b988e1fbc6b2_0|orf_139-1578", "rna_call_id": "18164", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/050f0f95-9578-44f7-a831-1edb1fbbc2df_0|orf_179-2581", "protein_id": "050f0f95-9578-44f7-a831-1edb1fbbc2df_0|orf_179-2581", "rna_call_id": "17309", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_36-2546", "protein_id": "07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_36-2546", "rna_call_id": "17960", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/08305c0d-a7f3-4e27-a6a4-baa7fd989f5e_0|orf_112-2298", "protein_id": "08305c0d-a7f3-4e27-a6a4-baa7fd989f5e_0|orf_112-2298", "rna_call_id": "17397", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2235", "protein_id": "086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2235", "rna_call_id": "17681", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_174-1376", "protein_id": "0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_174-1376", "rna_call_id": "17314", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2235", "protein_id": "0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2235", "rna_call_id": "17697", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/16daa179-609c-4632-8fee-8ec022a167d7_0|orf_207-1646", "protein_id": "16daa179-609c-4632-8fee-8ec022a167d7_0|orf_207-1646", "rna_call_id": "18162", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_844-2442", "protein_id": "1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_844-2442", "rna_call_id": "17761", "variant_amino_acid_start": 97 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_11-2203", "protein_id": "19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_11-2203", "rna_call_id": "18069", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_15-2975", "protein_id": "2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_15-2975", "rna_call_id": "18055", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/301deb91-0736-4cc9-a086-e889a64c133e_0|orf_233-2425", "protein_id": "301deb91-0736-4cc9-a086-e889a64c133e_0|orf_233-2425", "rna_call_id": "17177", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/354ecfdd-4b90-40e4-a787-fbae766ae267_0|orf_20-1558", "protein_id": "354ecfdd-4b90-40e4-a787-fbae766ae267_0|orf_20-1558", "rna_call_id": "18011", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2225", "protein_id": "36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2225", "rna_call_id": "17788", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_120-2312", "protein_id": "39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_120-2312", "rna_call_id": "17374", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3a866e7c-58ab-4532-b05f-6e26caf052f1_0|orf_10-1818", "protein_id": "3a866e7c-58ab-4532-b05f-6e26caf052f1_0|orf_10-1818", "rna_call_id": "18220", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "protein_id": "3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "rna_call_id": "17708", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/3c4bce1d-858d-461f-93aa-7786d4657380_0|orf_823-2262", "protein_id": "3c4bce1d-858d-461f-93aa-7786d4657380_0|orf_823-2262", "rna_call_id": "17778", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/52fd0854-e183-4e8e-b64f-c15523d8c37f_0|orf_82-1980", "protein_id": "52fd0854-e183-4e8e-b64f-c15523d8c37f_0|orf_82-1980", "rna_call_id": "17532", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/580565cf-f3bb-4e9b-93e1-e81a688e523a_0|orf_33-2225", "protein_id": "580565cf-f3bb-4e9b-93e1-e81a688e523a_0|orf_33-2225", "rna_call_id": "17786", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_103-1833", "protein_id": "623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_103-1833", "rna_call_id": "18154", "variant_amino_acid_start": 212 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/62ff7def-32d2-4f70-bc1b-d26fa353a835_0|orf_43-2235", "protein_id": "62ff7def-32d2-4f70-bc1b-d26fa353a835_0|orf_43-2235", "rna_call_id": "17674", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/639c0f9a-2e7d-429e-9d72-5d52f24d7ac7_0|orf_31-2223", "protein_id": "639c0f9a-2e7d-429e-9d72-5d52f24d7ac7_0|orf_31-2223", "rna_call_id": "17844", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2278", "protein_id": "64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2278", "rna_call_id": "17515", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_112-2304", "protein_id": "653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_112-2304", "rna_call_id": "17395", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-2234", "protein_id": "68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-2234", "rna_call_id": "17695", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "protein_id": "694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "rna_call_id": "18211", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "protein_id": "6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "rna_call_id": "18217", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6d505164-2b32-4413-8422-ed774dadd644_0|orf_121-2313", "protein_id": "6d505164-2b32-4413-8422-ed774dadd644_0|orf_121-2313", "rna_call_id": "17361", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_745-2184", "protein_id": "72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_745-2184", "rna_call_id": "18119", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/75bae4d7-f6a7-4a59-b0e7-c5bb8343831f_0|orf_132-1340", "protein_id": "75bae4d7-f6a7-4a59-b0e7-c5bb8343831f_0|orf_132-1340", "rna_call_id": "17345", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/77602395-6c56-45cb-9756-0a2616eee214_0|orf_43-2235", "protein_id": "77602395-6c56-45cb-9756-0a2616eee214_0|orf_43-2235", "rna_call_id": "17699", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7a5a5289-1b09-4910-87ec-ab94b0f281d6_0|orf_144-2336", "protein_id": "7a5a5289-1b09-4910-87ec-ab94b0f281d6_0|orf_144-2336", "rna_call_id": "17325", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7bfa1f87-74af-4d14-a973-dc2d0f2e33e4_0|orf_229-2373", "protein_id": "7bfa1f87-74af-4d14-a973-dc2d0f2e33e4_0|orf_229-2373", "rna_call_id": "17183", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-2210", "protein_id": "7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-2210", "rna_call_id": "18052", "variant_amino_acid_start": 368 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/7f89fc15-b8cc-4c5d-b5d8-7b4a975007ac_0|orf_42-2234", "protein_id": "7f89fc15-b8cc-4c5d-b5d8-7b4a975007ac_0|orf_42-2234", "rna_call_id": "17702", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/80bdc6a2-5ddf-453b-bd2f-cbfe3a7af699_0|orf_33-2225", "protein_id": "80bdc6a2-5ddf-453b-bd2f-cbfe3a7af699_0|orf_33-2225", "rna_call_id": "17797", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/8655a9b1-148b-41f2-a759-f3a8f1cf0166_0|orf_2034-3146", "protein_id": "8655a9b1-148b-41f2-a759-f3a8f1cf0166_0|orf_2034-3146", "rna_call_id": "17243", "variant_amino_acid_start": 104 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1428", "protein_id": "88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1428", "rna_call_id": "18176", "variant_amino_acid_start": 97 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_212-2404", "protein_id": "907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_212-2404", "rna_call_id": "17205", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/93ab3460-f131-471c-9c04-e201badab597_0|orf_27-1970", "protein_id": "93ab3460-f131-471c-9c04-e201badab597_0|orf_27-1970", "rna_call_id": "18156", "variant_amino_acid_start": 212 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_121-2541", "protein_id": "9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_121-2541", "rna_call_id": "17357", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_33-2225", "protein_id": "a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_33-2225", "rna_call_id": "17781", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_104-2116", "protein_id": "a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_104-2116", "rna_call_id": "18145", "variant_amino_acid_start": 235 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "protein_id": "a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "rna_call_id": "17981", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_92-2284", "protein_id": "b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_92-2284", "rna_call_id": "17478", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_36-2228", "protein_id": "b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_36-2228", "rna_call_id": "17742", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_28-2220", "protein_id": "b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_28-2220", "rna_call_id": "17906", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-2979", "protein_id": "b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-2979", "rna_call_id": "17885", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/b90bed2e-3bcc-491d-a749-ab5b736e522d_0|orf_53-2245", "protein_id": "b90bed2e-3bcc-491d-a749-ab5b736e522d_0|orf_53-2245", "rna_call_id": "17658", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_87-2279", "protein_id": "bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_87-2279", "rna_call_id": "17519", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-2278", "protein_id": "becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-2278", "rna_call_id": "17521", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1135-2292", "protein_id": "bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1135-2292", "rna_call_id": "17439", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2236", "protein_id": "c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2236", "rna_call_id": "17677", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1513", "protein_id": "cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1513", "rna_call_id": "17554", "variant_amino_acid_start": 112 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_19-2211", "protein_id": "d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_19-2211", "rna_call_id": "18020", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_149-1879", "protein_id": "d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_149-1879", "rna_call_id": "18149", "variant_amino_acid_start": 212 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/db43d41f-c259-4c20-bb37-440614e193cb_0|orf_83-2275", "protein_id": "db43d41f-c259-4c20-bb37-440614e193cb_0|orf_83-2275", "rna_call_id": "17545", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/dddde5a2-b89a-4f82-82e0-26538a49d5bc_0|orf_83-2485", "protein_id": "dddde5a2-b89a-4f82-82e0-26538a49d5bc_0|orf_83-2485", "rna_call_id": "17540", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_105-2297", "protein_id": "de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_105-2297", "rna_call_id": "17404", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e2df4913-0153-46e6-b242-c72993b0be94_0|orf_32-2224", "protein_id": "e2df4913-0153-46e6-b242-c72993b0be94_0|orf_32-2224", "rna_call_id": "17976", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_194-1351", "protein_id": "e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_194-1351", "rna_call_id": "18196", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/edcdd4f5-54f3-4629-861b-86c4e0b1ab33_0|orf_36-2228", "protein_id": "edcdd4f5-54f3-4629-861b-86c4e0b1ab33_0|orf_36-2228", "rna_call_id": "17746", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_214-2403", "protein_id": "ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_214-2403", "rna_call_id": "17230", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_133-2325", "protein_id": "f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_133-2325", "rna_call_id": "17336", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f5f3c0ef-47a7-4d88-8a34-1cbed051e08f_0|orf_36-2228", "protein_id": "f5f3c0ef-47a7-4d88-8a34-1cbed051e08f_0|orf_36-2228", "rna_call_id": "17753", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-2213", "protein_id": "f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-2213", "rna_call_id": "18009", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/ff2fc7a1-7c7e-427d-b34d-127d90001bc0_0|orf_213-2114", "protein_id": "ff2fc7a1-7c7e-427d-b34d-127d90001bc0_0|orf_213-2114", "rna_call_id": "17208", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_789-2189", "protein_id": "07b08431-3373-411a-b92d-eb3bb7f0a7c2_0|orf_789-2189", "rna_call_id": "61369", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2472", "protein_id": "086400c9-f6bf-4e62-9cea-47f289c8a7fc_0|orf_43-2472", "rna_call_id": "60469", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_638-1378", "protein_id": "0ba62054-273f-42c1-a16c-c4e7f524aa2a_0|orf_638-1378", "rna_call_id": "58179", "variant_amino_acid_start": 212 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2232", "protein_id": "0e1852ad-79bf-432a-a518-afb855b9a8fb_0|orf_43-2232", "rna_call_id": "60245", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/16a794dc-22f5-44f3-be2b-4a81af7366e5_0|orf_89-277", "protein_id": "16a794dc-22f5-44f3-be2b-4a81af7366e5_0|orf_89-277", "rna_call_id": "63753", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_1061-1375", "protein_id": "1881a9be-a5fa-44f4-954a-9202a090fa5f_0|orf_1061-1375", "rna_call_id": "60808", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_472-1326", "protein_id": "19a49da6-d93a-4328-80a8-0f7252cb45bd_0|orf_472-1326", "rna_call_id": "62934", "variant_amino_acid_start": 212 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_1051-1932", "protein_id": "2c1c5bdb-e5d8-445d-9ed4-ee26c55b71cc_0|orf_1051-1932", "rna_call_id": "62819", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/301deb91-0736-4cc9-a086-e889a64c133e_0|orf_990-2135", "protein_id": "301deb91-0736-4cc9-a086-e889a64c133e_0|orf_990-2135", "rna_call_id": "57587", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2219", "protein_id": "36732cef-82ad-4d39-bd52-cbdf8aa8a118_0|orf_33-2219", "rna_call_id": "61362", "variant_amino_acid_start": 364 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_1152-2555", "protein_id": "39e61a84-fa9e-447b-9f47-ab0a0db81a0f_0|orf_1152-2555", "rna_call_id": "58594", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "protein_id": "3c07dcec-6348-4572-917b-62b557a5bdf1_0|orf_43-1767", "rna_call_id": "60423", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_675-1832", "protein_id": "623c1c4f-db08-489d-9a4e-cf5ed2752c8d_0|orf_675-1832", "rna_call_id": "63409", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2275", "protein_id": "64ed5fc7-09df-4052-bed3-3d150b14a209_0|orf_86-2275", "rna_call_id": "59348", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_1145-2299", "protein_id": "653115b7-8cda-4407-a0dd-c70c96c14518_0|orf_1145-2299", "rna_call_id": "58687", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-1715", "protein_id": "68fd69e7-88bb-4ff0-9800-80ee008be65b_0|orf_42-1715", "rna_call_id": "60340", "variant_amino_acid_start": 365 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "protein_id": "694cdd94-7e50-4d8a-9c83-af051179d617_0|orf_106-1263", "rna_call_id": "63757", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "protein_id": "6ba3456b-58a1-41fe-a33c-b782802a5776_0|orf_63-1220", "rna_call_id": "63774", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_1008-1985", "protein_id": "72afd278-24f7-4779-86b7-4dc9a607935c_0|orf_1008-1985", "rna_call_id": "63077", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/75bae4d7-f6a7-4a59-b0e7-c5bb8343831f_0|orf_464-1339", "protein_id": "75bae4d7-f6a7-4a59-b0e7-c5bb8343831f_0|orf_464-1339", "rna_call_id": "58360", "variant_amino_acid_start": 255 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/77602395-6c56-45cb-9756-0a2616eee214_0|orf_131-2446", "protein_id": "77602395-6c56-45cb-9756-0a2616eee214_0|orf_131-2446", "rna_call_id": "60287", "variant_amino_acid_start": 337 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-1331", "protein_id": "7e371884-d2dc-4aa0-9a57-a65b3d66e461_0|orf_12-1331", "rna_call_id": "62880", "variant_amino_acid_start": 367 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1671", "protein_id": "88a746a7-9948-4ae4-bf36-80cfd8f85969_0|orf_43-1671", "rna_call_id": "63541", "variant_amino_acid_start": 97 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_674-2644", "protein_id": "907ce335-4fef-4b37-b39e-f63ef15621ea_0|orf_674-2644", "rna_call_id": "57737", "variant_amino_acid_start": 212 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_120-2036", "protein_id": "9a873a81-79b6-4524-9843-ca5736e8eb7f_0|orf_120-2036", "rna_call_id": "58467", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_1049-2461", "protein_id": "a50703f9-bd19-4eec-b092-cfd9e4ed3a61_0|orf_1049-2461", "rna_call_id": "61208", "variant_amino_acid_start": 26 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_464-1465", "protein_id": "a7357b2c-05df-4c00-a1ec-d2ddde158bc1_1|orf_464-1465", "rna_call_id": "63340", "variant_amino_acid_start": 114 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "protein_id": "a93cc68d-5006-4edd-b775-870da1501d96_0|orf_23-2215", "rna_call_id": "62473", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_838-2277", "protein_id": "b1b9e05d-af4e-4b47-a8b6-3fd617325957_0|orf_838-2277", "rna_call_id": "59020", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_788-2227", "protein_id": "b28a7485-1b1e-42b4-ba58-2577351ec686_0|orf_788-2227", "rna_call_id": "60657", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_782-2221", "protein_id": "b3d9e7c7-22e7-4a53-89d5-41ffc3464b34_0|orf_782-2221", "rna_call_id": "62068", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-1338", "protein_id": "b5fee2dc-70d9-4a33-b6a8-ade260d6ffcf_0|orf_28-1338", "rna_call_id": "61919", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_547-2277", "protein_id": "bd7696e4-5df9-49c4-a09a-3301c4b0383e_0|orf_547-2277", "rna_call_id": "59457", "variant_amino_acid_start": 212 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-1312", "protein_id": "becfeba8-bd7d-4cee-af79-8dbd269ab93f_0|orf_86-1312", "rna_call_id": "59300", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1136-2533", "protein_id": "bf2984ab-2abd-4802-8324-833ef3aefb43_0|orf_1136-2533", "rna_call_id": "58742", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2233", "protein_id": "c838dea2-aee5-45fd-9f43-bc941f96a1a4_0|orf_44-2233", "rna_call_id": "60313", "variant_amino_acid_start": 366 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1222", "protein_id": "cd2d0d57-fb57-4842-9998-3935cbe1b7e1_0|orf_83-1222", "rna_call_id": "59583", "variant_amino_acid_start": 112 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_1055-2212", "protein_id": "d16c998c-f0e6-4616-9a22-e0e88b9e8fa2_0|orf_1055-2212", "rna_call_id": "62671", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_720-1874", "protein_id": "d80eb15a-f392-4849-a2b1-fc9d9f1ec097_0|orf_720-1874", "rna_call_id": "63386", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/db43d41f-c259-4c20-bb37-440614e193cb_0|orf_1118-2542", "protein_id": "db43d41f-c259-4c20-bb37-440614e193cb_0|orf_1118-2542", "rna_call_id": "59499", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_914-2512", "protein_id": "de785ab2-258a-4c7b-a439-819a3d8dfae7_0|orf_914-2512", "rna_call_id": "58719", "variant_amino_acid_start": 97 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_193-1593", "protein_id": "e3c28d58-6e91-4ebd-84b7-5e121b7180cf_0|orf_193-1593", "rna_call_id": "63644", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_963-2390", "protein_id": "ef2e6961-edea-4eab-a678-bf2a0627deb2_0|orf_963-2390", "rna_call_id": "57820", "variant_amino_acid_start": 115 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_937-2322", "protein_id": "f2fa5c15-e02c-4817-8bee-6818685fa4d4_1|orf_937-2322", "rna_call_id": "58337", "variant_amino_acid_start": 97 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f47d46c2-e2c3-4c6d-9b90-c8b842b403f2_0|orf_128-496", "protein_id": "f47d46c2-e2c3-4c6d-9b90-c8b842b403f2_0|orf_128-496", "rna_call_id": "63738", "variant_amino_acid_start": 21 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-1784", "protein_id": "f97e20b0-8503-437b-bfac-dfe1a59afbce_0|orf_21-1784", "rna_call_id": "62520", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10053416|orf_34-2226", "protein_id": "molecule/10053416|orf_34-2226", "rna_call_id": "4672", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/10933706|orf_120-2312", "protein_id": "molecule/10933706|orf_120-2312", "rna_call_id": "4625", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/11027571|orf_564-2294", "protein_id": "molecule/11027571|orf_564-2294", "rna_call_id": "4630", "variant_amino_acid_start": 212 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/1723051|orf_211-2403", "protein_id": "molecule/1723051|orf_211-2403", "rna_call_id": "4597", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3103885|orf_25-2217", "protein_id": "molecule/3103885|orf_25-2217", "rna_call_id": "4687", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/3369384|orf_130-3090", "protein_id": "molecule/3369384|orf_130-3090", "rna_call_id": "4617", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/409052|orf_235-2226", "protein_id": "molecule/409052|orf_235-2226", "rna_call_id": "4586", "variant_amino_acid_start": 299 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4537471|orf_42-2234", "protein_id": "molecule/4537471|orf_42-2234", "rna_call_id": "4668", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4732600|orf_27-2219", "protein_id": "molecule/4732600|orf_27-2219", "rna_call_id": "4686", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/4837536|orf_52-1434", "protein_id": "molecule/4837536|orf_52-1434", "rna_call_id": "4698", "variant_amino_acid_start": 97 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5426151|orf_92-1351", "protein_id": "molecule/5426151|orf_92-1351", "rna_call_id": "4644", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/5907924|orf_825-2312", "protein_id": "molecule/5907924|orf_825-2312", "rna_call_id": "4675", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/6504865|orf_8-1816", "protein_id": "molecule/6504865|orf_8-1816", "rna_call_id": "4717", "variant_amino_acid_start": 21 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/7606410|orf_81-2900", "protein_id": "molecule/7606410|orf_81-2900", "rna_call_id": "4653", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/8866884|orf_120-2312", "protein_id": "molecule/8866884|orf_120-2312", "rna_call_id": "4623", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "corrected", "reconstruction_id": "T1-PacBio/corrected/molecule/9868923|orf_125-2317", "protein_id": "molecule/9868923|orf_125-2317", "rna_call_id": "4622", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/10053416|orf_34-1758", "protein_id": "molecule/10053416|orf_34-1758", "rna_call_id": "7803", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/11027571|orf_564-2504", "protein_id": "molecule/11027571|orf_564-2504", "rna_call_id": "7665", "variant_amino_acid_start": 212 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3103885|orf_25-2217", "protein_id": "molecule/3103885|orf_25-2217", "rna_call_id": "7833", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/3369384|orf_130-3141", "protein_id": "molecule/3369384|orf_130-3141", "rna_call_id": "7602", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4308644|orf_1093-2019", "protein_id": "molecule/4308644|orf_1093-2019", "rna_call_id": "7498", "variant_amino_acid_start": 115 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4537471|orf_42-2444", "protein_id": "molecule/4537471|orf_42-2444", "rna_call_id": "7741", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4732600|orf_27-2219", "protein_id": "molecule/4732600|orf_27-2219", "rna_call_id": "7832", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/4837536|orf_52-1434", "protein_id": "molecule/4837536|orf_52-1434", "rna_call_id": "7884", "variant_amino_acid_start": 97 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5426151|orf_92-1351", "protein_id": "molecule/5426151|orf_92-1351", "rna_call_id": "7685", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/6504865|orf_8-1816", "protein_id": "molecule/6504865|orf_8-1816", "rna_call_id": "7924", "variant_amino_acid_start": 21 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/7606410|orf_81-2951", "protein_id": "molecule/7606410|orf_81-2951", "rna_call_id": "7719", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/8866884|orf_120-2312", "protein_id": "molecule/8866884|orf_120-2312", "rna_call_id": "7644", "variant_amino_acid_start": 366 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9868923|orf_586-1440", "protein_id": "molecule/9868923|orf_586-1440", "rna_call_id": "7641", "variant_amino_acid_start": 212 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1134-2291", "protein_id": "0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1134-2291", "rna_call_id": "23454", "variant_amino_acid_start": 21 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "protein_id": "13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "rna_call_id": "23624", "variant_amino_acid_start": 212 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/2019e937-dafa-44a5-8a0f-74b12f012f8d_0|orf_32-2224", "protein_id": "2019e937-dafa-44a5-8a0f-74b12f012f8d_0|orf_32-2224", "rna_call_id": "23555", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "protein_id": "27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "rna_call_id": "23742", "variant_amino_acid_start": 21 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/328fdf8c-216b-4f84-84d7-1becceed54e1_0|orf_36-2228", "protein_id": "328fdf8c-216b-4f84-84d7-1becceed54e1_0|orf_36-2228", "rna_call_id": "23531", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_60-2252", "protein_id": "44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_60-2252", "rna_call_id": "23558", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "protein_id": "4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "rna_call_id": "23579", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "protein_id": "61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "rna_call_id": "23607", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/6a47a8ae-71e3-4bd7-90c2-8b6cb8fca016_0|orf_8-2197", "protein_id": "6a47a8ae-71e3-4bd7-90c2-8b6cb8fca016_0|orf_8-2197", "rna_call_id": "23630", "variant_amino_acid_start": 365 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/7cfd9cc4-6588-4903-ab50-8e25bf8f2ea0_0|orf_85-2274", "protein_id": "7cfd9cc4-6588-4903-ab50-8e25bf8f2ea0_0|orf_85-2274", "rna_call_id": "23480", "variant_amino_acid_start": 365 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/8c3bb791-0a7b-4c9e-ab6e-1cece14e5544_0|orf_210-2402", "protein_id": "8c3bb791-0a7b-4c9e-ab6e-1cece14e5544_0|orf_210-2402", "rna_call_id": "23412", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_212-1651", "protein_id": "9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_212-1651", "rna_call_id": "23694", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_40-1479", "protein_id": "9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_40-1479", "rna_call_id": "23699", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_56-2248", "protein_id": "a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_56-2248", "rna_call_id": "23561", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "protein_id": "a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "rna_call_id": "23409", "variant_amino_acid_start": 365 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1750", "protein_id": "a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1750", "rna_call_id": "23673", "variant_amino_acid_start": 21 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_43-2235", "protein_id": "bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_43-2235", "rna_call_id": "23512", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e5e8f01b-3a29-441b-86f2-80ab74e1617a_0|orf_2-1387", "protein_id": "e5e8f01b-3a29-441b-86f2-80ab74e1617a_0|orf_2-1387", "rna_call_id": "23703", "variant_amino_acid_start": 97 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "protein_id": "e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "rna_call_id": "23605", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_69-2261", "protein_id": "f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_69-2261", "rna_call_id": "23489", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1118-2503", "protein_id": "0963723b-44fc-4f7d-ab6b-06f3a063d2ba_0|orf_1118-2503", "rna_call_id": "70281", "variant_amino_acid_start": 27 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "protein_id": "13a45d7f-80c8-4c08-9499-316fc7a516c8_0|orf_475-2205", "rna_call_id": "71125", "variant_amino_acid_start": 212 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "protein_id": "27ce3dff-dbac-433b-b000-99a31b695081_0|orf_210-1367", "rna_call_id": "71592", "variant_amino_acid_start": 21 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_1079-2497", "protein_id": "44bb9b0e-494f-486d-810c-7a443d2bdc5f_0|orf_1079-2497", "rna_call_id": "70910", "variant_amino_acid_start": 27 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "protein_id": "4f2afd1c-0b64-482d-b827-8d5cfdcd892c_0|orf_36-2441", "rna_call_id": "70922", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "protein_id": "61f6d706-31a8-418c-81d7-c176723f10e6_0|orf_24-2216", "rna_call_id": "71023", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8346c39a-c383-4656-81ee-ae77add7737d_0|orf_492-1793", "protein_id": "8346c39a-c383-4656-81ee-ae77add7737d_0|orf_492-1793", "rna_call_id": "70952", "variant_amino_acid_start": 212 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_477-1652", "protein_id": "9667006a-5076-4926-bd1a-44b249a3a75e_0|orf_477-1652", "rna_call_id": "71468", "variant_amino_acid_start": 27 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_95-1480", "protein_id": "9af67fba-6127-4cfe-9441-2b16708e1603_0|orf_95-1480", "rna_call_id": "71498", "variant_amino_acid_start": 97 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_808-2244", "protein_id": "a20c2fe1-d794-4143-bc9b-40a11f08f2a5_0|orf_808-2244", "rna_call_id": "70813", "variant_amino_acid_start": 115 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "protein_id": "a4c86560-cb27-4a19-ab97-1f9a4150a270_0|orf_209-2398", "rna_call_id": "70066", "variant_amino_acid_start": 365 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1993", "protein_id": "a93aa0f8-dc12-4490-90ee-8a8316717919_0|orf_593-1993", "rna_call_id": "71349", "variant_amino_acid_start": 21 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_438-1253", "protein_id": "bdf86ebe-86aa-4d68-b790-64cafe91f3b2_0|orf_438-1253", "rna_call_id": "70600", "variant_amino_acid_start": 235 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "protein_id": "e5f5ae84-6f57-477a-be74-925fecd685bf_0|orf_25-2217", "rna_call_id": "70997", "variant_amino_acid_start": 366 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_70-1470", "protein_id": "f536eaeb-8612-4c62-a7ec-f81112ad9999_0|orf_70-1470", "rna_call_id": "70461", "variant_amino_acid_start": 365 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/21c748c5-2473-407c-a915-453a18e73257_0|orf_75-1232", "protein_id": "21c748c5-2473-407c-a915-453a18e73257_0|orf_75-1232", "rna_call_id": "81537", "variant_amino_acid_start": 21 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 78 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 77 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 20 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 20 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 25 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 25 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 1 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 116, "alt_reads": 0, "total_reads": 116, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 425, "alt_reads": 1, "total_reads": 426, "vaf": 0.0023, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 146, "alt_reads": 40, "total_reads": 187, "vaf": 0.2139, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 66, "alt_reads": 0, "total_reads": 66, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 145, "alt_reads": 39, "total_reads": 185, "vaf": 0.2108, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 64, "alt_reads": 21, "total_reads": 85, "vaf": 0.2471, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 123, "alt_reads": 41, "total_reads": 164, "vaf": 0.25, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 69, "alt_reads": 24, "total_reads": 93, "vaf": 0.2581, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 33, "alt_reads": 5, "total_reads": 39, "vaf": 0.1282, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 64, "alt_reads": 15, "total_reads": 79, "vaf": 0.1899, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 13, "alt_reads": 1, "total_reads": 14, "vaf": 0.0714, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 7, "alt_reads": 0, "total_reads": 7, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 236, "alt_reads": 79, "total_reads": 316, "vaf": 0.25, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 88, "alt_reads": 25, "total_reads": 114, "vaf": 0.2193, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 12, "alt_reads": 1, "total_reads": 13, "vaf": 0.0769, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 79, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 79, "category": "multiple", "sid_alt_reads": 79, "exacto_raw_rnas": 77 }, "T2-ONT": { "max_alt_reads": 25, "category": "multiple", "sid_alt_reads": 25, "exacto_raw_rnas": 25 }, "T3-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T1-PacBio": { "max_alt_reads": 20, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 20 }, "T2-ILMN": { "max_alt_reads": 41, "category": "multiple", "sid_alt_reads": 41, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "VPS13B-chr8-99861923", "gene": "VPS13B", "chrom": "chr8", "pos": 99861923, "ref": "C", "alt": "T", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ser3756Phe", "consequence": "missense_variant", "vaccines": [ "CeGaT", "JLF V3" ], "published_vaccine_peptides": [ { "peptide_id": "VPS13B-chr8-99861923.peptide-1", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "RQLPESLGEGLRQGLFRLGIS", "scoring_region": { "sequence": "RQLPESLGEGLRQGLFRLGIS", "start": 0, "end": 21, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/6963|orf_45-1589", "protein_id": "6963|orf_45-1589", "rna_call_id": "9389", "amino_acid_starts": [ 477 ] }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/7615|orf_45-1589", "protein_id": "7615|orf_45-1589", "rna_call_id": "27909", "amino_acid_starts": [ 477 ] } ] }, { "peptide_id": "VPS13B-chr8-99861923.peptide-2", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "GEGLRQGLFRLGISLLGAIA", "scoring_region": { "sequence": "GEGLRQGLFRLGISLLGAIA", "start": 0, "end": 20, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "assembly-ms1", "reconstruction_id": "T1-ONT/assembly-ms1/6963|orf_45-1589", "protein_id": "6963|orf_45-1589", "rna_call_id": "9389", "variant_amino_acid_start": 492 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "reconstruction_id": "T1-ONT/assembly-permissive/7615|orf_45-1589", "protein_id": "7615|orf_45-1589", "rna_call_id": "27909", "variant_amino_acid_start": 492 }, { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/828547de-dda4-4188-b1ff-f67e1cb93f62_0|orf_1541-1864", "protein_id": "828547de-dda4-4188-b1ff-f67e1cb93f62_0|orf_1541-1864", "rna_call_id": "18500", "variant_amino_acid_start": 56 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/828547de-dda4-4188-b1ff-f67e1cb93f62_0|orf_1541-1864", "protein_id": "828547de-dda4-4188-b1ff-f67e1cb93f62_0|orf_1541-1864", "rna_call_id": "64317", "variant_amino_acid_start": 56 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 2 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 3 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 2 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 16, "alt_reads": 2, "total_reads": 18, "vaf": 0.1111, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 76, "alt_reads": 0, "total_reads": 76, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 46, "alt_reads": 10, "total_reads": 56, "vaf": 0.1786, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 4, "alt_reads": 1, "total_reads": 5, "vaf": 0.2, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 46, "alt_reads": 10, "total_reads": 56, "vaf": 0.1786, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 18, "alt_reads": 0, "total_reads": 18, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 28, "alt_reads": 0, "total_reads": 28, "vaf": 0.0, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 16, "alt_reads": 0, "total_reads": 16, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 15, "alt_reads": 0, "total_reads": 15, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 13, "alt_reads": 3, "total_reads": 16, "vaf": 0.1875, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 9, "alt_reads": 0, "total_reads": 9, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 9, "alt_reads": 3, "total_reads": 12, "vaf": 0.25, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 18, "alt_reads": 2, "total_reads": 20, "vaf": 0.1, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 33, "alt_reads": 0, "total_reads": 33, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 3, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 3, "category": "multiple", "sid_alt_reads": 3, "exacto_raw_rnas": 3 }, "T2-ONT": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": 2, "exacto_raw_rnas": 2 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "GLIS3-chr9-3856149", "gene": "GLIS3", "chrom": "chr9", "pos": 3856149, "ref": "CTGATGTGG", "alt": "C", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ser775fs", "consequence": "frameshift_variant", "vaccines": [ "JLF V3" ], "published_vaccine_peptides": [ { "peptide_id": "GLIS3-chr9-3856149.peptide-1", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "QPPESSSSFFNTAKNTASLYPAAIRFTPEVLSARNKLFFSTKWYPCPWILWAAAEVLSPTLPRFPENCAACQLLQCGAFV", "scoring_region": { "sequence": "QPPESSSSFFNTAKNTASLYPAAIRFTPEVLSARNKLFFSTKWYPCPWILWAAAEVLSPTLPRFPENCAACQLLQCGAFV", "start": 0, "end": 80, "terminal_tags": [] }, "matches": [] } ], "candidate_outcome": "rna_only", "residue_confirmed": null, "reconstructed_candidates": [], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 1 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 0 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 106, "alt_reads": 0, "total_reads": 112, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 76, "alt_reads": 0, "total_reads": 78, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 52, "alt_reads": 17, "total_reads": 77, "vaf": 0.2208, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 12, "alt_reads": 0, "total_reads": 13, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 51, "alt_reads": 17, "total_reads": 76, "vaf": 0.2237, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 3, "alt_reads": 0, "total_reads": 4, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 2, "alt_reads": 0, "total_reads": 2, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1, "alt_reads": 1, "total_reads": 2, "vaf": 0.5, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1, "alt_reads": 0, "total_reads": 1, "vaf": 0.0, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 1, "category": "single", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 0 }, "T3-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T1-PacBio": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": null, "exacto_raw_rnas": 1 }, "T2-ILMN": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "SMC5-chr9-70298024", "gene": "SMC5", "chrom": "chr9", "pos": 70298024, "ref": "G", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Arg371Lys", "consequence": "missense_variant", "vaccines": [ "JLF V3", "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "SMC5-chr9-70298024.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 16, "sequence": "EELQQALIVKQNEELDRQKRIGNTRKMIEDL", "scoring_region": { "sequence": "EELQQALIVKQNEELDRQKRIGNTRKMIEDL", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5d801b9e-e275-4573-96f7-d66749aa7bd4_0|orf_743-2155", "protein_id": "5d801b9e-e275-4573-96f7-d66749aa7bd4_0|orf_743-2155", "rna_call_id": "64979", "amino_acid_starts": [ 146 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6ca752c9-41bb-4e37-8e30-fbfb132a897e_0|orf_242-1291", "protein_id": "6ca752c9-41bb-4e37-8e30-fbfb132a897e_0|orf_242-1291", "rna_call_id": "67170", "amino_acid_starts": [ 296 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/050f7df8-8101-467d-9c30-efa8c65e3b59_0|orf_566-1114", "protein_id": "050f7df8-8101-467d-9c30-efa8c65e3b59_0|orf_566-1114", "rna_call_id": "79126", "amino_acid_starts": [ 41 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/07dc69c0-1724-4d6a-86a2-d32de80bb97e_0|orf_278-859", "protein_id": "07dc69c0-1724-4d6a-86a2-d32de80bb97e_0|orf_278-859", "rna_call_id": "78907", "amino_acid_starts": [ 146 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/32433099-17dd-4898-a962-a5ff06dd7eaf_0|orf_750-1382", "protein_id": "32433099-17dd-4898-a962-a5ff06dd7eaf_0|orf_750-1382", "rna_call_id": "77344", "amino_acid_starts": [ 115 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/33bf20fd-0e03-4f89-8698-422c9d7da1cc_0|orf_91-582", "protein_id": "33bf20fd-0e03-4f89-8698-422c9d7da1cc_0|orf_91-582", "rna_call_id": "79794", "amino_acid_starts": [ 111 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/43435cb5-8d84-4dba-aa39-468a3b5b94f4_0|orf_100-912", "protein_id": "43435cb5-8d84-4dba-aa39-468a3b5b94f4_0|orf_100-912", "rna_call_id": "79989", "amino_acid_starts": [ 162 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7faee4e8-16a5-43e3-af2c-8223ce4a674e_0|orf_103-1437", "protein_id": "7faee4e8-16a5-43e3-af2c-8223ce4a674e_0|orf_103-1437", "rna_call_id": "74720", "amino_acid_starts": [ 353 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8595a150-66e4-4987-8cee-08d72830c075_0|orf_114-872", "protein_id": "8595a150-66e4-4987-8cee-08d72830c075_0|orf_114-872", "rna_call_id": "77168", "amino_acid_starts": [ 41 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b6a6f102-4ef6-463a-8658-b50e1cbeab5b_0|orf_129-1475", "protein_id": "b6a6f102-4ef6-463a-8658-b50e1cbeab5b_0|orf_129-1475", "rna_call_id": "73217", "amino_acid_starts": [ 353 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/db110020-9c89-45cb-aa67-f1833daf65a9_0|orf_452-1498", "protein_id": "db110020-9c89-45cb-aa67-f1833daf65a9_0|orf_452-1498", "rna_call_id": "76116", "amino_acid_starts": [ 232 ] } ] }, { "peptide_id": "SMC5-chr9-70298024.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "RQKRIGNTR", "scoring_region": { "sequence": "RQKRIGNTR", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6bde40f5-dfc6-4fc5-b6d9-a6e9440a0b31_0|orf_103-1440", "protein_id": "6bde40f5-dfc6-4fc5-b6d9-a6e9440a0b31_0|orf_103-1440", "rna_call_id": "18937", "amino_acid_starts": [ 369 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5d801b9e-e275-4573-96f7-d66749aa7bd4_0|orf_743-2155", "protein_id": "5d801b9e-e275-4573-96f7-d66749aa7bd4_0|orf_743-2155", "rna_call_id": "64979", "amino_acid_starts": [ 162 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6ca752c9-41bb-4e37-8e30-fbfb132a897e_0|orf_242-1291", "protein_id": "6ca752c9-41bb-4e37-8e30-fbfb132a897e_0|orf_242-1291", "rna_call_id": "67170", "amino_acid_starts": [ 312 ] }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5108716|orf_225-425", "protein_id": "molecule/5108716|orf_225-425", "rna_call_id": "8210", "amino_acid_starts": [ 57 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/050f7df8-8101-467d-9c30-efa8c65e3b59_0|orf_566-1114", "protein_id": "050f7df8-8101-467d-9c30-efa8c65e3b59_0|orf_566-1114", "rna_call_id": "79126", "amino_acid_starts": [ 57 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/07dc69c0-1724-4d6a-86a2-d32de80bb97e_0|orf_278-859", "protein_id": "07dc69c0-1724-4d6a-86a2-d32de80bb97e_0|orf_278-859", "rna_call_id": "78907", "amino_acid_starts": [ 162 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/32433099-17dd-4898-a962-a5ff06dd7eaf_0|orf_750-1382", "protein_id": "32433099-17dd-4898-a962-a5ff06dd7eaf_0|orf_750-1382", "rna_call_id": "77344", "amino_acid_starts": [ 131 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/33bf20fd-0e03-4f89-8698-422c9d7da1cc_0|orf_91-582", "protein_id": "33bf20fd-0e03-4f89-8698-422c9d7da1cc_0|orf_91-582", "rna_call_id": "79794", "amino_acid_starts": [ 127 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/43435cb5-8d84-4dba-aa39-468a3b5b94f4_0|orf_100-912", "protein_id": "43435cb5-8d84-4dba-aa39-468a3b5b94f4_0|orf_100-912", "rna_call_id": "79989", "amino_acid_starts": [ 178 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7faee4e8-16a5-43e3-af2c-8223ce4a674e_0|orf_103-1437", "protein_id": "7faee4e8-16a5-43e3-af2c-8223ce4a674e_0|orf_103-1437", "rna_call_id": "74720", "amino_acid_starts": [ 369 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8595a150-66e4-4987-8cee-08d72830c075_0|orf_114-872", "protein_id": "8595a150-66e4-4987-8cee-08d72830c075_0|orf_114-872", "rna_call_id": "77168", "amino_acid_starts": [ 57 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b6a6f102-4ef6-463a-8658-b50e1cbeab5b_0|orf_129-1475", "protein_id": "b6a6f102-4ef6-463a-8658-b50e1cbeab5b_0|orf_129-1475", "rna_call_id": "73217", "amino_acid_starts": [ 369 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/db110020-9c89-45cb-aa67-f1833daf65a9_0|orf_452-1498", "protein_id": "db110020-9c89-45cb-aa67-f1833daf65a9_0|orf_452-1498", "rna_call_id": "76116", "amino_acid_starts": [ 248 ] } ] }, { "peptide_id": "SMC5-chr9-70298024.peptide-3", "experiments": [], "in_vaccines": [ "JLF V3" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 1, "sequence": "DRQKRIGNTRKMIEDLQNELK", "scoring_region": { "sequence": "DRQKRIGNTRKMIEDLQNELK", "start": 0, "end": 21, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5d801b9e-e275-4573-96f7-d66749aa7bd4_0|orf_743-2155", "protein_id": "5d801b9e-e275-4573-96f7-d66749aa7bd4_0|orf_743-2155", "rna_call_id": "64979", "amino_acid_starts": [ 161 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6ca752c9-41bb-4e37-8e30-fbfb132a897e_0|orf_242-1291", "protein_id": "6ca752c9-41bb-4e37-8e30-fbfb132a897e_0|orf_242-1291", "rna_call_id": "67170", "amino_acid_starts": [ 311 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/050f7df8-8101-467d-9c30-efa8c65e3b59_0|orf_566-1114", "protein_id": "050f7df8-8101-467d-9c30-efa8c65e3b59_0|orf_566-1114", "rna_call_id": "79126", "amino_acid_starts": [ 56 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/07dc69c0-1724-4d6a-86a2-d32de80bb97e_0|orf_278-859", "protein_id": "07dc69c0-1724-4d6a-86a2-d32de80bb97e_0|orf_278-859", "rna_call_id": "78907", "amino_acid_starts": [ 161 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/32433099-17dd-4898-a962-a5ff06dd7eaf_0|orf_750-1382", "protein_id": "32433099-17dd-4898-a962-a5ff06dd7eaf_0|orf_750-1382", "rna_call_id": "77344", "amino_acid_starts": [ 130 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/33bf20fd-0e03-4f89-8698-422c9d7da1cc_0|orf_91-582", "protein_id": "33bf20fd-0e03-4f89-8698-422c9d7da1cc_0|orf_91-582", "rna_call_id": "79794", "amino_acid_starts": [ 126 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/43435cb5-8d84-4dba-aa39-468a3b5b94f4_0|orf_100-912", "protein_id": "43435cb5-8d84-4dba-aa39-468a3b5b94f4_0|orf_100-912", "rna_call_id": "79989", "amino_acid_starts": [ 177 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7faee4e8-16a5-43e3-af2c-8223ce4a674e_0|orf_103-1437", "protein_id": "7faee4e8-16a5-43e3-af2c-8223ce4a674e_0|orf_103-1437", "rna_call_id": "74720", "amino_acid_starts": [ 368 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8595a150-66e4-4987-8cee-08d72830c075_0|orf_114-872", "protein_id": "8595a150-66e4-4987-8cee-08d72830c075_0|orf_114-872", "rna_call_id": "77168", "amino_acid_starts": [ 56 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b6a6f102-4ef6-463a-8658-b50e1cbeab5b_0|orf_129-1475", "protein_id": "b6a6f102-4ef6-463a-8658-b50e1cbeab5b_0|orf_129-1475", "rna_call_id": "73217", "amino_acid_starts": [ 368 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/db110020-9c89-45cb-aa67-f1833daf65a9_0|orf_452-1498", "protein_id": "db110020-9c89-45cb-aa67-f1833daf65a9_0|orf_452-1498", "rna_call_id": "76116", "amino_acid_starts": [ 247 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "corrected", "reconstruction_id": "T1-ONT/corrected/6bde40f5-dfc6-4fc5-b6d9-a6e9440a0b31_0|orf_103-1440", "protein_id": "6bde40f5-dfc6-4fc5-b6d9-a6e9440a0b31_0|orf_103-1440", "rna_call_id": "18937", "variant_amino_acid_start": 371 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/5d801b9e-e275-4573-96f7-d66749aa7bd4_0|orf_743-2155", "protein_id": "5d801b9e-e275-4573-96f7-d66749aa7bd4_0|orf_743-2155", "rna_call_id": "64979", "variant_amino_acid_start": 164 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/6ca752c9-41bb-4e37-8e30-fbfb132a897e_0|orf_242-1291", "protein_id": "6ca752c9-41bb-4e37-8e30-fbfb132a897e_0|orf_242-1291", "rna_call_id": "67170", "variant_amino_acid_start": 314 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/5108716|orf_225-425", "protein_id": "molecule/5108716|orf_225-425", "rna_call_id": "8210", "variant_amino_acid_start": 59 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/050f7df8-8101-467d-9c30-efa8c65e3b59_0|orf_566-1114", "protein_id": "050f7df8-8101-467d-9c30-efa8c65e3b59_0|orf_566-1114", "rna_call_id": "79126", "variant_amino_acid_start": 59 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/07dc69c0-1724-4d6a-86a2-d32de80bb97e_0|orf_278-859", "protein_id": "07dc69c0-1724-4d6a-86a2-d32de80bb97e_0|orf_278-859", "rna_call_id": "78907", "variant_amino_acid_start": 164 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/32433099-17dd-4898-a962-a5ff06dd7eaf_0|orf_750-1382", "protein_id": "32433099-17dd-4898-a962-a5ff06dd7eaf_0|orf_750-1382", "rna_call_id": "77344", "variant_amino_acid_start": 133 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/33bf20fd-0e03-4f89-8698-422c9d7da1cc_0|orf_91-582", "protein_id": "33bf20fd-0e03-4f89-8698-422c9d7da1cc_0|orf_91-582", "rna_call_id": "79794", "variant_amino_acid_start": 129 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/43435cb5-8d84-4dba-aa39-468a3b5b94f4_0|orf_100-912", "protein_id": "43435cb5-8d84-4dba-aa39-468a3b5b94f4_0|orf_100-912", "rna_call_id": "79989", "variant_amino_acid_start": 180 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/7faee4e8-16a5-43e3-af2c-8223ce4a674e_0|orf_103-1437", "protein_id": "7faee4e8-16a5-43e3-af2c-8223ce4a674e_0|orf_103-1437", "rna_call_id": "74720", "variant_amino_acid_start": 371 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/8595a150-66e4-4987-8cee-08d72830c075_0|orf_114-872", "protein_id": "8595a150-66e4-4987-8cee-08d72830c075_0|orf_114-872", "rna_call_id": "77168", "variant_amino_acid_start": 59 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/b6a6f102-4ef6-463a-8658-b50e1cbeab5b_0|orf_129-1475", "protein_id": "b6a6f102-4ef6-463a-8658-b50e1cbeab5b_0|orf_129-1475", "rna_call_id": "73217", "variant_amino_acid_start": 371 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/db110020-9c89-45cb-aa67-f1833daf65a9_0|orf_452-1498", "protein_id": "db110020-9c89-45cb-aa67-f1833daf65a9_0|orf_452-1498", "rna_call_id": "76116", "variant_amino_acid_start": 250 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 11 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 2 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 48 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 1 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 1 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 628, "alt_reads": 0, "total_reads": 629, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 462, "alt_reads": 0, "total_reads": 462, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 335, "alt_reads": 13, "total_reads": 348, "vaf": 0.0374, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 166, "alt_reads": 0, "total_reads": 169, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 333, "alt_reads": 12, "total_reads": 345, "vaf": 0.0348, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 132, "alt_reads": 13, "total_reads": 145, "vaf": 0.0897, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 269, "alt_reads": 16, "total_reads": 285, "vaf": 0.0561, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 131, "alt_reads": 13, "total_reads": 144, "vaf": 0.0903, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 87, "alt_reads": 1, "total_reads": 88, "vaf": 0.0114, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 196, "alt_reads": 22, "total_reads": 218, "vaf": 0.1009, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 21, "alt_reads": 11, "total_reads": 32, "vaf": 0.3438, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 125, "alt_reads": 0, "total_reads": 125, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 339, "alt_reads": 11, "total_reads": 350, "vaf": 0.0314, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 873, "alt_reads": 90, "total_reads": 963, "vaf": 0.0935, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1092, "alt_reads": 4, "total_reads": 1096, "vaf": 0.0036, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 90, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 11, "category": "multiple", "sid_alt_reads": 11, "exacto_raw_rnas": 11 }, "T2-ONT": { "max_alt_reads": 90, "category": "multiple", "sid_alt_reads": 90, "exacto_raw_rnas": 48 }, "T3-ONT": { "max_alt_reads": 4, "category": "multiple", "sid_alt_reads": 4, "exacto_raw_rnas": 1 }, "T1-PacBio": { "max_alt_reads": 2, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 2 }, "T2-ILMN": { "max_alt_reads": 16, "category": "multiple", "sid_alt_reads": 16, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "EXD3-chr9-137373504", "gene": "EXD3", "chrom": "chr9", "pos": 137373504, "ref": "C", "alt": "G", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Glu72Asp", "consequence": "missense_variant", "vaccines": [ "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "EXD3-chr9-137373504.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 12, "sequence": "LAGLLDMLESCRGQRGDGPSLAAWISHQLQ", "scoring_region": { "sequence": "LAGLLDMLESCRGQRGDGPSLAAWISHQLQ", "start": 0, "end": 30, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/356c75c8-3f58-447e-9fe0-e6ce1541bb2d_0|orf_97-756", "protein_id": "356c75c8-3f58-447e-9fe0-e6ce1541bb2d_0|orf_97-756", "rna_call_id": "84312", "amino_acid_starts": [ 56 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d2ec8a54-3616-4b79-a718-7e8b87f0a02a_0|orf_98-631", "protein_id": "d2ec8a54-3616-4b79-a718-7e8b87f0a02a_0|orf_98-631", "rna_call_id": "84262", "amino_acid_starts": [ 55 ] } ] }, { "peptide_id": "EXD3-chr9-137373504.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "GQRGDGPSL", "scoring_region": { "sequence": "GQRGDGPSL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/356c75c8-3f58-447e-9fe0-e6ce1541bb2d_0|orf_97-756", "protein_id": "356c75c8-3f58-447e-9fe0-e6ce1541bb2d_0|orf_97-756", "rna_call_id": "84312", "amino_acid_starts": [ 68 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d2ec8a54-3616-4b79-a718-7e8b87f0a02a_0|orf_98-631", "protein_id": "d2ec8a54-3616-4b79-a718-7e8b87f0a02a_0|orf_98-631", "rna_call_id": "84262", "amino_acid_starts": [ 67 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/356c75c8-3f58-447e-9fe0-e6ce1541bb2d_0|orf_97-756", "protein_id": "356c75c8-3f58-447e-9fe0-e6ce1541bb2d_0|orf_97-756", "rna_call_id": "84312", "variant_amino_acid_start": 72 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/c55a5ea0-5f71-4430-adf1-4ac135443982_0|orf_279-608", "protein_id": "c55a5ea0-5f71-4430-adf1-4ac135443982_0|orf_279-608", "rna_call_id": "84875", "variant_amino_acid_start": 12 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/d2ec8a54-3616-4b79-a718-7e8b87f0a02a_0|orf_98-631", "protein_id": "d2ec8a54-3616-4b79-a718-7e8b87f0a02a_0|orf_98-631", "rna_call_id": "84262", "variant_amino_acid_start": 71 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/652ce177-2e76-4a31-b257-c849df35e0eb_0|orf_144-1007", "protein_id": "652ce177-2e76-4a31-b257-c849df35e0eb_0|orf_144-1007", "rna_call_id": "98318", "variant_amino_acid_start": 73 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 3 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 1 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 39, "alt_reads": 0, "total_reads": 39, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 6, "alt_reads": 0, "total_reads": 6, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 3, "alt_reads": 0, "total_reads": 3, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 6, "alt_reads": 0, "total_reads": 6, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 14, "alt_reads": 6, "total_reads": 20, "vaf": 0.3, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 25, "alt_reads": 8, "total_reads": 33, "vaf": 0.2424, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 14, "alt_reads": 6, "total_reads": 20, "vaf": 0.3, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 80, "alt_reads": 0, "total_reads": 80, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 76, "alt_reads": 5, "total_reads": 81, "vaf": 0.0617, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 15, "alt_reads": 0, "total_reads": 15, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 88, "alt_reads": 0, "total_reads": 88, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 157, "alt_reads": 0, "total_reads": 157, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 71, "alt_reads": 3, "total_reads": 75, "vaf": 0.04, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 142, "alt_reads": 1, "total_reads": 143, "vaf": 0.007, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 8, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 3, "category": "multiple", "sid_alt_reads": 3, "exacto_raw_rnas": 3 }, "T3-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 8, "category": "multiple", "sid_alt_reads": 8, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "MT_ND5-chrM-12994", "gene": "MT-ND5", "chrom": "chrM", "pos": 12994, "ref": "G", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Ala220Thr", "consequence": "missense_variant", "vaccines": [ "CeGaT" ], "published_vaccine_peptides": [ { "peptide_id": "MT_ND5-chrM-12994.peptide-1", "experiments": [], "in_vaccines": [ "CeGaT" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": null, "sequence": "PLLGLLLATAGKSAQLG", "scoring_region": { "sequence": "PLLGLLLATAGKSAQLG", "start": 0, "end": 17, "terminal_tags": [] }, "matches": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/35c4c81a-83fb-4fc9-b67b-c93d0c76d9ab_0|orf_471-701", "protein_id": "35c4c81a-83fb-4fc9-b67b-c93d0c76d9ab_0|orf_471-701", "rna_call_id": "76409", "amino_acid_starts": [ 57 ] }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/621a6c40-255e-46bf-858d-b1e285a2b81c_0|orf_470-712", "protein_id": "621a6c40-255e-46bf-858d-b1e285a2b81c_0|orf_470-712", "rna_call_id": "75608", "amino_acid_starts": [ 56 ] }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ccc8ee4a-1ebb-448d-af49-ad7673e6d32c_0|orf_469-696", "protein_id": "ccc8ee4a-1ebb-448d-af49-ad7673e6d32c_0|orf_469-696", "rna_call_id": "88610", "amino_acid_starts": [ 56 ] }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/3db28a75-776f-4c04-8326-3d5552cdad1a_0|orf_445-666", "protein_id": "3db28a75-776f-4c04-8326-3d5552cdad1a_0|orf_445-666", "rna_call_id": "104358", "amino_acid_starts": [ 54 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/35c4c81a-83fb-4fc9-b67b-c93d0c76d9ab_0|orf_471-701", "protein_id": "35c4c81a-83fb-4fc9-b67b-c93d0c76d9ab_0|orf_471-701", "rna_call_id": "76409", "variant_amino_acid_start": 65 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/621a6c40-255e-46bf-858d-b1e285a2b81c_0|orf_470-712", "protein_id": "621a6c40-255e-46bf-858d-b1e285a2b81c_0|orf_470-712", "rna_call_id": "75608", "variant_amino_acid_start": 64 }, { "sample": "T1-ONT", "arm": "reads", "reconstruction_id": "T1-ONT/reads/f9c7bab3-d2e2-48cf-9392-88547e4d79e6_0|orf_203-589", "protein_id": "f9c7bab3-d2e2-48cf-9392-88547e4d79e6_0|orf_203-589", "rna_call_id": "79035", "variant_amino_acid_start": 79 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/11017826|orf_27-302", "protein_id": "molecule/11017826|orf_27-302", "rna_call_id": "9947", "variant_amino_acid_start": 42 }, { "sample": "T1-PacBio", "arm": "reads", "reconstruction_id": "T1-PacBio/reads/molecule/9675201|orf_356-742", "protein_id": "molecule/9675201|orf_356-742", "rna_call_id": "9393", "variant_amino_acid_start": 79 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/ccc8ee4a-1ebb-448d-af49-ad7673e6d32c_0|orf_469-696", "protein_id": "ccc8ee4a-1ebb-448d-af49-ad7673e6d32c_0|orf_469-696", "rna_call_id": "88610", "variant_amino_acid_start": 64 }, { "sample": "T3-ONT", "arm": "corrected", "reconstruction_id": "T3-ONT/corrected/0514f1c3-ace9-4429-893e-4e5f75daf02a_0|orf_45-431", "protein_id": "0514f1c3-ace9-4429-893e-4e5f75daf02a_0|orf_45-431", "rna_call_id": "31670", "variant_amino_acid_start": 79 }, { "sample": "T3-ONT", "arm": "corrected", "reconstruction_id": "T3-ONT/corrected/4ce91f6f-2885-4627-895c-e1fea082464d_0|orf_28-303", "protein_id": "4ce91f6f-2885-4627-895c-e1fea082464d_0|orf_28-303", "rna_call_id": "31758", "variant_amino_acid_start": 42 }, { "sample": "T3-ONT", "arm": "corrected", "reconstruction_id": "T3-ONT/corrected/625f80b6-2db6-4e17-9293-072fbfa9d3ab_0|orf_1014-1400", "protein_id": "625f80b6-2db6-4e17-9293-072fbfa9d3ab_0|orf_1014-1400", "rna_call_id": "31443", "variant_amino_acid_start": 79 }, { "sample": "T3-ONT", "arm": "corrected", "reconstruction_id": "T3-ONT/corrected/b8f300e8-3627-43aa-a1cc-f2be3f582772_0|orf_218-604", "protein_id": "b8f300e8-3627-43aa-a1cc-f2be3f582772_0|orf_218-604", "rna_call_id": "31666", "variant_amino_acid_start": 79 }, { "sample": "T3-ONT", "arm": "corrected", "reconstruction_id": "T3-ONT/corrected/ff190fe3-e205-4361-a075-f13117d7b60a_0|orf_754-1140", "protein_id": "ff190fe3-e205-4361-a075-f13117d7b60a_0|orf_754-1140", "rna_call_id": "31578", "variant_amino_acid_start": 79 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/0514f1c3-ace9-4429-893e-4e5f75daf02a_0|orf_44-430", "protein_id": "0514f1c3-ace9-4429-893e-4e5f75daf02a_0|orf_44-430", "rna_call_id": "104770", "variant_amino_acid_start": 79 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/3db28a75-776f-4c04-8326-3d5552cdad1a_0|orf_445-666", "protein_id": "3db28a75-776f-4c04-8326-3d5552cdad1a_0|orf_445-666", "rna_call_id": "104358", "variant_amino_acid_start": 62 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/b8f300e8-3627-43aa-a1cc-f2be3f582772_0|orf_218-604", "protein_id": "b8f300e8-3627-43aa-a1cc-f2be3f582772_0|orf_218-604", "rna_call_id": "104765", "variant_amino_acid_start": 79 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/cc5e0574-eba9-4134-8fa1-6f3f4e042382_0|orf_512-754", "protein_id": "cc5e0574-eba9-4134-8fa1-6f3f4e042382_0|orf_512-754", "rna_call_id": "100678", "variant_amino_acid_start": 63 }, { "sample": "T3-ONT", "arm": "reads", "reconstruction_id": "T3-ONT/reads/ff190fe3-e205-4361-a075-f13117d7b60a_0|orf_754-1140", "protein_id": "ff190fe3-e205-4361-a075-f13117d7b60a_0|orf_754-1140", "rna_call_id": "104456", "variant_amino_acid_start": 79 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 8 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 12 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 1 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 134 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 2 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 134 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 5 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 5 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 101 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 1 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 102 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 3 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 5 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 2 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 2 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 117 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 118 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 7 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 8 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 116 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 114 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 10, "alt_reads": 27, "total_reads": 38, "vaf": 0.7105, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 10775, "alt_reads": 5, "total_reads": 10785, "vaf": 0.0005, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 513, "alt_reads": 1629, "total_reads": 2146, "vaf": 0.7591, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 508, "alt_reads": 1600, "total_reads": 2110, "vaf": 0.7583, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 13523, "alt_reads": 4532, "total_reads": 18097, "vaf": 0.2504, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 4572, "alt_reads": 1556, "total_reads": 6139, "vaf": 0.2535, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 228, "alt_reads": 268, "total_reads": 496, "vaf": 0.5403, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 472, "alt_reads": 191, "total_reads": 664, "vaf": 0.2877, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 1148, "alt_reads": 914, "total_reads": 2063, "vaf": 0.443, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 4532, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 268, "category": "multiple", "sid_alt_reads": 268, "exacto_raw_rnas": 134 }, "T2-ONT": { "max_alt_reads": 191, "category": "multiple", "sid_alt_reads": 191, "exacto_raw_rnas": 118 }, "T3-ONT": { "max_alt_reads": 914, "category": "multiple", "sid_alt_reads": 914, "exacto_raw_rnas": 114 }, "T1-PacBio": { "max_alt_reads": 102, "category": "multiple", "sid_alt_reads": null, "exacto_raw_rnas": 102 }, "T2-ILMN": { "max_alt_reads": 4532, "category": "multiple", "sid_alt_reads": 4532, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } }, { "variant_id": "PPP1R3F-chrX-49270761", "gene": "PPP1R3F", "chrom": "chrX", "pos": 49270761, "ref": "G", "alt": "A", "assembly": "GRCh38", "allele_status": "ready", "protein_change": "p.Gly298Arg", "consequence": "missense_variant", "vaccines": [ "mRNA" ], "published_vaccine_peptides": [ { "peptide_id": "PPP1R3F-chrX-49270761.peptide-1", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": false, "minimal_epitope_offset": 18, "sequence": "RNYTVLLRIAPAPTPTDAERLPQQQQLPQLE", "scoring_region": { "sequence": "RNYTVLLRIAPAPTPTDAERLPQQQQLPQLE", "start": 0, "end": 31, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-982", "protein_id": "77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-982", "rna_call_id": "30999", "amino_acid_starts": [ 215 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-850", "protein_id": "fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-850", "rna_call_id": "30910", "amino_acid_starts": [ 145 ] } ] }, { "peptide_id": "PPP1R3F-chrX-49270761.peptide-2", "experiments": [], "in_vaccines": [ "mRNA" ], "is_mrna_minimal_epitope": true, "minimal_epitope_offset": null, "sequence": "ERLPQQQQL", "scoring_region": { "sequence": "ERLPQQQQL", "start": 0, "end": 9, "terminal_tags": [] }, "matches": [ { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-982", "protein_id": "77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-982", "rna_call_id": "30999", "amino_acid_starts": [ 233 ] }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-850", "protein_id": "fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-850", "rna_call_id": "30910", "amino_acid_starts": [ 163 ] } ] } ], "candidate_outcome": "peptide", "residue_confirmed": true, "reconstructed_candidates": [ { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-982", "protein_id": "77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-982", "rna_call_id": "30999", "variant_amino_acid_start": 234 }, { "sample": "T2-ONT", "arm": "corrected", "reconstruction_id": "T2-ONT/corrected/fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-850", "protein_id": "fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-850", "rna_call_id": "30910", "variant_amino_acid_start": 164 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-793", "protein_id": "77c5dd9d-d35d-49dc-a919-5e187b2724fe_0|orf_5-793", "rna_call_id": "91124", "variant_amino_acid_start": 235 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fde52952-31f2-49f8-b31b-c4b0158240b7_0|orf_42-809", "protein_id": "fde52952-31f2-49f8-b31b-c4b0158240b7_0|orf_42-809", "rna_call_id": "91042", "variant_amino_acid_start": 228 }, { "sample": "T2-ONT", "arm": "reads", "reconstruction_id": "T2-ONT/reads/fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-817", "protein_id": "fe3717d3-f056-47f5-aa74-c70b18faefdb_0|orf_245-817", "rna_call_id": "90885", "variant_amino_acid_start": 163 } ], "exacto_runs": [ { "sample": "T1-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-ONT", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "corrected", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T1-PacBio", "arm": "reads", "n_variant_rnas": 0 }, { "sample": "T2-ILMN", "arm": "spades", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "corrected", "n_variant_rnas": 5 }, { "sample": "T2-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T2-ONT", "arm": "reads", "n_variant_rnas": 5 }, { "sample": "T3-ONT", "arm": "assembly", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-ms1", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-permissive", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "assembly-unspliced", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "corrected", "n_variant_rnas": 1 }, { "sample": "T3-ONT", "arm": "isonform", "n_variant_rnas": 0 }, { "sample": "T3-ONT", "arm": "reads", "n_variant_rnas": 1 } ], "source_rna_support": [ { "sample_label": "T0 BostonGene Tumor RNA 2022-12 (BG003082)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "BG003082.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 22, "alt_reads": 0, "total_reads": 22, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T0 Personalis Tumor RNA oncoanalyser", "data_source": "Personalis", "pipeline": null, "assay_type": "RNA", "timepoint": "T0", "tissue": "tumor", "sample_date": "2022-12", "bam_file": "IPISRC044_tumor_T0_personalis_rna.md.bam", "corrections": null, "ref_reads": 261, "alt_reads": 0, "total_reads": 261, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA 2024-06 (BG009368)", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "BG009368.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 41, "alt_reads": 2, "total_reads": 43, "vaf": 0.0465, "benchmark_sample": null }, { "sample_label": "T1 Tempus Tumor RNA 2024-06 (TL-24-KCVBE1UI1P reprocessed)", "data_source": "Tempus", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "TL-24-KCVBE1UI1P.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 0, "alt_reads": 0, "total_reads": 0, "vaf": null, "benchmark_sample": null }, { "sample_label": "T1 BostonGene Tumor RNA oncoanalyser", "data_source": "BostonGene", "pipeline": null, "assay_type": "RNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_tumor_T1_ucla_rna.md.bam", "corrections": "provider-IPISRC044-T1-rna", "ref_reads": 41, "alt_reads": 1, "total_reads": 42, "vaf": 0.0238, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (SARC0277)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "SARC0277.Aligned.sortedByCoord.out.md.bam", "corrections": null, "ref_reads": 9, "alt_reads": 2, "total_reads": 11, "vaf": 0.1818, "benchmark_sample": null }, { "sample_label": "T2 UCLA Tumor RNA 2025-01 (protocol-aligned)", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "25.03.23.rna.ucla.2025.01.resection.tcga.d32.protocolAligned.sorted.bam", "corrections": null, "ref_reads": 21, "alt_reads": 6, "total_reads": 27, "vaf": 0.2222, "benchmark_sample": "T2-ILMN" }, { "sample_label": "T2 UCLA Tumor RNA oncoanalyser", "data_source": "UCLA", "pipeline": null, "assay_type": "RNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_tumor_T2_ucla_rna.md.bam", "corrections": null, "ref_reads": 8, "alt_reads": 2, "total_reads": 10, "vaf": 0.2, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor scRNA 2024-06 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "tumor_scrnaseq_T1.bam", "corrections": null, "ref_reads": 15, "alt_reads": 4, "total_reads": 19, "vaf": 0.2105, "benchmark_sample": null }, { "sample_label": "T2 UCSF Tumor scRNA 2025-01 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "tumor_scrnaseq_T2.bam", "corrections": null, "ref_reads": 18, "alt_reads": 1, "total_reads": 19, "vaf": 0.0526, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (CD45neg)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3_CD45neg.bam", "corrections": null, "ref_reads": 1, "alt_reads": 7, "total_reads": 8, "vaf": 0.875, "benchmark_sample": null }, { "sample_label": "T3 UCSF Tumor scRNA 2025-04 (Kamil CellRanger)", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "tumor_scrnaseq_T3.bam", "corrections": null, "ref_reads": 9, "alt_reads": 0, "total_reads": 9, "vaf": 0.0, "benchmark_sample": null }, { "sample_label": "T1 UCSF Tumor ONT 2024-06", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T1", "tissue": "tumor", "sample_date": "2024-06", "bam_file": "IPISRC044_T1_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 26, "alt_reads": 0, "total_reads": 26, "vaf": 0.0, "benchmark_sample": "T1-ONT" }, { "sample_label": "T2 UCSF Tumor ONT 2025-01", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T2", "tissue": "tumor", "sample_date": "2025-01", "bam_file": "IPISRC044_T2_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 28, "alt_reads": 5, "total_reads": 33, "vaf": 0.1515, "benchmark_sample": "T2-ONT" }, { "sample_label": "T3 UCSF Tumor ONT 2025-04", "data_source": "UCSF", "pipeline": null, "assay_type": "scRNA_ONT", "timepoint": "T3", "tissue": "tumor", "sample_date": "2025-04", "bam_file": "IPISRC044_T3_sclrs_ONT_dedup.bam", "corrections": null, "ref_reads": 40, "alt_reads": 1, "total_reads": 41, "vaf": 0.0244, "benchmark_sample": "T3-ONT" } ], "rna_support": { "max_alt_reads": 6, "category": "multiple", "by_sample": { "T1-ONT": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": 0, "exacto_raw_rnas": 0 }, "T2-ONT": { "max_alt_reads": 5, "category": "multiple", "sid_alt_reads": 5, "exacto_raw_rnas": 5 }, "T3-ONT": { "max_alt_reads": 1, "category": "single", "sid_alt_reads": 1, "exacto_raw_rnas": 1 }, "T1-PacBio": { "max_alt_reads": 0, "category": "zero", "sid_alt_reads": null, "exacto_raw_rnas": 0 }, "T2-ILMN": { "max_alt_reads": 6, "category": "multiple", "sid_alt_reads": 6, "exacto_raw_rnas": null } }, "missing_samples": [], "basis": "Maximum of Sid mutant reads and distinct Exacto raw-read allele-call inputs per benchmark library; never summed" } } ], "primary_window_report": { "policy": "max_raw_or_corrected_per_sample_method_v1", "targets": 36, "recovered": 17, "disagreement": 2, "incomplete": 1, "tied": 5, "outcomes": { "unaligned": 4, "recovered": 17, "incomplete": 1, "no_sequence": 9, "disagreement": 1, "tied": 4 }, "by_support": [ { "label": "10+", "targets": 12, "recovered": 12, "disagreement": 0, "incomplete": 0, "tied": 0, "outcomes": { "recovered": 12 } }, { "label": "5\u20139", "targets": 4, "recovered": 3, "disagreement": 0, "incomplete": 0, "tied": 0, "outcomes": { "recovered": 3, "unaligned": 1 } }, { "label": "2\u20134", "targets": 4, "recovered": 1, "disagreement": 0, "incomplete": 1, "tied": 2, "outcomes": { "unaligned": 1, "recovered": 1, "incomplete": 1, "tied": 1 } }, { "label": "1", "targets": 7, "recovered": 1, "disagreement": 2, "incomplete": 0, "tied": 3, "outcomes": { "recovered": 1, "unaligned": 2, "disagreement": 1, "tied": 3 } }, { "label": "No sequence", "targets": 9, "recovered": 0, "disagreement": 0, "incomplete": 0, "tied": 0, "outcomes": { "no_sequence": 9 } } ], "variants": [ { "variant_id": "ZNF436-chr1-23362762", "support": 4, "status": "unaligned", "recovered": false, "disagreement": false, "tied": false, "leaders": [ { "window": 2, "sample": "T2-ONT", "method": "corrected", "sequence": "KEHILGRGLMTVTSVGKVLEEVVT*", "offset": -22, "peptides": [ { "peptide_id": "ZNF436-chr1-23362762.peptide-1", "status": "unaligned" }, { "peptide_id": "ZNF436-chr1-23362762.peptide-2", "status": "unaligned" }, { "peptide_id": "ZNF436-chr1-23362762.peptide-3", "status": "unaligned" } ] } ] }, { "variant_id": "VPS72-chr1-151185547", "support": 18, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "reads", "sequence": "EPLKSLRPRKVNTPAGSSQKAREERALLPLELQDDGSDSRKSMRQ", "offset": -3, "peptides": [ { "peptide_id": "VPS72-chr1-151185547.peptide-1", "status": "contained" }, { "peptide_id": "VPS72-chr1-151185547.peptide-2", "status": "contained" }, { "peptide_id": "VPS72-chr1-151185547.peptide-3", "status": "contained" } ] } ] }, { "variant_id": "PIP5K1A-chr1-151242178", "support": 2, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T1-ONT", "method": "reads", "sequence": "PSPSKKFRSGSSFSRRAAPVATPALLTSHRSLGNTRHK*", "offset": -6, "peptides": [ { "peptide_id": "PIP5K1A-chr1-151242178.peptide-1", "status": "contained" }, { "peptide_id": "PIP5K1A-chr1-151242178.peptide-2", "status": "contained" }, { "peptide_id": "PIP5K1A-chr1-151242178.peptide-3", "status": "contained" } ] } ] }, { "variant_id": "PRRC2C-chr1-171540477", "support": 2, "status": "incomplete", "recovered": false, "disagreement": false, "tied": true, "leaders": [ { "window": 3, "sample": "T1-ONT", "method": "reads", "sequence": "MEEVNDRPVRRSGPIKKPVL", "offset": 17, "peptides": [ { "peptide_id": "PRRC2C-chr1-171540477.peptide-1", "status": "incomplete" }, { "peptide_id": "PRRC2C-chr1-171540477.peptide-2", "status": "incomplete" } ] }, { "window": 5, "sample": "T2-ONT", "method": "reads", "sequence": "NLKKYINLNQKLVGAHDQALTEWKKLMIDL*", "offset": -22, "peptides": [ { "peptide_id": "PRRC2C-chr1-171540477.peptide-1", "status": "unaligned" }, { "peptide_id": "PRRC2C-chr1-171540477.peptide-2", "status": "unaligned" } ] } ] }, { "variant_id": "CENPL-chr1-173811223", "support": 15, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "corrected", "sequence": "SYSAPESTPSASSRPEDYFIGATHLQKRLESVRKQSSFILTPPRR", "offset": -11, "peptides": [ { "peptide_id": "CENPL-chr1-173811223.peptide-1", "status": "contained" } ] } ] }, { "variant_id": "ASPM-chr1-197102716", "support": 8, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "reads", "sequence": "YYQGKMQREKYLTILKAVKVLQASFRRVRVRRTLRKMQTAATLIQ", "offset": -7, "peptides": [ { "peptide_id": "ASPM-chr1-197102716.peptide-1", "status": "contained" }, { "peptide_id": "ASPM-chr1-197102716.peptide-2", "status": "contained" } ] } ] }, { "variant_id": "DYNC1H1-chr14-101980529", "support": 23, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "reads", "sequence": "RESPEVLLTLDILKHGKRFHATISFDTDTGLKQALETVNDYNPLM", "offset": -5, "peptides": [ { "peptide_id": "DYNC1H1-chr14-101980529.peptide-1", "status": "contained" }, { "peptide_id": "DYNC1H1-chr14-101980529.peptide-2", "status": "contained" }, { "peptide_id": "DYNC1H1-chr14-101980529.peptide-3", "status": "contained" }, { "peptide_id": "DYNC1H1-chr14-101980529.peptide-4", "status": "contained" } ] } ] }, { "variant_id": "SPG11-chr15-44660435", "support": 8, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "reads", "sequence": "LKDGRCDATILYSCSREALQKLIDDQDVSISLLSLRILSFHNNTS", "offset": -7, "peptides": [ { "peptide_id": "SPG11-chr15-44660435.peptide-1", "status": "contained" }, { "peptide_id": "SPG11-chr15-44660435.peptide-2", "status": "contained" } ] } ] }, { "variant_id": "MYO9A-chr15-71994488", "support": 0, "status": "no_sequence", "recovered": false, "disagreement": false, "tied": false, "leaders": [] }, { "variant_id": "NR2F2-chr15-96332299", "support": 0, "status": "no_sequence", "recovered": false, "disagreement": false, "tied": false, "leaders": [] }, { "variant_id": "KIF1C-chr17-5007293", "support": 0, "status": "no_sequence", "recovered": false, "disagreement": false, "tied": false, "leaders": [] }, { "variant_id": "NME1-chr17-51154443", "support": 53, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T1-ONT", "method": "corrected", "sequence": "MVLLSTLGIVFQGEGPPISSCDTRTMANCERTFIAIKPDGVQRG", "offset": -15, "peptides": [ { "peptide_id": "NME1-chr17-51154443.peptide-1", "status": "contained" } ] } ] }, { "variant_id": "MYO15B-chr17-75589953", "support": 1, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "corrected", "sequence": "SEAELETLNDEPRCAGRRAQAPTRVLGLAPPCCYPDSPWRPACSR", "offset": -14, "peptides": [ { "peptide_id": "MYO15B-chr17-75589953.peptide-1", "status": "contained" } ] } ] }, { "variant_id": "EPG5-chr18-45925851", "support": 0, "status": "no_sequence", "recovered": false, "disagreement": false, "tied": false, "leaders": [] }, { "variant_id": "SLC25A12-chr2-171813470", "support": 11, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T1-ONT", "method": "corrected", "sequence": "LQIAESAYRFTLGSVAGAVGATAVYPTDLVKTRMQNQRGSGSVVG", "offset": -6, "peptides": [ { "peptide_id": "SLC25A12-chr2-171813470.peptide-1", "status": "contained" }, { "peptide_id": "SLC25A12-chr2-171813470.peptide-2", "status": "contained" }, { "peptide_id": "SLC25A12-chr2-171813470.peptide-3", "status": "contained" }, { "peptide_id": "SLC25A12-chr2-171813470.peptide-4", "status": "contained" } ] } ] }, { "variant_id": "MAP2-chr2-209694768", "support": 0, "status": "no_sequence", "recovered": false, "disagreement": false, "tied": false, "leaders": [] }, { "variant_id": "BTD-chr3-15645183", "support": 16, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "corrected", "sequence": "CSNGLCCYLLYERPTLSKELYALGVVDGLHTVHGTYYIQVCALVR", "offset": -7, "peptides": [ { "peptide_id": "BTD-chr3-15645183.peptide-1", "status": "contained" }, { "peptide_id": "BTD-chr3-15645183.peptide-2", "status": "contained" }, { "peptide_id": "BTD-chr3-15645183.peptide-3", "status": "contained" } ] } ] }, { "variant_id": "PTH1R-chr3-46898732", "support": 20, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T1-PacBio", "method": "reads", "sequence": "TRNYIHMHLFLSFMLRAVSFFVKDAVLYSGATLDEAERLTEEELR", "offset": -11, "peptides": [ { "peptide_id": "PTH1R-chr3-46898732.peptide-1", "status": "contained" } ] } ] }, { "variant_id": "ABI3BP-chr3-100850671", "support": 1, "status": "unaligned", "recovered": false, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "reads", "sequence": "QQQVIVFWILSHLKLLELLNSQWQHWLQVKHHLFLKNWKSLPVQK", "offset": -22, "peptides": [ { "peptide_id": "ABI3BP-chr3-100850671.peptide-1", "status": "unaligned" }, { "peptide_id": "ABI3BP-chr3-100850671.peptide-2", "status": "unaligned" } ] } ] }, { "variant_id": "ANKRD17-chr4-73097139", "support": 1, "status": "disagreement", "recovered": false, "disagreement": true, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "reads", "sequence": "GPSPLSSPNGKLTVASPKCGHRGKKDGKKL*", "offset": -7, "peptides": [ { "peptide_id": "ANKRD17-chr4-73097139.peptide-1", "status": "disagreement" }, { "peptide_id": "ANKRD17-chr4-73097139.peptide-2", "status": "disagreement" } ] } ] }, { "variant_id": "KDM3B-chr5-138391529", "support": 0, "status": "no_sequence", "recovered": false, "disagreement": false, "tied": false, "leaders": [] }, { "variant_id": "WWC1-chr5-168399513", "support": 1, "status": "tied", "recovered": false, "disagreement": false, "tied": true, "leaders": [ { "window": 2, "sample": "T1-ONT", "method": "reads", "sequence": "SASDPALCVVCCPPGQQAEERDGSPPARAAVQRAWLSDPEEVSTP", "offset": -22, "peptides": [ { "peptide_id": "WWC1-chr5-168399513.peptide-1", "status": "unaligned" }, { "peptide_id": "WWC1-chr5-168399513.peptide-2", "status": "unaligned" }, { "peptide_id": "WWC1-chr5-168399513.peptide-3", "status": "unaligned" } ] }, { "window": 1, "sample": "T2-ONT", "method": "reads", "sequence": "YDPEILKAEIATAKSRVNKLKREMGHLQHELQFKERGFQTLKKID", "offset": -7, "peptides": [ { "peptide_id": "WWC1-chr5-168399513.peptide-1", "status": "contained" }, { "peptide_id": "WWC1-chr5-168399513.peptide-2", "status": "contained" }, { "peptide_id": "WWC1-chr5-168399513.peptide-3", "status": "contained" } ] } ] }, { "variant_id": "H1_2-chr6-26055824", "support": 146, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T1-PacBio", "method": "corrected", "sequence": "KKAKVAKPKKAAKSAAKAVKPKVVKPKKAAPKKK*", "offset": -14, "peptides": [ { "peptide_id": "H1_2-chr6-26055824.peptide-1", "status": "contained" } ] } ] }, { "variant_id": "CUL9-chr6-43186384", "support": 0, "status": "no_sequence", "recovered": false, "disagreement": false, "tied": false, "leaders": [] }, { "variant_id": "ADGRF5-chr6-46856758", "support": 0, "status": "no_sequence", "recovered": false, "disagreement": false, "tied": false, "leaders": [] }, { "variant_id": "CD109-chr6-73818405", "support": 25, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "corrected", "sequence": "DLNHVDLNVCTSFSGPGMSGMALMEVNLLSGFMVPSEAISLSETV", "offset": -11, "peptides": [ { "peptide_id": "CD109-chr6-73818405.peptide-1", "status": "contained" } ] } ] }, { "variant_id": "CDC40-chr6-110228838", "support": 11, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 2, "sample": "T1-ONT", "method": "corrected", "sequence": "VDFKYIAEPSMHSMPAVTLSPNGKSLACQSMDNQILIFGAQNRFR", "offset": -7, "peptides": [ { "peptide_id": "CDC40-chr6-110228838.peptide-1", "status": "contained" }, { "peptide_id": "CDC40-chr6-110228838.peptide-2", "status": "contained" }, { "peptide_id": "CDC40-chr6-110228838.peptide-3", "status": "contained" } ] } ] }, { "variant_id": "TECPR1-chr7-98241127", "support": 1, "status": "tied", "recovered": false, "disagreement": true, "tied": true, "leaders": [ { "window": 1, "sample": "T1-ONT", "method": "corrected", "sequence": "VQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGRCGSEEASTLTIPAAPVGLRWLVR", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "contained" } ] }, { "window": 4, "sample": "T1-ONT", "method": "corrected", "sequence": "VQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGR*", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "contained" } ] }, { "window": 6, "sample": "T1-ONT", "method": "corrected", "sequence": "VQISCGPHDLLWAHSGRDRPWSGEGINRSNPKGGQPGSPTHIPCTGEKGEGHSLPSCPG*", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "disagreement" } ] }, { "window": 1, "sample": "T1-ONT", "method": "reads", "sequence": "VQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGRCGSEEASTLTIPAAPVGLRWLVR", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "contained" } ] }, { "window": 6, "sample": "T1-ONT", "method": "reads", "sequence": "VQISCGPHDLLWAHSGRDRPWSGEGINRSNPKGGQPGSPTHIPCTGEKGEGHSLPSCPG*", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "disagreement" } ] }, { "window": 7, "sample": "T1-PacBio", "method": "corrected", "sequence": "RPPCLAGVNELMQVLCPCLASQVWYREDVSHSNPEGSSWSLLDTPGRWFRSAVGPTTSCGHTLGGTGPGPGRNQQEQSQRWQPGSPTHI", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "disagreement" } ] }, { "window": 1, "sample": "T1-PacBio", "method": "reads", "sequence": "VQISCGPHDLLWAHSGRDRPWSGKESTGAIPKEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGRCGSEEASTLTIPAAPVGLRWLVR", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "contained" } ] }, { "window": 7, "sample": "T1-PacBio", "method": "reads", "sequence": "RPPCLAGVNELMQVLCPCLASQVWYREDVSHSNPEGSSWSLLDTPGRWFRSAVGPTTSCGHTLGGTGPGPGRNQQEQSQRWQPGSPTHI", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "disagreement" } ] }, { "window": 2, "sample": "T2-ONT", "method": "corrected", "sequence": "PTYPVLGRRVGSLAPQLSRLMGATGGFLGARSEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGR*", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "disagreement" } ] }, { "window": 3, "sample": "T2-ONT", "method": "corrected", "sequence": "VQISCGPHDLLWAHSGRDRPWSGKESTGAIPKVGTPAPPPTYPVLGRRVGSLAPQLSRLMGATGGFLGARSEVPGPSWSLLDLKTGSCT", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "contained" } ] }, { "window": 5, "sample": "T2-ONT", "method": "corrected", "sequence": "VQISCGPHDLLWAHSGRDRPWSGKESTGAIPKVGSPAPPPTYPVLGRRVRVTRSPAVQADGGHWGFLGGPVGSSWSIVEPPGSENGVMH", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "contained" } ] }, { "window": 2, "sample": "T2-ONT", "method": "reads", "sequence": "PTYPVLGRRVGSLAPQLSRLMGATGGFLGARSEVPGPSWSLLDLKTGSCTSRWESAWSGLSPRTGR*", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "incomplete" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "contained" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "disagreement" } ] }, { "window": 3, "sample": "T2-ONT", "method": "reads", "sequence": "VQISCGPHDLLWAHSGRDRPWSGKESTGAIPKVGTPAPPPTYPVLGRRVGSLAPQLSRLMGATGGFLGARSEVPGPSWSLLDLKTGSCT", "offset": 0, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "disagreement" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "contained" } ] }, { "window": 8, "sample": "T2-ONT", "method": "reads", "sequence": "VPAGHPRGGGSDQLWAPRPPVGTLWEGQALVREGINRSNPKGGQP", "offset": -22, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "unaligned" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "unaligned" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "unaligned" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "unaligned" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "unaligned" } ] }, { "window": 9, "sample": "T3-ONT", "method": "reads", "sequence": "VPASTPPGRWFRSAVGPTTSCGHAGQALVREGINRSNPKGSSWSI", "offset": -22, "peptides": [ { "peptide_id": "TECPR1-chr7-98241127.peptide-1", "status": "unaligned" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-2", "status": "unaligned" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-3", "status": "unaligned" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-4", "status": "unaligned" }, { "peptide_id": "TECPR1-chr7-98241127.peptide-5", "status": "unaligned" } ] } ] }, { "variant_id": "EXOC4-chr7-133274996", "support": 23, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T1-ONT", "method": "corrected", "sequence": "TVSKSKDPSGLLISVIRTLSTIDDVEDRENEKGRLEEAYEKCDRD", "offset": -11, "peptides": [ { "peptide_id": "EXOC4-chr7-133274996.peptide-1", "status": "contained" }, { "peptide_id": "EXOC4-chr7-133274996.peptide-2", "status": "contained" } ] } ] }, { "variant_id": "BMP1-chr8-22192067", "support": 63, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T1-ONT", "method": "corrected", "sequence": "PEYPNGYSAHMHCVWRISVTPGEKIILNFTTLDLYRSRLCWYDYV", "offset": -6, "peptides": [ { "peptide_id": "BMP1-chr8-22192067.peptide-1", "status": "contained" }, { "peptide_id": "BMP1-chr8-22192067.peptide-2", "status": "contained" }, { "peptide_id": "BMP1-chr8-22192067.peptide-3", "status": "contained" } ] } ] }, { "variant_id": "VPS13B-chr8-99861923", "support": 1, "status": "unaligned", "recovered": false, "disagreement": false, "tied": false, "leaders": [ { "window": 2, "sample": "T1-ONT", "method": "corrected", "sequence": "TGRRSGGGSSPRAWARGFDRACSGWASACLVRGCGASHLSVLQQA", "offset": -22, "peptides": [ { "peptide_id": "VPS13B-chr8-99861923.peptide-1", "status": "unaligned" }, { "peptide_id": "VPS13B-chr8-99861923.peptide-2", "status": "unaligned" } ] }, { "window": 2, "sample": "T1-ONT", "method": "reads", "sequence": "TGRRSGGGSSPRAWARGFDRACSGWASACLVRGCGASHLSVLQQA", "offset": -22, "peptides": [ { "peptide_id": "VPS13B-chr8-99861923.peptide-1", "status": "unaligned" }, { "peptide_id": "VPS13B-chr8-99861923.peptide-2", "status": "unaligned" } ] } ] }, { "variant_id": "GLIS3-chr9-3856149", "support": 0, "status": "no_sequence", "recovered": false, "disagreement": false, "tied": false, "leaders": [] }, { "variant_id": "SMC5-chr9-70298024", "support": 8, "status": "recovered", "recovered": true, "disagreement": false, "tied": false, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "reads", "sequence": "DKHIEELQQALIVKQNEELDRQKRIGNTRKMIEDLQNELKTTENC", "offset": -4, "peptides": [ { "peptide_id": "SMC5-chr9-70298024.peptide-1", "status": "contained" }, { "peptide_id": "SMC5-chr9-70298024.peptide-2", "status": "contained" }, { "peptide_id": "SMC5-chr9-70298024.peptide-3", "status": "contained" } ] } ] }, { "variant_id": "EXD3-chr9-137373504", "support": 1, "status": "tied", "recovered": false, "disagreement": false, "tied": true, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "reads", "sequence": "GLLPWTTLAGLLDMLESCRGQRGDGPSLAAWISHQLQCWLQAQPC", "offset": -7, "peptides": [ { "peptide_id": "EXD3-chr9-137373504.peptide-1", "status": "contained" }, { "peptide_id": "EXD3-chr9-137373504.peptide-2", "status": "contained" } ] }, { "window": 2, "sample": "T2-ONT", "method": "reads", "sequence": "FAALDDPLAGLLDMLESCRGQRGDGPSLAAWISHQLQCWLQAQPC", "offset": -7, "peptides": [ { "peptide_id": "EXD3-chr9-137373504.peptide-1", "status": "contained" }, { "peptide_id": "EXD3-chr9-137373504.peptide-2", "status": "contained" } ] }, { "window": 3, "sample": "T2-ONT", "method": "reads", "sequence": "MLEELQGPAGRRPLPGGLDLPPAAVLATGTAMPE", "offset": -11, "peptides": [ { "peptide_id": "EXD3-chr9-137373504.peptide-1", "status": "unaligned" }, { "peptide_id": "EXD3-chr9-137373504.peptide-2", "status": "unaligned" } ] }, { "window": 4, "sample": "T3-ONT", "method": "reads", "sequence": "CLGRPPGRASGHAGELPGPAGRRPLPGGLDLPPAAVLATGTAMPR", "offset": -22, "peptides": [ { "peptide_id": "EXD3-chr9-137373504.peptide-1", "status": "unaligned" }, { "peptide_id": "EXD3-chr9-137373504.peptide-2", "status": "unaligned" } ] } ] }, { "variant_id": "MT_ND5-chrM-12994", "support": 5, "status": "unaligned", "recovered": false, "disagreement": false, "tied": false, "leaders": [ { "window": 5, "sample": "T3-ONT", "method": "corrected", "sequence": "GVGPSMAEGSQGWRPNWADLPAVARRRPSSGVRLGLAFRRAICCG", "offset": -22, "peptides": [ { "peptide_id": "MT_ND5-chrM-12994.peptide-1", "status": "unaligned" } ] } ] }, { "variant_id": "PPP1R3F-chrX-49270761", "support": 2, "status": "tied", "recovered": false, "disagreement": false, "tied": true, "leaders": [ { "window": 1, "sample": "T2-ONT", "method": "corrected", "sequence": "FWANNHGRNYTVLLRIAPAPTPTDAERLPQQQQLPQLEPQPECQG", "offset": -7, "peptides": [ { "peptide_id": "PPP1R3F-chrX-49270761.peptide-1", "status": "contained" }, { "peptide_id": "PPP1R3F-chrX-49270761.peptide-2", "status": "contained" } ] }, { "window": 3, "sample": "T2-ONT", "method": "reads", "sequence": "TTTAATTQSCSGSHPLPHPLMPKGCPSSSSCRSWSHSPSARVPWR", "offset": -22, "peptides": [ { "peptide_id": "PPP1R3F-chrX-49270761.peptide-1", "status": "unaligned" }, { "peptide_id": "PPP1R3F-chrX-49270761.peptide-2", "status": "unaligned" } ] } ] } ] } }